Wall clock time and date at job start Fri Apr 10 2020 14:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48500 * 109.47340 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47015 * 299.99588 * 3 2 1 6 6 H 1.48491 * 109.47205 * 59.99598 * 3 2 1 7 7 C 1.37881 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50690 * 119.99892 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47354 * 300.00034 * 9 7 2 11 11 C 1.53001 * 109.47416 * 59.99331 * 9 7 2 12 12 Cl 1.80302 * 109.47285 * 184.99890 * 11 9 7 13 13 O 1.42903 * 109.47656 * 179.97438 * 9 7 2 14 14 C 1.36030 * 117.00387 * 146.54607 * 13 9 7 15 15 C 1.40554 * 119.95871 * 356.59986 * 14 13 9 16 16 C 1.36217 * 119.57027 * 179.97438 * 15 14 13 17 17 C 1.40585 * 119.36090 * 0.24705 * 16 15 14 18 18 N 1.33066 * 132.66337 * 180.45247 * 17 16 15 19 19 C 1.32916 * 109.61740 * 179.53462 * 18 17 16 20 20 N 1.39349 * 125.27799 * 179.76832 * 19 18 17 21 21 N 1.31833 * 109.44559 * 359.73338 * 19 18 17 22 22 N 1.36492 * 119.80472 * 359.47242 * 17 16 15 23 23 C 1.35677 * 119.95924 * 176.57462 * 14 13 9 24 24 H 0.96999 * 120.00517 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47422 * 305.00282 * 11 9 7 26 26 H 1.09008 * 109.47045 * 65.00095 * 11 9 7 27 27 H 1.07996 * 120.21446 * 359.95415 * 15 14 13 28 28 H 1.08001 * 120.31371 * 179.97438 * 16 15 14 29 29 H 0.97005 * 120.00245 * 179.97438 * 20 19 18 30 30 H 0.96996 * 120.00236 * 359.96023 * 20 19 18 31 31 H 1.08003 * 119.73956 * 0.02599 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3719 -2.5805 -1.2489 12 17 -0.6385 -4.0720 -1.1767 13 8 2.1797 -3.5853 0.0005 14 6 1.8125 -4.7118 0.6687 15 6 0.5994 -4.7432 1.3779 16 6 0.2392 -5.8757 2.0438 17 6 1.0913 -6.9934 2.0140 18 7 1.0037 -8.2087 2.5490 19 6 2.0776 -8.9195 2.2200 20 7 2.3229 -10.2345 2.6105 21 7 2.8743 -8.1879 1.4664 22 7 2.2607 -6.9365 1.3123 23 6 2.6173 -5.8039 0.6492 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2756 -1.7049 -1.2953 26 1 1.0039 -2.6123 -2.1365 27 1 -0.0427 -3.8751 1.3952 28 1 -0.6901 -5.9129 2.5929 29 1 3.1348 -10.6818 2.3249 30 1 1.6818 -10.7025 3.1681 31 1 3.5482 -5.7737 0.1024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234015741.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:29 Heat of formation + Delta-G solvation = 79.922679 kcal Electronic energy + Delta-G solvation = -19451.287581 eV Core-core repulsion = 16182.588710 eV Total energy + Delta-G solvation = -3268.698870 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.062 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20718 -39.22536 -36.65320 -35.03627 -33.90689 -33.44704 -32.94639 -30.07847 -29.54406 -28.09121 -25.48207 -23.86601 -22.89914 -21.34313 -21.08952 -18.00357 -17.76129 -17.04564 -16.64946 -15.94573 -15.69939 -15.47204 -15.12648 -14.47881 -14.23601 -14.00238 -13.37305 -12.79507 -12.60035 -12.42293 -12.11313 -11.77659 -11.35426 -11.15121 -11.07560 -10.87925 -10.78830 -10.38507 -10.11063 -9.74930 -9.68862 -9.50382 -8.98699 -8.81192 -8.28869 -7.35110 -6.57227 -4.65502 1.03044 1.46365 2.22060 3.03420 3.14487 3.18484 3.19282 3.24113 3.46759 3.77795 3.92426 4.21411 4.43125 4.79181 4.88998 5.07985 5.31732 5.54607 5.88267 6.04373 6.09899 6.20774 6.26152 6.43243 6.58545 6.66881 6.95834 7.01557 7.38345 7.41064 7.46171 7.58222 8.01895 8.49261 8.51052 9.03249 10.49904 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.030499 B = 0.004540 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.830001 B = 6165.351886 C = 6606.072110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.524 4.524 8 H 0.080 0.920 9 C 0.207 3.793 10 H 0.053 0.947 11 C -0.039 4.039 12 Cl -0.241 7.241 13 O -0.298 6.298 14 C 0.125 3.875 15 C -0.097 4.097 16 C -0.094 4.094 17 C 0.279 3.721 18 N -0.588 5.588 19 C 0.491 3.509 20 N -0.824 5.824 21 N -0.391 5.391 22 N -0.247 5.247 23 C 0.034 3.966 24 H 0.273 0.727 25 H 0.137 0.863 26 H 0.078 0.922 27 H 0.165 0.835 28 H 0.155 0.845 29 H 0.412 0.588 30 H 0.413 0.587 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 -8.977 2.089 9.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.098 0.902 9 C 0.152 3.848 10 H 0.071 0.929 11 C -0.101 4.101 12 Cl -0.215 7.215 13 O -0.210 6.210 14 C 0.074 3.926 15 C -0.123 4.123 16 C -0.116 4.116 17 C 0.027 3.973 18 N -0.327 5.327 19 C 0.121 3.879 20 N -0.380 5.380 21 N -0.236 5.236 22 N -0.020 5.020 23 C -0.096 4.096 24 H 0.084 0.916 25 H 0.155 0.845 26 H 0.097 0.903 27 H 0.182 0.818 28 H 0.173 0.827 29 H 0.242 0.758 30 H 0.244 0.756 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.117 -9.320 1.908 9.579 hybrid contribution 0.077 0.679 0.004 0.683 sum 1.194 -8.641 1.912 8.931 Atomic orbital electron populations 1.69776 1.06014 1.28281 1.48324 1.24975 0.95209 0.99914 0.93708 0.86098 0.80028 0.81438 0.78056 1.19201 1.20453 1.20425 1.21030 0.94530 0.87536 1.53070 0.90228 1.20671 0.87366 0.82602 0.94146 0.92941 1.25847 0.95481 0.86750 1.02042 1.98651 1.75821 1.48131 1.98899 1.86194 1.46409 1.20743 1.67620 1.18027 0.92247 0.88373 0.93988 1.21884 0.96373 0.99587 0.94488 1.20020 0.99903 0.89027 1.02647 1.21363 0.88231 0.94107 0.93572 1.70550 1.25445 1.02549 1.34181 1.20325 0.88344 0.88295 0.90921 1.40840 1.27842 1.08408 1.60920 1.78617 1.21062 0.90239 1.33703 1.46641 1.14784 1.09219 1.31374 1.19850 1.03119 0.82854 1.03771 0.91645 0.84543 0.90334 0.81819 0.82723 0.75822 0.75627 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.32 11.29 55.43 0.63 -20.70 16 2 C 0.07 1.55 5.29 -17.82 -0.09 1.45 16 3 Si 0.92 18.66 29.54 -169.99 -5.02 13.64 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.52 -12.48 8.89 -34.44 -0.31 -12.79 16 8 H 0.08 1.92 7.81 -52.48 -0.41 1.51 16 9 C 0.21 4.47 2.19 -27.89 -0.06 4.41 16 10 H 0.05 1.17 5.37 -51.93 -0.28 0.89 16 11 C -0.04 -0.79 6.17 37.16 0.23 -0.56 16 12 Cl -0.24 -4.50 25.67 -51.86 -1.33 -5.84 16 13 O -0.30 -6.08 9.71 -19.83 -0.19 -6.27 16 14 C 0.12 2.29 5.91 -39.63 -0.23 2.05 16 15 C -0.10 -1.66 7.07 -39.44 -0.28 -1.94 16 16 C -0.09 -1.52 10.10 -39.42 -0.40 -1.91 16 17 C 0.28 5.06 7.87 -156.29 -1.23 3.83 16 18 N -0.59 -10.61 11.28 -13.19 -0.15 -10.76 16 19 C 0.49 8.18 9.38 -321.72 -3.02 5.17 16 20 N -0.82 -9.32 9.12 29.92 0.27 -9.04 16 21 N -0.39 -7.12 12.81 29.91 0.38 -6.74 16 22 N -0.25 -4.55 3.89 -12.21 -0.05 -4.59 16 23 C 0.03 0.59 11.12 -16.62 -0.18 0.41 16 24 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 25 H 0.14 3.03 5.95 -51.93 -0.31 2.72 16 26 H 0.08 1.58 8.14 -51.92 -0.42 1.15 16 27 H 0.16 2.82 5.20 -52.49 -0.27 2.55 16 28 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.41 3.65 8.96 -40.82 -0.37 3.29 16 30 H 0.41 3.73 8.96 -40.82 -0.37 3.37 16 31 H 0.17 2.69 8.06 -52.48 -0.42 2.27 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -26.99 283.44 -9.17 -36.16 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -2.41 Total: 9.74 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -5.58 Total: 0.12 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 1.09 Total: -51.83 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.19 Total: -6.27 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Atomic # 17 Polarization: -4.50 SS G_CDS: -1.33 Total: -5.84 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.99 -9.17 -36.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234015741.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.084 kcal (2) G-P(sol) polarization free energy of solvation -26.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds