Wall clock time and date at job start Fri Apr 10 2020 14:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86795 * 120.00196 * 2 1 4 4 H 1.48504 * 109.47178 * 240.00001 * 3 2 1 5 5 H 1.48503 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47160 * 119.99918 * 3 2 1 7 7 C 1.39892 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99963 * 197.77565 * 7 2 1 9 9 C 1.41218 * 120.00136 * 17.77743 * 7 2 1 10 10 C 1.40837 * 120.17931 * 24.71965 * 9 7 2 11 11 C 1.36431 * 119.81413 * 180.25374 * 10 9 7 12 12 C 1.39320 * 120.18144 * 359.45850 * 11 10 9 13 13 O 1.35679 * 119.81597 * 180.25368 * 12 11 10 14 14 S 1.52200 * 113.99698 * 89.99907 * 13 12 11 15 15 O 1.42099 * 104.27067 * 191.07012 * 14 13 12 16 16 O 1.42097 * 104.27785 * 318.92389 * 14 13 12 17 17 C 1.81402 * 104.45028 * 75.00030 * 14 13 12 18 18 C 1.53786 * 113.61152 * 284.13472 * 17 14 13 19 19 C 1.53957 * 87.01727 * 220.04897 * 18 17 14 20 20 C 1.53775 * 113.61340 * 186.52736 * 17 14 13 21 21 C 1.39307 * 120.36351 * 0.27364 * 12 11 10 22 22 C 1.36440 * 120.18758 * 0.02562 * 21 12 11 23 23 H 0.97005 * 119.99704 * 0.02562 * 1 2 3 24 24 H 1.08009 * 120.09204 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.91294 * 179.73087 * 11 10 9 26 26 H 1.08999 * 112.84930 * 55.32681 * 17 14 13 27 27 H 1.08993 * 113.61331 * 334.56696 * 18 17 14 28 28 H 1.08992 * 113.61246 * 105.47207 * 18 17 14 29 29 H 1.09002 * 113.53618 * 270.81658 * 19 18 17 30 30 H 1.08995 * 113.66742 * 139.93060 * 19 18 17 31 31 H 1.09002 * 113.61537 * 254.52907 * 20 17 14 32 32 H 1.09002 * 113.61899 * 25.34561 * 20 17 14 33 33 H 1.08006 * 119.90828 * 180.02562 * 21 12 11 34 34 H 1.08006 * 120.09284 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0496 -1.2338 0.2861 9 6 1.3527 -2.4055 -0.3723 10 6 0.2238 -2.3604 -1.2132 11 6 -0.4070 -3.5181 -1.5645 12 6 0.0695 -4.7432 -1.1030 13 8 -0.5604 -5.8903 -1.4613 14 16 -0.0269 -6.5153 -2.7423 15 8 -0.9764 -7.5229 -3.0623 16 8 0.1881 -5.4097 -3.6086 17 6 1.5541 -7.2613 -2.2578 18 6 2.6869 -6.2378 -2.0722 19 6 3.6139 -7.2605 -2.7541 20 6 2.3586 -7.8231 -3.4418 21 6 1.1889 -4.7969 -0.2755 22 6 1.8275 -3.6480 0.0901 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1439 -1.4118 -1.5759 25 1 -1.2754 -3.4851 -2.2057 26 1 1.4556 -7.9592 -1.4264 27 1 2.5474 -5.3230 -2.6480 28 1 2.9372 -6.0482 -1.0285 29 1 4.0797 -7.9579 -2.0578 30 1 4.3267 -6.8118 -3.4459 31 1 2.3445 -8.9113 -3.5022 32 1 2.1283 -7.3434 -4.3931 33 1 1.5523 -5.7507 0.0777 34 1 2.6955 -3.6914 0.7314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881748517.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:33 Heat of formation + Delta-G solvation = -85.406747 kcal Electronic energy + Delta-G solvation = -20501.468748 eV Core-core repulsion = 17298.891955 eV Total energy + Delta-G solvation = -3202.576793 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48263 -39.50207 -38.65767 -38.10386 -37.06496 -35.46648 -31.74330 -31.31100 -27.32047 -27.20713 -26.76805 -23.57180 -23.13864 -21.45404 -20.56078 -19.47564 -19.29389 -18.41198 -18.28638 -17.20616 -16.80361 -16.17586 -15.83561 -15.76247 -14.70628 -14.65437 -14.18139 -14.01162 -13.81085 -13.77715 -13.54140 -13.46664 -13.30587 -13.10333 -13.05683 -12.97758 -12.79288 -12.59445 -12.32589 -11.80189 -11.57624 -11.49302 -11.27907 -11.04273 -10.95044 -9.61677 -9.38207 -8.78920 -6.45886 -0.69806 0.66840 1.04286 1.40714 1.43158 1.54155 1.57762 2.17117 2.57503 2.69537 3.00140 3.30933 3.51937 3.66265 3.78217 3.87753 4.23073 4.27915 4.38454 4.59368 4.62749 4.77203 4.94945 4.98263 5.00199 5.07436 5.08343 5.11713 5.21220 5.40318 5.51541 5.76564 5.91459 5.96693 6.13807 6.51576 6.75361 6.84553 8.16490 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.028601 B = 0.005279 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.756840 B = 5302.398260 C = 5819.086061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.032 3.968 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.461 4.461 8 H 0.100 0.900 9 C 0.094 3.906 10 C -0.184 4.184 11 C -0.078 4.078 12 C -0.106 4.106 13 O -0.657 6.657 14 S 2.571 3.429 15 O -0.995 6.995 16 O -0.989 6.989 17 C -0.621 4.621 18 C -0.122 4.122 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.065 4.065 22 C -0.218 4.218 23 H 0.295 0.705 24 H 0.110 0.890 25 H 0.094 0.906 26 H 0.178 0.822 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.597 -7.853 -1.152 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.488 4.488 8 H 0.118 0.882 9 C 0.091 3.909 10 C -0.204 4.204 11 C -0.099 4.099 12 C -0.150 4.150 13 O -0.617 6.617 14 S 2.675 3.325 15 O -0.993 6.993 16 O -0.987 6.987 17 C -0.732 4.732 18 C -0.160 4.160 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.085 4.085 22 C -0.238 4.238 23 H 0.106 0.894 24 H 0.128 0.872 25 H 0.112 0.888 26 H 0.195 0.805 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.165 0.835 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.576 -7.665 -1.474 10.877 hybrid contribution -0.238 0.487 0.019 0.542 sum 7.338 -7.178 -1.456 10.368 Atomic orbital electron populations 1.69888 1.09465 1.31643 1.31911 1.26992 0.95458 1.05285 0.90874 0.85134 0.78725 0.74812 0.80505 1.18267 1.19605 1.17537 1.20110 0.99116 0.91730 1.37864 0.88243 1.18150 0.90824 0.94010 0.87945 1.20889 1.00609 0.96200 1.02700 1.20610 0.98604 0.92473 0.98206 1.17661 1.01928 0.80155 1.15244 1.85494 1.69145 1.45024 1.62008 1.06393 0.77353 0.74274 0.74510 1.93472 1.60658 1.62013 1.83129 1.93543 1.87066 1.50731 1.67404 1.32004 1.16925 1.12511 1.11788 1.22989 0.92902 0.95736 1.04413 1.22845 0.95296 0.97522 0.99589 1.22731 0.95714 1.03277 0.93752 1.20732 0.92642 0.99799 0.95326 1.20841 1.04725 0.91246 1.07013 0.89375 0.87187 0.88797 0.80477 0.90267 0.87814 0.87144 0.89648 0.87214 0.89710 0.83542 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.93 10.96 21.82 0.24 -38.69 16 2 C 0.03 1.47 5.14 85.23 0.44 1.90 16 3 Si 0.99 33.87 29.59 68.60 2.03 35.90 16 4 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 6 H -0.25 -8.15 7.11 99.48 0.71 -7.44 16 7 C -0.46 -21.71 9.04 23.40 0.21 -21.50 16 8 H 0.10 4.27 7.91 -2.91 -0.02 4.25 16 9 C 0.09 4.61 5.57 -21.28 -0.12 4.49 16 10 C -0.18 -9.47 8.64 22.48 0.19 -9.28 16 11 C -0.08 -3.90 8.97 22.11 0.20 -3.70 16 12 C -0.11 -4.74 4.65 22.79 0.11 -4.64 16 13 O -0.66 -27.67 10.03 -59.06 -0.59 -28.26 16 14 S 2.57 97.06 5.15 -56.49 -0.29 96.77 16 15 O -0.99 -42.13 18.09 -118.57 -2.15 -44.27 16 16 O -0.99 -43.57 15.62 -118.57 -1.85 -45.42 16 17 C -0.62 -15.89 4.01 31.12 0.12 -15.76 16 18 C -0.12 -3.10 5.18 31.18 0.16 -2.94 16 19 C -0.11 -2.07 8.09 31.18 0.25 -1.82 16 20 C -0.12 -2.39 7.67 31.12 0.24 -2.16 16 21 C -0.07 -2.52 6.56 22.11 0.15 -2.37 16 22 C -0.22 -9.08 9.74 22.48 0.22 -8.86 16 23 H 0.30 12.89 8.30 -92.70 -0.77 12.12 16 24 H 0.11 5.89 6.17 -2.91 -0.02 5.87 16 25 H 0.09 4.62 8.06 -2.91 -0.02 4.59 16 26 H 0.18 3.47 8.14 -2.39 -0.02 3.45 16 27 H 0.08 2.48 7.57 -2.39 -0.02 2.46 16 28 H 0.10 2.40 5.86 -2.39 -0.01 2.38 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.84 8.10 -2.39 -0.02 1.83 16 33 H 0.15 4.34 6.45 -2.91 -0.02 4.32 16 34 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -64.58 293.06 0.68 -63.90 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 1.12 Total: 26.71 kcal Atomic # 6 Polarization: -68.80 SS G_CDS: 2.17 Total: -66.63 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.24 Total: -38.69 kcal Atomic # 8 Polarization: -113.36 SS G_CDS: -4.59 Total: -117.95 kcal Atomic # 14 Polarization: 33.87 SS G_CDS: 2.03 Total: 35.90 kcal Atomic # 16 Polarization: 97.06 SS G_CDS: -0.29 Total: 96.77 kcal Total: -64.58 0.68 -63.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881748517.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.507 kcal (2) G-P(sol) polarization free energy of solvation -64.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds