Wall clock time and date at job start Fri Apr 10 2020 14:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99999 * 2 1 4 4 H 1.48494 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47269 * 300.00065 * 3 2 1 6 6 H 1.48498 * 109.47148 * 59.99867 * 3 2 1 7 7 C 1.37877 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00052 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47325 * 180.02562 * 9 7 2 11 11 O 1.42105 * 108.57879 * 65.51020 * 10 9 7 12 12 O 1.42097 * 108.57629 * 294.48781 * 10 9 7 13 13 C 1.81391 * 101.92304 * 179.97438 * 10 9 7 14 14 C 1.53001 * 109.47348 * 179.97438 * 13 10 9 15 15 H 1.08996 * 110.66784 * 305.70307 * 14 13 10 16 16 C 1.54703 * 110.75172 * 182.48262 * 14 13 10 17 17 C 1.51939 * 101.79411 * 216.51576 * 16 14 13 18 18 C 1.37742 * 132.10475 * 195.84637 * 17 16 14 19 19 C 1.38356 * 119.97691 * 178.82292 * 18 17 16 20 20 C 1.38289 * 119.76213 * 359.97438 * 19 18 17 21 21 C 1.37932 * 120.35416 * 0.17608 * 20 19 18 22 22 C 1.38880 * 107.10274 * 15.12552 * 17 16 14 23 23 O 1.36132 * 111.23457 * 1.26405 * 22 17 16 24 24 H 0.97003 * 120.00224 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47154 * 60.00132 * 9 7 2 26 26 H 1.09006 * 109.47117 * 300.00422 * 9 7 2 27 27 H 1.09003 * 109.47583 * 300.00163 * 13 10 9 28 28 H 1.09003 * 109.47643 * 59.99714 * 13 10 9 29 29 H 1.09007 * 110.93849 * 334.55786 * 16 14 13 30 30 H 1.09002 * 110.93732 * 98.23764 * 16 14 13 31 31 H 1.07996 * 120.01549 * 358.84490 * 18 17 16 32 32 H 1.07998 * 120.11589 * 180.02562 * 19 18 17 33 33 H 1.08003 * 119.82002 * 180.19808 * 20 19 18 34 34 H 1.07995 * 119.87785 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 8 3.1484 -3.8592 1.2253 12 8 3.1483 -3.8592 -1.2263 13 6 1.3243 -5.3161 0.0003 14 6 2.1571 -6.5996 -0.0003 15 1 2.8652 -6.5984 -0.8289 16 6 1.2430 -7.8461 -0.0623 17 6 1.9914 -8.8246 0.8271 18 6 1.8935 -10.1893 0.9858 19 6 2.7336 -10.8447 1.8684 20 6 3.6696 -10.1248 2.5881 21 6 3.7672 -8.7577 2.4331 22 6 2.9218 -8.0897 1.5504 23 8 2.8410 -6.7636 1.2537 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 0.6957 -5.2908 0.8904 28 1 0.6951 -5.2913 -0.8895 29 1 0.2563 -7.6263 0.3454 30 1 1.1663 -8.2226 -1.0824 31 1 1.1616 -10.7477 0.4211 32 1 2.6591 -11.9147 1.9942 33 1 4.3280 -10.6358 3.2750 34 1 4.5012 -8.2031 2.9987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265796.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:43 Heat of formation + Delta-G solvation = -105.269415 kcal Electronic energy + Delta-G solvation = -19504.623319 eV Core-core repulsion = 16301.185216 eV Total energy + Delta-G solvation = -3203.438103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.18796 -38.51403 -37.77855 -36.82637 -35.40121 -34.33344 -32.34151 -31.07291 -30.96113 -27.98071 -25.58159 -23.58451 -22.90900 -22.61668 -19.74650 -18.96853 -18.65718 -17.95077 -17.56383 -17.28095 -16.77271 -16.43243 -16.28938 -15.72901 -15.20316 -14.63941 -14.48511 -14.12180 -14.05686 -14.00995 -13.73830 -13.48854 -13.38887 -13.06840 -12.93888 -12.86193 -12.73819 -12.64254 -12.55673 -12.01227 -11.84138 -11.75065 -11.51422 -10.84639 -10.78330 -9.85258 -9.16146 -8.42278 -6.57891 -0.75174 0.32203 0.39505 1.35989 1.36772 1.51233 2.08824 2.15663 2.30211 2.70479 2.85048 2.91599 3.24409 3.31123 3.50291 3.68250 3.83482 3.95317 4.14095 4.23824 4.35493 4.50128 4.55503 4.64339 4.76924 4.77370 4.81223 4.81989 5.09840 5.36384 5.38045 5.45586 5.54005 5.67798 5.74585 6.19085 6.51759 7.12512 8.70515 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.045852 B = 0.003749 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.516385 B = 7467.086869 C = 7703.588055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.564 4.564 8 H 0.057 0.943 9 C -0.423 4.423 10 S 2.407 3.593 11 O -0.984 6.984 12 O -0.990 6.990 13 C -0.600 4.600 14 C 0.075 3.925 15 H 0.101 0.899 16 C -0.088 4.088 17 C -0.185 4.185 18 C -0.072 4.072 19 C -0.145 4.145 20 C -0.086 4.086 21 C -0.160 4.160 22 C 0.063 3.937 23 O -0.326 6.326 24 H 0.274 0.726 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.161 0.839 28 H 0.192 0.808 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -21.863 0.886 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.602 4.602 8 H 0.076 0.924 9 C -0.556 4.556 10 S 2.596 3.404 11 O -0.981 6.981 12 O -0.987 6.987 13 C -0.729 4.729 14 C 0.018 3.982 15 H 0.118 0.882 16 C -0.125 4.125 17 C -0.186 4.186 18 C -0.090 4.090 19 C -0.163 4.163 20 C -0.103 4.103 21 C -0.179 4.179 22 C 0.019 3.981 23 O -0.242 6.242 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.179 0.821 28 H 0.209 0.791 29 H 0.131 0.869 30 H 0.144 0.856 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.031 -21.540 0.999 21.563 hybrid contribution -0.420 1.320 0.065 1.386 sum -0.389 -20.220 1.064 20.252 Atomic orbital electron populations 1.70002 1.07248 1.28776 1.48481 1.25780 0.96020 1.02921 0.93070 0.85446 0.78957 0.78253 0.78923 1.19275 1.18851 1.19107 1.20794 0.92916 0.91023 1.55463 0.92441 1.27609 1.10588 1.10657 1.06699 1.08085 0.79511 0.79068 0.73692 1.93451 1.71226 1.86755 1.46708 1.93426 1.71322 1.87131 1.46811 1.30380 1.14896 1.12134 1.15523 1.23177 0.94078 0.95344 0.85612 0.88177 1.21921 0.98764 0.89648 1.02179 1.21169 0.98996 0.95987 1.02445 1.20724 0.99229 0.91143 0.97921 1.21505 0.96233 1.01607 0.96966 1.21252 0.98564 0.91548 0.98983 1.20642 1.00306 0.95453 1.01503 1.20089 0.96682 0.83013 0.98335 1.87012 1.75698 1.22629 1.38816 0.91684 0.89114 0.89719 0.82125 0.79084 0.86916 0.85572 0.82737 0.82099 0.82390 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.58 13.29 21.45 0.28 -51.30 16 2 C 0.02 1.40 5.46 84.66 0.46 1.86 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.56 -32.37 9.13 25.60 0.23 -32.14 16 8 H 0.06 3.36 7.71 -2.91 -0.02 3.34 16 9 C -0.42 -20.44 5.56 71.24 0.40 -20.04 16 10 S 2.41 102.07 4.60 -56.49 -0.26 101.81 16 11 O -0.98 -49.47 17.58 -125.29 -2.20 -51.67 16 12 O -0.99 -47.04 18.10 -127.37 -2.31 -49.35 16 13 C -0.60 -16.50 5.49 71.98 0.40 -16.10 16 14 C 0.07 2.10 3.57 31.18 0.11 2.21 16 15 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 16 C -0.09 -1.72 6.67 30.83 0.21 -1.51 16 17 C -0.19 -4.22 6.28 -19.43 -0.12 -4.35 16 18 C -0.07 -1.21 10.03 22.18 0.22 -0.99 16 19 C -0.15 -2.15 10.07 22.31 0.22 -1.93 16 20 C -0.09 -1.52 10.02 22.21 0.22 -1.29 16 21 C -0.16 -4.07 10.06 22.45 0.23 -3.84 16 22 C 0.06 1.87 7.04 22.67 0.16 2.03 16 23 O -0.33 -11.53 10.23 -94.34 -0.97 -12.49 16 24 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 25 H 0.09 4.17 8.14 -2.39 -0.02 4.15 16 26 H 0.08 4.01 8.14 -2.39 -0.02 3.99 16 27 H 0.16 3.85 8.14 -2.39 -0.02 3.83 16 28 H 0.19 3.57 8.14 -2.39 -0.02 3.55 16 29 H 0.11 1.85 7.92 -2.38 -0.02 1.83 16 30 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -80.29 309.05 0.41 -79.88 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.10 Total: 13.43 kcal Atomic # 6 Polarization: -78.82 SS G_CDS: 2.74 Total: -76.09 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.28 Total: -51.30 kcal Atomic # 8 Polarization: -108.04 SS G_CDS: -5.47 Total: -113.51 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 102.07 SS G_CDS: -0.26 Total: 101.81 kcal Total: -80.29 0.41 -79.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265796.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.390 kcal (2) G-P(sol) polarization free energy of solvation -80.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds