Wall clock time and date at job start Fri Apr 10 2020 14:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99715 * 2 1 4 4 H 1.48504 * 109.46863 * 269.99873 * 3 2 1 5 5 H 1.48500 * 109.47122 * 29.99615 * 3 2 1 6 6 H 1.48496 * 109.47161 * 150.00344 * 3 2 1 7 7 C 1.37871 * 120.00553 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00621 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99664 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.47020 * 180.02562 * 9 7 2 11 11 O 1.42093 * 108.57871 * 65.51424 * 10 9 7 12 12 O 1.42098 * 108.57884 * 294.48460 * 10 9 7 13 13 C 1.81408 * 101.91800 * 180.02562 * 10 9 7 14 14 C 1.53004 * 109.46660 * 179.97438 * 13 10 9 15 15 H 1.08994 * 110.66701 * 61.76950 * 14 13 10 16 16 C 1.55008 * 110.48319 * 185.53446 * 14 13 10 17 17 C 1.51645 * 101.85574 * 143.75831 * 16 14 13 18 18 C 1.37746 * 132.17003 * 163.83662 * 17 16 14 19 19 C 1.38352 * 119.97878 * 180.90516 * 18 17 16 20 20 C 1.38284 * 119.76714 * 359.97438 * 19 18 17 21 21 C 1.37935 * 120.35151 * 359.81364 * 20 19 18 22 22 C 1.38882 * 107.04656 * 344.53362 * 17 16 14 23 23 O 1.36136 * 111.21223 * 358.67384 * 22 17 16 24 24 H 0.97003 * 119.99729 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46864 * 60.00331 * 9 7 2 26 26 H 1.08996 * 109.47483 * 300.00270 * 9 7 2 27 27 H 1.08998 * 109.46990 * 60.00278 * 13 10 9 28 28 H 1.08998 * 109.47282 * 299.99635 * 13 10 9 29 29 H 1.09000 * 111.45726 * 25.41470 * 16 14 13 30 30 H 1.08995 * 110.49975 * 261.67782 * 16 14 13 31 31 H 1.07996 * 120.00900 * 0.87816 * 18 17 16 32 32 H 1.08001 * 120.11749 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.82582 * 179.84031 * 20 19 18 34 34 H 1.08002 * 119.87808 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 16 2.4300 -3.8778 0.0029 11 8 3.1485 -3.8580 1.2287 12 8 3.1485 -3.8602 -1.2229 13 6 1.3244 -5.3160 0.0034 14 6 2.1574 -6.5995 0.0038 15 1 2.7714 -6.6593 0.9023 16 6 1.2403 -7.8413 -0.1358 17 6 2.0871 -8.7588 -0.9965 18 6 2.0120 -10.1085 -1.2610 19 6 2.9475 -10.7040 -2.0882 20 6 3.9552 -9.9396 -2.6471 21 6 4.0298 -8.5870 -2.3871 22 6 3.0932 -7.9803 -1.5537 23 8 2.9737 -6.6775 -1.1772 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5574 -0.8881 26 1 0.6248 -2.5563 0.8919 27 1 0.6960 -5.2915 -0.8868 28 1 0.6954 -5.2905 0.8932 29 1 0.3046 -7.5918 -0.6361 30 1 1.0513 -8.2880 0.8403 31 1 1.2233 -10.7018 -0.8224 32 1 2.8905 -11.7620 -2.2974 33 1 4.6875 -10.4040 -3.2909 34 1 4.8203 -7.9973 -2.8274 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:40 Heat of formation + Delta-G solvation = -104.421663 kcal Electronic energy + Delta-G solvation = -19543.682632 eV Core-core repulsion = 16340.281290 eV Total energy + Delta-G solvation = -3203.401342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.19006 -38.51294 -37.76502 -36.80820 -35.39999 -34.31793 -32.34673 -31.07568 -30.95337 -27.96258 -25.57937 -23.58236 -22.91398 -22.60700 -19.72123 -18.95974 -18.66629 -17.93391 -17.56566 -17.27564 -16.75538 -16.42288 -16.29140 -15.72519 -15.21501 -14.65563 -14.47649 -14.13144 -14.06757 -14.01423 -13.69545 -13.42777 -13.39577 -13.07426 -12.92144 -12.84773 -12.73115 -12.64423 -12.53936 -12.00715 -11.85372 -11.76412 -11.50273 -10.83277 -10.78116 -9.84958 -9.15824 -8.42155 -6.57898 -0.74368 0.32460 0.39815 1.36418 1.37499 1.49719 2.10405 2.16280 2.30196 2.71100 2.85721 2.91724 3.24669 3.32539 3.50190 3.69923 3.84345 3.96188 4.16181 4.25026 4.35632 4.50549 4.56416 4.64518 4.76844 4.77593 4.81282 4.82347 5.10307 5.36048 5.38321 5.45769 5.54156 5.68016 5.74614 6.19333 6.51549 7.12436 8.70424 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.044685 B = 0.003806 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.453727 B = 7355.517443 C = 7613.110922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.565 4.565 8 H 0.057 0.943 9 C -0.423 4.423 10 S 2.407 3.593 11 O -0.991 6.991 12 O -0.982 6.982 13 C -0.600 4.600 14 C 0.073 3.927 15 H 0.105 0.895 16 C -0.087 4.087 17 C -0.185 4.185 18 C -0.072 4.072 19 C -0.145 4.145 20 C -0.086 4.086 21 C -0.161 4.161 22 C 0.064 3.936 23 O -0.328 6.328 24 H 0.274 0.726 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.161 0.839 28 H 0.191 0.809 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -21.797 -1.411 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.178 4.178 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.603 4.603 8 H 0.075 0.925 9 C -0.556 4.556 10 S 2.597 3.403 11 O -0.988 6.988 12 O -0.980 6.980 13 C -0.730 4.730 14 C 0.017 3.983 15 H 0.123 0.877 16 C -0.124 4.124 17 C -0.186 4.186 18 C -0.090 4.090 19 C -0.163 4.163 20 C -0.103 4.103 21 C -0.180 4.180 22 C 0.020 3.980 23 O -0.244 6.244 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.179 0.821 28 H 0.209 0.791 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.185 -21.465 -1.495 21.517 hybrid contribution -0.409 1.326 -0.027 1.388 sum -0.224 -20.139 -1.521 20.198 Atomic orbital electron populations 1.69999 1.07248 1.28833 1.48423 1.25779 0.96021 1.02907 0.93055 0.85509 0.78916 0.78014 0.79245 1.19050 1.18963 1.19093 1.20765 0.92913 0.91052 1.55555 0.92456 1.27619 1.10613 1.10716 1.06653 1.08063 0.79487 0.79046 0.73705 1.93421 1.71344 1.87157 1.46908 1.93448 1.71152 1.86714 1.46643 1.30381 1.14776 1.12268 1.15534 1.23306 0.91731 0.95306 0.87981 0.87690 1.21912 0.97831 0.90606 1.02090 1.21119 0.97452 0.96059 1.03947 1.20722 0.99520 0.91606 0.97144 1.21502 0.95077 1.01591 0.98141 1.21248 0.99014 0.91336 0.98749 1.20642 0.99190 0.96186 1.01967 1.20083 0.96506 0.83333 0.98117 1.87025 1.69516 1.24120 1.43705 0.91678 0.89719 0.89194 0.82116 0.79115 0.86950 0.85609 0.82701 0.82084 0.82417 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.70 13.29 21.45 0.28 -51.41 16 2 C 0.03 1.42 5.46 84.65 0.46 1.88 16 3 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.56 -32.52 9.13 25.60 0.23 -32.28 16 8 H 0.06 3.35 7.71 -2.91 -0.02 3.33 16 9 C -0.42 -20.54 5.56 71.24 0.40 -20.14 16 10 S 2.41 102.65 4.55 -56.49 -0.26 102.40 16 11 O -0.99 -47.54 18.10 -127.37 -2.31 -49.85 16 12 O -0.98 -49.52 17.25 -122.54 -2.11 -51.63 16 13 C -0.60 -16.45 5.54 71.98 0.40 -16.05 16 14 C 0.07 2.06 3.68 31.28 0.12 2.17 16 15 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 16 C -0.09 -1.70 6.64 30.84 0.20 -1.49 16 17 C -0.18 -4.24 6.27 -19.52 -0.12 -4.36 16 18 C -0.07 -1.21 10.03 22.18 0.22 -0.99 16 19 C -0.15 -2.18 10.07 22.31 0.22 -1.95 16 20 C -0.09 -1.55 10.02 22.21 0.22 -1.32 16 21 C -0.16 -4.17 10.06 22.45 0.23 -3.94 16 22 C 0.06 1.92 7.03 22.67 0.16 2.08 16 23 O -0.33 -11.73 9.79 -85.78 -0.84 -12.57 16 24 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 25 H 0.08 4.02 8.14 -2.39 -0.02 4.00 16 26 H 0.09 4.15 8.14 -2.39 -0.02 4.13 16 27 H 0.16 3.78 8.11 -2.39 -0.02 3.76 16 28 H 0.19 3.57 8.14 -2.39 -0.02 3.55 16 29 H 0.11 1.85 7.91 -2.39 -0.02 1.83 16 30 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -80.71 308.30 0.64 -80.07 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.10 Total: 13.58 kcal Atomic # 6 Polarization: -79.15 SS G_CDS: 2.74 Total: -76.41 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.28 Total: -51.41 kcal Atomic # 8 Polarization: -108.79 SS G_CDS: -5.26 Total: -114.05 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 102.65 SS G_CDS: -0.26 Total: 102.40 kcal Total: -80.71 0.64 -80.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.347 kcal (2) G-P(sol) polarization free energy of solvation -80.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds