Wall clock time and date at job start Fri Apr 10 2020 14:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99715 * 2 1 4 4 H 1.48504 * 109.46863 * 269.99873 * 3 2 1 5 5 H 1.48500 * 109.47122 * 29.99615 * 3 2 1 6 6 H 1.48496 * 109.47161 * 150.00344 * 3 2 1 7 7 C 1.37871 * 120.00553 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00621 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99664 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.47020 * 180.02562 * 9 7 2 11 11 O 1.42093 * 108.57871 * 65.51424 * 10 9 7 12 12 O 1.42098 * 108.57884 * 294.48460 * 10 9 7 13 13 C 1.81408 * 101.91800 * 180.02562 * 10 9 7 14 14 C 1.53004 * 109.46660 * 179.97438 * 13 10 9 15 15 H 1.08994 * 110.66701 * 61.76950 * 14 13 10 16 16 C 1.55008 * 110.48319 * 185.53446 * 14 13 10 17 17 C 1.51645 * 101.85574 * 143.75831 * 16 14 13 18 18 C 1.37746 * 132.17003 * 163.83662 * 17 16 14 19 19 C 1.38352 * 119.97878 * 180.90516 * 18 17 16 20 20 C 1.38284 * 119.76714 * 359.97438 * 19 18 17 21 21 C 1.37935 * 120.35151 * 359.81364 * 20 19 18 22 22 C 1.38882 * 107.04656 * 344.53362 * 17 16 14 23 23 O 1.36136 * 111.21223 * 358.67384 * 22 17 16 24 24 H 0.97003 * 119.99729 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46864 * 60.00331 * 9 7 2 26 26 H 1.08996 * 109.47483 * 300.00270 * 9 7 2 27 27 H 1.08998 * 109.46990 * 60.00278 * 13 10 9 28 28 H 1.08998 * 109.47282 * 299.99635 * 13 10 9 29 29 H 1.09000 * 111.45726 * 25.41470 * 16 14 13 30 30 H 1.08995 * 110.49975 * 261.67782 * 16 14 13 31 31 H 1.07996 * 120.00900 * 0.87816 * 18 17 16 32 32 H 1.08001 * 120.11749 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.82582 * 179.84031 * 20 19 18 34 34 H 1.08002 * 119.87808 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 16 2.4300 -3.8778 0.0029 11 8 3.1485 -3.8580 1.2287 12 8 3.1485 -3.8602 -1.2229 13 6 1.3244 -5.3160 0.0034 14 6 2.1574 -6.5995 0.0038 15 1 2.7714 -6.6593 0.9023 16 6 1.2403 -7.8413 -0.1358 17 6 2.0871 -8.7588 -0.9965 18 6 2.0120 -10.1085 -1.2610 19 6 2.9475 -10.7040 -2.0882 20 6 3.9552 -9.9396 -2.6471 21 6 4.0298 -8.5870 -2.3871 22 6 3.0932 -7.9803 -1.5537 23 8 2.9737 -6.6775 -1.1772 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5574 -0.8881 26 1 0.6248 -2.5563 0.8919 27 1 0.6960 -5.2915 -0.8868 28 1 0.6954 -5.2905 0.8932 29 1 0.3046 -7.5918 -0.6361 30 1 1.0513 -8.2880 0.8403 31 1 1.2233 -10.7018 -0.8224 32 1 2.8905 -11.7620 -2.2974 33 1 4.6875 -10.4040 -3.2909 34 1 4.8203 -7.9973 -2.8274 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:40 Heat of formation + Delta-G solvation = -79.496054 kcal Electronic energy + Delta-G solvation = -19542.601777 eV Core-core repulsion = 16340.281290 eV Total energy + Delta-G solvation = -3202.320486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21758 -37.62025 -35.97807 -35.02339 -33.34539 -33.28849 -31.34771 -30.12585 -29.07898 -26.94233 -23.65531 -22.60819 -21.86015 -21.73942 -18.05727 -17.67343 -17.01481 -16.89981 -16.22355 -15.63163 -15.38161 -15.11649 -14.68605 -14.29478 -14.08298 -13.70388 -13.26562 -13.21543 -12.67510 -12.49321 -12.36891 -12.12803 -12.04136 -11.87318 -11.38539 -11.10185 -11.05214 -11.02498 -10.91853 -10.89257 -10.60278 -10.09162 -9.77452 -9.06341 -9.02902 -8.70717 -8.23771 -6.33210 -4.42388 0.90343 1.15250 1.26337 3.08983 3.22958 3.28093 3.34784 3.57538 3.77994 4.09812 4.25375 4.33681 4.54758 4.65605 4.76723 4.87723 4.92322 5.02290 5.08388 5.13618 5.25366 5.42466 5.47093 5.54234 5.65377 5.79052 5.92130 6.18226 6.30700 6.33311 6.49346 6.63603 6.68665 7.11259 7.48719 7.75098 8.59752 9.24744 10.78796 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.044685 B = 0.003806 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.453727 B = 7355.517443 C = 7613.110922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.074 3.926 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.072 0.928 9 C -0.404 4.404 10 S 2.396 3.604 11 O -0.957 6.957 12 O -0.939 6.939 13 C -0.637 4.637 14 C 0.092 3.908 15 H 0.104 0.896 16 C -0.098 4.098 17 C -0.178 4.178 18 C -0.071 4.071 19 C -0.154 4.154 20 C -0.086 4.086 21 C -0.138 4.138 22 C 0.113 3.887 23 O -0.288 6.288 24 H 0.268 0.732 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.147 0.853 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -19.104 -1.622 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.091 0.909 9 C -0.539 4.539 10 S 2.580 3.420 11 O -0.954 6.954 12 O -0.936 6.936 13 C -0.760 4.760 14 C 0.035 3.965 15 H 0.122 0.878 16 C -0.135 4.135 17 C -0.179 4.179 18 C -0.089 4.089 19 C -0.172 4.172 20 C -0.104 4.104 21 C -0.157 4.157 22 C 0.067 3.933 23 O -0.201 6.201 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.156 0.844 28 H 0.165 0.835 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.456 -18.848 -1.703 18.981 hybrid contribution -0.805 0.704 0.080 1.073 sum 0.651 -18.144 -1.623 18.228 Atomic orbital electron populations 1.69947 1.06259 1.27707 1.48011 1.24937 0.95039 0.99619 0.93561 0.86344 0.80029 0.81658 0.78775 1.19891 1.20660 1.19035 1.20370 0.93002 0.88431 1.54947 0.90944 1.27540 1.09832 1.09896 1.06608 1.08941 0.79606 0.78185 0.75256 1.93473 1.69834 1.86049 1.46087 1.93505 1.69369 1.85446 1.45255 1.30721 1.16319 1.16934 1.12035 1.23012 0.90913 0.94252 0.88302 0.87802 1.21887 0.98507 0.92731 1.00407 1.20857 0.97956 0.95143 1.03953 1.20286 0.98740 0.92395 0.97510 1.21007 0.96410 1.00002 0.99826 1.20875 0.98165 0.92564 0.98795 1.20367 0.99125 0.94701 1.01470 1.19653 0.94210 0.83651 0.95792 1.87079 1.68355 1.22106 1.42589 0.92223 0.89669 0.89771 0.84443 0.83513 0.88484 0.88734 0.85865 0.85604 0.85182 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 13.29 55.43 0.74 -24.13 16 2 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.53 -14.70 9.13 -34.44 -0.31 -15.01 16 8 H 0.07 2.01 7.71 -52.48 -0.40 1.60 16 9 C -0.40 -9.53 5.56 36.01 0.20 -9.33 16 10 S 2.40 49.85 4.55 -107.50 -0.49 49.36 16 11 O -0.96 -22.28 18.10 -57.83 -1.05 -23.32 16 12 O -0.94 -22.57 17.25 -62.88 -1.08 -23.66 16 13 C -0.64 -9.35 5.54 37.16 0.21 -9.14 16 14 C 0.09 1.35 3.68 -25.67 -0.09 1.26 16 15 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 16 C -0.10 -1.12 6.64 -26.36 -0.17 -1.30 16 17 C -0.18 -2.26 6.27 -104.10 -0.65 -2.91 16 18 C -0.07 -0.74 10.03 -39.72 -0.40 -1.13 16 19 C -0.15 -1.46 10.07 -39.52 -0.40 -1.85 16 20 C -0.09 -0.87 10.02 -39.68 -0.40 -1.27 16 21 C -0.14 -1.78 10.06 -39.31 -0.40 -2.17 16 22 C 0.11 1.69 7.03 -38.96 -0.27 1.42 16 23 O -0.29 -5.05 9.79 -29.93 -0.29 -5.34 16 24 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.09 1.96 8.14 -51.92 -0.42 1.54 16 26 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 27 H 0.14 1.79 8.11 -51.93 -0.42 1.37 16 28 H 0.15 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.10 1.01 7.91 -51.93 -0.41 0.60 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -35.23 308.30 -9.52 -44.75 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.18 Total: 1.05 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: -2.79 Total: -39.49 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.74 Total: -24.13 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -2.42 Total: -52.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 49.85 SS G_CDS: -0.49 Total: 49.36 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.23 -9.52 -44.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.742 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds