Wall clock time and date at job start Fri Apr 10 2020 14:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99999 * 2 1 4 4 H 1.48494 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47269 * 300.00065 * 3 2 1 6 6 H 1.48498 * 109.47148 * 59.99867 * 3 2 1 7 7 C 1.37877 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00052 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47325 * 180.02562 * 9 7 2 11 11 O 1.42105 * 108.57879 * 65.51020 * 10 9 7 12 12 O 1.42097 * 108.57629 * 294.48781 * 10 9 7 13 13 C 1.81391 * 101.92304 * 179.97438 * 10 9 7 14 14 C 1.53001 * 109.47348 * 179.97438 * 13 10 9 15 15 H 1.08996 * 110.66784 * 305.70307 * 14 13 10 16 16 C 1.54703 * 110.75172 * 182.48262 * 14 13 10 17 17 C 1.51939 * 101.79411 * 216.51576 * 16 14 13 18 18 C 1.37742 * 132.10475 * 195.84637 * 17 16 14 19 19 C 1.38356 * 119.97691 * 178.82292 * 18 17 16 20 20 C 1.38289 * 119.76213 * 359.97438 * 19 18 17 21 21 C 1.37932 * 120.35416 * 0.17608 * 20 19 18 22 22 C 1.38880 * 107.10274 * 15.12552 * 17 16 14 23 23 O 1.36132 * 111.23457 * 1.26405 * 22 17 16 24 24 H 0.97003 * 120.00224 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47154 * 60.00132 * 9 7 2 26 26 H 1.09006 * 109.47117 * 300.00422 * 9 7 2 27 27 H 1.09003 * 109.47583 * 300.00163 * 13 10 9 28 28 H 1.09003 * 109.47643 * 59.99714 * 13 10 9 29 29 H 1.09007 * 110.93849 * 334.55786 * 16 14 13 30 30 H 1.09002 * 110.93732 * 98.23764 * 16 14 13 31 31 H 1.07996 * 120.01549 * 358.84490 * 18 17 16 32 32 H 1.07998 * 120.11589 * 180.02562 * 19 18 17 33 33 H 1.08003 * 119.82002 * 180.19808 * 20 19 18 34 34 H 1.07995 * 119.87785 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 8 3.1484 -3.8592 1.2253 12 8 3.1483 -3.8592 -1.2263 13 6 1.3243 -5.3161 0.0003 14 6 2.1571 -6.5996 -0.0003 15 1 2.8652 -6.5984 -0.8289 16 6 1.2430 -7.8461 -0.0623 17 6 1.9914 -8.8246 0.8271 18 6 1.8935 -10.1893 0.9858 19 6 2.7336 -10.8447 1.8684 20 6 3.6696 -10.1248 2.5881 21 6 3.7672 -8.7577 2.4331 22 6 2.9218 -8.0897 1.5504 23 8 2.8410 -6.7636 1.2537 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 0.6957 -5.2908 0.8904 28 1 0.6951 -5.2913 -0.8895 29 1 0.2563 -7.6263 0.3454 30 1 1.1663 -8.2226 -1.0824 31 1 1.1616 -10.7477 0.4211 32 1 2.6591 -11.9147 1.9942 33 1 4.3280 -10.6358 3.2750 34 1 4.5012 -8.2031 2.9987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265796.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:43 Heat of formation + Delta-G solvation = -80.138461 kcal Electronic energy + Delta-G solvation = -19503.533559 eV Core-core repulsion = 16301.185216 eV Total energy + Delta-G solvation = -3202.348343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22031 -37.62854 -35.99644 -35.04569 -33.35139 -33.30434 -31.34757 -30.13503 -29.08777 -26.96145 -23.66106 -22.61828 -21.85833 -21.75479 -18.09379 -17.65979 -17.02960 -16.91005 -16.23365 -15.63748 -15.40405 -15.13321 -14.69183 -14.29907 -14.08745 -13.69602 -13.26960 -13.18822 -12.69849 -12.51460 -12.44223 -12.13767 -12.02962 -11.87498 -11.37998 -11.13009 -11.06107 -11.03684 -10.92941 -10.91261 -10.60422 -10.10091 -9.75734 -9.07772 -9.04061 -8.71903 -8.24764 -6.33795 -4.42882 0.89244 1.14240 1.25106 3.07843 3.21068 3.28107 3.36076 3.56592 3.76637 4.08676 4.24833 4.33869 4.54682 4.66044 4.75861 4.84955 4.91205 5.01231 5.06556 5.12774 5.24343 5.40990 5.46022 5.52607 5.64601 5.79696 5.91097 6.17202 6.29521 6.32288 6.48581 6.62902 6.68144 7.10461 7.48563 7.74480 8.59491 9.24304 10.78259 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.045852 B = 0.003749 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.516385 B = 7467.086869 C = 7703.588055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.074 3.926 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.528 4.528 8 H 0.073 0.927 9 C -0.403 4.403 10 S 2.395 3.605 11 O -0.940 6.940 12 O -0.957 6.957 13 C -0.637 4.637 14 C 0.093 3.907 15 H 0.102 0.898 16 C -0.098 4.098 17 C -0.178 4.178 18 C -0.071 4.071 19 C -0.154 4.154 20 C -0.086 4.086 21 C -0.138 4.138 22 C 0.111 3.889 23 O -0.287 6.287 24 H 0.268 0.732 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 -19.209 1.286 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.567 4.567 8 H 0.091 0.909 9 C -0.538 4.538 10 S 2.579 3.421 11 O -0.937 6.937 12 O -0.954 6.954 13 C -0.760 4.760 14 C 0.036 3.964 15 H 0.120 0.880 16 C -0.136 4.136 17 C -0.179 4.179 18 C -0.089 4.089 19 C -0.172 4.172 20 C -0.104 4.104 21 C -0.157 4.157 22 C 0.066 3.934 23 O -0.201 6.201 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.157 0.843 28 H 0.165 0.835 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.265 -18.962 1.397 19.055 hybrid contribution -0.803 0.712 -0.099 1.077 sum 0.462 -18.250 1.299 18.302 Atomic orbital electron populations 1.69953 1.06261 1.27617 1.48065 1.24940 0.95041 0.99638 0.93569 0.86283 0.80465 0.82010 0.78012 1.18921 1.20361 1.20351 1.20411 0.93038 0.88407 1.54849 0.90882 1.27532 1.09804 1.09850 1.06645 1.08974 0.79659 0.78244 0.75235 1.93508 1.69445 1.85493 1.45279 1.93476 1.69869 1.86052 1.46041 1.30731 1.16452 1.16710 1.12085 1.22913 0.93225 0.94206 0.86045 0.87989 1.21893 0.99280 0.91943 1.00474 1.20914 0.99386 0.94968 1.02611 1.20292 0.98759 0.91984 0.97881 1.21011 0.97733 0.99924 0.98567 1.20876 0.98074 0.92732 0.98721 1.20362 1.00105 0.93996 1.01231 1.19663 0.94272 0.83473 0.96010 1.87067 1.74618 1.20637 1.37732 0.92268 0.89730 0.89643 0.84314 0.83513 0.88539 0.88575 0.85846 0.85594 0.85180 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.81 13.29 55.43 0.74 -24.07 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.64 9.13 -34.44 -0.31 -14.96 16 8 H 0.07 2.02 7.71 -52.49 -0.40 1.62 16 9 C -0.40 -9.49 5.56 36.01 0.20 -9.29 16 10 S 2.39 49.56 4.60 -107.50 -0.49 49.07 16 11 O -0.94 -22.55 17.58 -60.01 -1.05 -23.60 16 12 O -0.96 -22.11 18.10 -57.83 -1.05 -23.15 16 13 C -0.64 -9.34 5.49 37.16 0.20 -9.14 16 14 C 0.09 1.37 3.57 -25.83 -0.09 1.28 16 15 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 16 C -0.10 -1.13 6.67 -26.37 -0.18 -1.30 16 17 C -0.18 -2.24 6.28 -103.95 -0.65 -2.89 16 18 C -0.07 -0.73 10.03 -39.72 -0.40 -1.13 16 19 C -0.15 -1.44 10.07 -39.52 -0.40 -1.84 16 20 C -0.09 -0.86 10.02 -39.67 -0.40 -1.25 16 21 C -0.14 -1.75 10.06 -39.31 -0.40 -2.15 16 22 C 0.11 1.66 7.04 -38.96 -0.27 1.38 16 23 O -0.29 -4.98 10.23 -20.90 -0.21 -5.20 16 24 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 26 H 0.09 1.96 8.14 -51.92 -0.42 1.54 16 27 H 0.14 1.83 8.14 -51.92 -0.42 1.40 16 28 H 0.15 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.10 1.00 7.92 -51.93 -0.41 0.58 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -35.15 309.05 -9.41 -44.55 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.18 Total: 1.01 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: -2.79 Total: -39.36 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.74 Total: -24.07 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -2.32 Total: -51.96 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 49.56 SS G_CDS: -0.49 Total: 49.07 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.15 -9.41 -44.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265796.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.585 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds