Wall clock time and date at job start Fri Apr 10 2020 14:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00318 * 21.64472 * 3 2 1 5 5 N 3.51039 * 140.68790 * 21.64281 * 2 1 3 6 6 C 1.41173 * 119.99505 * 201.64395 * 3 2 1 7 7 C 1.39016 * 120.00565 * 354.74494 * 6 3 2 8 8 H 1.08003 * 119.99611 * 331.44947 * 7 6 3 9 9 C 1.40819 * 120.00527 * 151.44989 * 7 6 3 10 10 N 1.30342 * 120.00421 * 167.18591 * 9 7 6 11 11 Si 1.86804 * 119.99808 * 347.18889 * 9 7 6 12 12 H 1.48502 * 109.47288 * 88.50479 * 11 9 7 13 13 H 1.48509 * 109.47232 * 208.50570 * 11 9 7 14 14 H 1.48505 * 109.47107 * 328.50369 * 11 9 7 15 15 N 1.38256 * 119.99823 * 174.74315 * 6 3 2 16 16 C 1.39892 * 119.99770 * 119.98639 * 15 6 3 17 17 C 1.38554 * 120.65432 * 354.16734 * 16 15 6 18 18 N 1.32207 * 121.07207 * 180.30078 * 17 16 15 19 19 C 1.31564 * 122.48243 * 359.44559 * 18 17 16 20 20 C 1.39763 * 120.45573 * 0.52891 * 19 18 17 21 21 N 1.35552 * 134.15095 * 179.76202 * 20 19 18 22 22 N 1.23647 * 110.56532 * 180.02562 * 21 20 19 23 23 O 1.41831 * 109.89796 * 0.02562 * 22 21 20 24 24 C 1.34687 * 106.45323 * 0.02562 * 23 22 21 25 25 H 0.96997 * 120.00202 * 179.97438 * 10 9 7 26 26 H 0.97005 * 119.99935 * 299.99003 * 15 6 3 27 27 H 1.07999 * 119.46172 * 0.02562 * 17 16 15 28 28 H 1.07994 * 119.77719 * 180.27464 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.1517 -0.4574 5 7 3.8519 -2.0672 -0.8202 6 6 3.2732 1.1374 0.4510 7 6 2.5820 2.2945 0.7916 8 1 1.6390 2.5200 0.3158 9 6 3.1112 3.1725 1.7570 10 7 2.6062 4.3656 1.8995 11 14 4.5373 2.6273 2.8334 12 1 5.8194 2.9461 2.1555 13 1 4.4753 3.3392 4.1353 14 1 4.4508 1.1630 3.0655 15 7 4.6514 1.1000 0.5539 16 6 5.4326 1.9943 -0.1857 17 6 4.8491 2.8410 -1.1143 18 7 5.5801 3.6852 -1.8220 19 6 6.8849 3.7791 -1.6822 20 6 7.5599 2.9646 -0.7687 21 7 8.8592 2.8252 -0.4084 22 7 8.9776 1.9554 0.4624 23 8 7.7064 1.4099 0.7757 24 6 6.8141 2.0492 -0.0047 25 1 2.9705 4.9702 2.5647 26 1 5.0767 0.4535 1.1389 27 1 3.7802 2.8078 -1.2656 28 1 7.4388 4.4874 -2.2802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082952.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:00 Heat of formation + Delta-G solvation = 150.317276 kcal Electronic energy + Delta-G solvation = -20890.771310 eV Core-core repulsion = 17524.017485 eV Total energy + Delta-G solvation = -3366.753825 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.061 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.40185 -41.06598 -39.14644 -37.39863 -36.91573 -36.61007 -35.66874 -33.35400 -32.45165 -30.28807 -29.11766 -26.40038 -25.28887 -24.09917 -22.90624 -21.10353 -20.03619 -19.76324 -19.21598 -18.35360 -17.93639 -17.63122 -17.42468 -16.52586 -15.51479 -15.14523 -14.97886 -14.69927 -14.62361 -14.56954 -14.43465 -14.23007 -13.72687 -13.60601 -13.50376 -13.45242 -13.22338 -13.14148 -12.89135 -12.78746 -12.36132 -11.89354 -11.37071 -11.18743 -10.93702 -10.10600 -9.45321 -8.79786 -7.25457 -1.20943 -0.21233 0.25505 0.64052 0.76209 1.15393 1.27274 1.34223 1.77729 1.85704 2.00635 2.18757 2.37406 2.46491 2.50186 2.61828 2.86190 3.11534 3.28663 3.36882 3.61367 3.64979 3.86903 4.31913 4.38774 4.61581 4.67197 5.03061 5.26840 5.45345 5.71866 5.95619 6.09867 6.29175 6.41909 6.65475 7.08096 7.27495 7.53239 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.007865 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.381179 B = 3559.447056 C = 4133.026679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C 0.328 3.672 3 C -0.289 4.289 4 C 0.315 3.685 5 N -0.546 5.546 6 C 0.347 3.653 7 C -0.354 4.354 8 H 0.113 0.887 9 C 0.064 3.936 10 N -0.732 5.732 11 Si 0.947 3.053 12 H -0.261 1.261 13 H -0.276 1.276 14 H -0.244 1.244 15 N -0.682 5.682 16 C 0.166 3.834 17 C 0.109 3.891 18 N -0.451 5.451 19 C 0.181 3.819 20 C -0.090 4.090 21 N -0.131 5.131 22 N -0.006 5.006 23 O -0.142 6.142 24 C 0.036 3.964 25 H 0.318 0.682 26 H 0.413 0.587 27 H 0.192 0.808 28 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.170 6.779 0.036 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.227 5.227 2 C 0.020 3.980 3 C -0.307 4.307 4 C 0.008 3.992 5 N -0.229 5.229 6 C 0.244 3.756 7 C -0.381 4.381 8 H 0.130 0.870 9 C -0.168 4.168 10 N -0.350 5.350 11 Si 0.770 3.230 12 H -0.186 1.186 13 H -0.203 1.203 14 H -0.168 1.168 15 N -0.311 5.311 16 C 0.061 3.939 17 C -0.048 4.048 18 N -0.160 5.160 19 C 0.011 3.989 20 C -0.205 4.205 21 N -0.033 5.033 22 N 0.065 4.935 23 O -0.130 6.130 24 C -0.033 4.033 25 H 0.131 0.869 26 H 0.252 0.748 27 H 0.208 0.792 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 9.856 5.982 -0.634 11.546 hybrid contribution 0.233 -0.786 1.594 1.792 sum 10.089 5.196 0.960 11.389 Atomic orbital electron populations 1.81088 1.12899 1.10738 1.17992 1.24755 0.91410 0.91458 0.90352 1.12772 0.82458 0.94159 1.41348 1.25255 0.92127 0.91586 0.90233 1.81136 1.10428 1.12546 1.18763 1.16588 0.79486 0.90589 0.88934 1.20084 1.05321 0.99612 1.13063 0.86973 1.26936 0.98851 0.93226 0.97754 1.69357 1.34399 1.05191 1.26052 0.85636 0.77952 0.81423 0.77945 1.18605 1.20267 1.16757 1.42113 1.04500 1.37143 1.47372 1.17743 0.84070 0.95698 0.96387 1.23118 1.02063 0.90071 0.89576 1.67905 1.06144 1.18996 1.22951 1.23071 0.88812 0.94814 0.92217 1.22157 0.86436 1.05150 1.06725 1.72416 1.17925 1.08378 1.04560 1.82815 0.97525 1.04302 1.08892 1.89467 1.15633 1.54355 1.53549 1.20491 0.92213 0.95841 0.94705 0.86926 0.74795 0.79164 0.76312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -24.40 18.54 19.00 0.35 -24.05 15 2 C 0.33 13.73 14.06 88.33 1.24 14.97 15 3 C -0.29 -11.06 5.88 -20.07 -0.12 -11.18 15 4 C 0.31 12.68 14.82 88.32 1.31 13.99 15 5 N -0.55 -23.44 18.54 19.01 0.35 -23.08 15 6 C 0.35 12.11 4.45 39.04 0.17 12.29 15 7 C -0.35 -12.89 7.10 23.09 0.16 -12.73 15 8 H 0.11 4.51 7.50 -2.91 -0.02 4.48 15 9 C 0.06 2.28 5.32 85.55 0.46 2.73 15 10 N -0.73 -26.75 13.90 21.98 0.31 -26.44 15 11 Si 0.95 29.91 24.41 68.60 1.67 31.59 15 12 H -0.26 -8.27 5.46 99.48 0.54 -7.72 15 13 H -0.28 -8.66 7.11 99.48 0.71 -7.96 15 14 H -0.24 -7.59 6.69 99.48 0.67 -6.93 15 15 N -0.68 -21.95 2.25 -179.56 -0.40 -22.35 15 16 C 0.17 5.07 4.55 38.22 0.17 5.25 15 17 C 0.11 3.18 10.02 84.71 0.85 4.03 15 18 N -0.45 -11.80 10.31 -194.30 -2.00 -13.81 15 19 C 0.18 3.96 11.27 85.10 0.96 4.92 15 20 C -0.09 -2.36 7.32 39.52 0.29 -2.07 15 21 N -0.13 -3.47 12.21 -52.20 -0.64 -4.11 15 22 N -0.01 -0.19 13.89 37.02 0.51 0.33 15 23 O -0.14 -4.44 12.25 30.16 0.37 -4.07 15 24 C 0.04 1.08 6.35 23.15 0.15 1.23 15 25 H 0.32 10.33 8.29 -92.71 -0.77 9.56 15 26 H 0.41 12.80 7.85 -92.70 -0.73 12.07 15 27 H 0.19 5.72 6.17 -2.91 -0.02 5.70 15 28 H 0.22 2.81 8.06 -2.91 -0.02 2.78 15 Total: -1.00 -47.11 274.58 6.52 -40.58 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.36 Total: 11.99 kcal Atomic # 6 Polarization: 27.78 SS G_CDS: 5.64 Total: 33.42 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -1.52 Total: -113.51 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: 0.37 Total: -4.07 kcal Atomic # 14 Polarization: 29.91 SS G_CDS: 1.67 Total: 31.59 kcal Total: -47.11 6.52 -40.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082952.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.902 kcal (2) G-P(sol) polarization free energy of solvation -47.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds