Wall clock time and date at job start Fri Apr 10 2020 14:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00318 * 21.64472 * 3 2 1 5 5 N 3.51039 * 140.68790 * 21.64281 * 2 1 3 6 6 C 1.41173 * 119.99505 * 201.64395 * 3 2 1 7 7 C 1.39016 * 120.00565 * 354.74494 * 6 3 2 8 8 H 1.08003 * 119.99611 * 331.44947 * 7 6 3 9 9 C 1.40819 * 120.00527 * 151.44989 * 7 6 3 10 10 N 1.30342 * 120.00421 * 167.18591 * 9 7 6 11 11 Si 1.86804 * 119.99808 * 347.18889 * 9 7 6 12 12 H 1.48502 * 109.47288 * 88.50479 * 11 9 7 13 13 H 1.48509 * 109.47232 * 208.50570 * 11 9 7 14 14 H 1.48505 * 109.47107 * 328.50369 * 11 9 7 15 15 N 1.38256 * 119.99823 * 174.74315 * 6 3 2 16 16 C 1.39892 * 119.99770 * 119.98639 * 15 6 3 17 17 C 1.38554 * 120.65432 * 354.16734 * 16 15 6 18 18 N 1.32207 * 121.07207 * 180.30078 * 17 16 15 19 19 C 1.31564 * 122.48243 * 359.44559 * 18 17 16 20 20 C 1.39763 * 120.45573 * 0.52891 * 19 18 17 21 21 N 1.35552 * 134.15095 * 179.76202 * 20 19 18 22 22 N 1.23647 * 110.56532 * 180.02562 * 21 20 19 23 23 O 1.41831 * 109.89796 * 0.02562 * 22 21 20 24 24 C 1.34687 * 106.45323 * 0.02562 * 23 22 21 25 25 H 0.96997 * 120.00202 * 179.97438 * 10 9 7 26 26 H 0.97005 * 119.99935 * 299.99003 * 15 6 3 27 27 H 1.07999 * 119.46172 * 0.02562 * 17 16 15 28 28 H 1.07994 * 119.77719 * 180.27464 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.1517 -0.4574 5 7 3.8519 -2.0672 -0.8202 6 6 3.2732 1.1374 0.4510 7 6 2.5820 2.2945 0.7916 8 1 1.6390 2.5200 0.3158 9 6 3.1112 3.1725 1.7570 10 7 2.6062 4.3656 1.8995 11 14 4.5373 2.6273 2.8334 12 1 5.8194 2.9461 2.1555 13 1 4.4753 3.3392 4.1353 14 1 4.4508 1.1630 3.0655 15 7 4.6514 1.1000 0.5539 16 6 5.4326 1.9943 -0.1857 17 6 4.8491 2.8410 -1.1143 18 7 5.5801 3.6852 -1.8220 19 6 6.8849 3.7791 -1.6822 20 6 7.5599 2.9646 -0.7687 21 7 8.8592 2.8252 -0.4084 22 7 8.9776 1.9554 0.4624 23 8 7.7064 1.4099 0.7757 24 6 6.8141 2.0492 -0.0047 25 1 2.9705 4.9702 2.5647 26 1 5.0767 0.4535 1.1389 27 1 3.7802 2.8078 -1.2656 28 1 7.4388 4.4874 -2.2802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169082952.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:00 Heat of formation + Delta-G solvation = 164.693875 kcal Electronic energy + Delta-G solvation = -20890.147894 eV Core-core repulsion = 17524.017485 eV Total energy + Delta-G solvation = -3366.130409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.061 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.22121 -39.82431 -37.81440 -36.04935 -35.44876 -34.94484 -34.23328 -32.00802 -31.21908 -28.99189 -27.58290 -25.20465 -24.10697 -22.84225 -21.51651 -19.66543 -18.76986 -18.49333 -17.72906 -17.11217 -16.59998 -16.31497 -16.17587 -15.24895 -14.30064 -13.87493 -13.62042 -13.48786 -13.24504 -13.07969 -12.96897 -12.69491 -12.47734 -12.23223 -12.01152 -11.86980 -11.79590 -11.74738 -11.38379 -11.17893 -10.85995 -10.54696 -10.03541 -10.00388 -9.75071 -8.65891 -8.00372 -7.47860 -5.69327 -0.03553 0.97900 1.63537 1.87328 1.97412 2.50865 2.62384 2.66189 3.10631 3.21803 3.54917 3.63056 3.77425 3.84611 3.96002 4.01621 4.10997 4.31738 4.46494 4.80317 4.90796 5.01396 5.26663 5.51447 5.65619 5.88639 6.16311 6.22679 6.63450 6.92942 7.23951 7.32488 7.44826 7.55847 7.79990 7.86361 8.69505 8.91907 8.94613 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.007865 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.381179 B = 3559.447056 C = 4133.026679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.321 3.679 3 C -0.282 4.282 4 C 0.303 3.697 5 N -0.521 5.521 6 C 0.328 3.672 7 C -0.358 4.358 8 H 0.130 0.870 9 C 0.075 3.925 10 N -0.716 5.716 11 Si 0.918 3.082 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.247 1.247 15 N -0.679 5.679 16 C 0.183 3.817 17 C 0.105 3.895 18 N -0.441 5.441 19 C 0.156 3.844 20 C -0.082 4.082 21 N -0.143 5.143 22 N -0.002 5.002 23 O -0.128 6.128 24 C 0.043 3.957 25 H 0.308 0.692 26 H 0.410 0.590 27 H 0.196 0.804 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.776 5.603 0.215 10.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C 0.011 3.989 3 C -0.300 4.300 4 C -0.005 4.005 5 N -0.203 5.203 6 C 0.226 3.774 7 C -0.385 4.385 8 H 0.147 0.853 9 C -0.158 4.158 10 N -0.333 5.333 11 Si 0.743 3.257 12 H -0.186 1.186 13 H -0.204 1.204 14 H -0.170 1.170 15 N -0.307 5.307 16 C 0.077 3.923 17 C -0.053 4.053 18 N -0.150 5.150 19 C -0.015 4.015 20 C -0.198 4.198 21 N -0.045 5.045 22 N 0.071 4.929 23 O -0.118 6.118 24 C -0.026 4.026 25 H 0.120 0.880 26 H 0.249 0.751 27 H 0.213 0.787 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.459 4.800 -0.450 9.737 hybrid contribution 0.595 -0.585 1.589 1.795 sum 9.055 4.214 1.139 10.052 Atomic orbital electron populations 1.81094 1.12100 1.09828 1.16605 1.24544 0.91153 0.92173 0.90982 1.12789 0.83167 0.93768 1.40231 1.25220 0.92620 0.91848 0.90784 1.81134 1.09669 1.11890 1.17592 1.16851 0.78871 0.91545 0.90126 1.20154 1.06012 0.99225 1.13109 0.85277 1.26639 0.98115 0.93429 0.97596 1.69372 1.33849 1.04647 1.25438 0.86082 0.79383 0.81468 0.78789 1.18628 1.20392 1.17027 1.42241 1.05170 1.36502 1.46750 1.17745 0.83974 0.95037 0.95557 1.23101 1.01967 0.90299 0.89920 1.67801 1.05399 1.18983 1.22865 1.22341 0.89436 0.95936 0.93766 1.21925 0.86601 1.04909 1.06321 1.72459 1.18083 1.08891 1.05057 1.82791 0.97849 1.03879 1.08380 1.89472 1.15244 1.53910 1.53152 1.20343 0.92176 0.95561 0.94514 0.88029 0.75130 0.78716 0.80601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.49 18.54 41.83 0.78 -10.72 15 2 C 0.32 6.71 14.06 -22.47 -0.32 6.40 15 3 C -0.28 -5.45 5.88 -104.93 -0.62 -6.06 15 4 C 0.30 6.17 14.82 -22.46 -0.33 5.84 15 5 N -0.52 -11.29 18.54 41.86 0.78 -10.52 15 6 C 0.33 5.84 4.45 -83.56 -0.37 5.47 15 7 C -0.36 -6.64 7.10 -38.32 -0.27 -6.91 15 8 H 0.13 2.59 7.50 -52.48 -0.39 2.20 15 9 C 0.08 1.37 5.32 -17.21 -0.09 1.28 15 10 N -0.72 -13.52 13.90 55.59 0.77 -12.75 15 11 Si 0.92 15.34 24.41 -169.99 -4.15 11.19 15 12 H -0.26 -4.41 5.46 56.52 0.31 -4.10 15 13 H -0.28 -4.67 7.11 56.52 0.40 -4.26 15 14 H -0.25 -4.06 6.69 56.52 0.38 -3.68 15 15 N -0.68 -11.28 2.25 -8.11 -0.02 -11.30 15 16 C 0.18 2.94 4.55 -83.62 -0.38 2.56 15 17 C 0.10 1.61 10.02 -17.27 -0.17 1.44 15 18 N -0.44 -6.36 10.31 -12.77 -0.13 -6.50 15 19 C 0.16 1.98 11.27 -17.10 -0.19 1.79 15 20 C -0.08 -1.20 7.32 -84.75 -0.62 -1.82 15 21 N -0.14 -2.08 12.21 32.15 0.39 -1.68 15 22 N 0.00 -0.02 13.89 60.35 0.84 0.81 15 23 O -0.13 -2.10 12.25 7.83 0.10 -2.00 15 24 C 0.04 0.68 6.35 -38.23 -0.24 0.44 15 25 H 0.31 5.23 8.29 -40.82 -0.34 4.89 15 26 H 0.41 6.56 7.85 -40.82 -0.32 6.24 15 27 H 0.20 3.01 6.17 -52.49 -0.32 2.69 15 28 H 0.18 1.57 8.06 -52.49 -0.42 1.15 15 LS Contribution 274.58 15.07 4.14 4.14 Total: -1.00 -22.94 274.58 -0.83 -23.77 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -0.71 Total: 5.12 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -3.61 Total: 10.42 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 3.41 Total: -52.65 kcal Atomic # 8 Polarization: -2.10 SS G_CDS: 0.10 Total: -2.00 kcal Atomic # 14 Polarization: 15.34 SS G_CDS: -4.15 Total: 11.19 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -22.94 -0.83 -23.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082952.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.466 kcal (2) G-P(sol) polarization free energy of solvation -22.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds