Wall clock time and date at job start Fri Apr 10 2020 14:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48500 * 109.47340 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47015 * 299.99588 * 3 2 1 6 6 H 1.48491 * 109.47205 * 59.99598 * 3 2 1 7 7 C 1.37881 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50690 * 119.99892 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47354 * 300.00034 * 9 7 2 11 11 C 1.53001 * 109.47416 * 59.99331 * 9 7 2 12 12 Cl 1.80302 * 109.47285 * 184.99890 * 11 9 7 13 13 O 1.42903 * 109.47656 * 179.97438 * 9 7 2 14 14 C 1.36030 * 117.00387 * 146.54607 * 13 9 7 15 15 C 1.40554 * 119.95871 * 356.59986 * 14 13 9 16 16 C 1.36217 * 119.57027 * 179.97438 * 15 14 13 17 17 C 1.40585 * 119.36090 * 0.24705 * 16 15 14 18 18 N 1.33066 * 132.66337 * 180.45247 * 17 16 15 19 19 C 1.32916 * 109.61740 * 179.53462 * 18 17 16 20 20 N 1.39349 * 125.27799 * 179.76832 * 19 18 17 21 21 N 1.31833 * 109.44559 * 359.73338 * 19 18 17 22 22 N 1.36492 * 119.80472 * 359.47242 * 17 16 15 23 23 C 1.35677 * 119.95924 * 176.57462 * 14 13 9 24 24 H 0.96999 * 120.00517 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47422 * 305.00282 * 11 9 7 26 26 H 1.09008 * 109.47045 * 65.00095 * 11 9 7 27 27 H 1.07996 * 120.21446 * 359.95415 * 15 14 13 28 28 H 1.08001 * 120.31371 * 179.97438 * 16 15 14 29 29 H 0.97005 * 120.00245 * 179.97438 * 20 19 18 30 30 H 0.96996 * 120.00236 * 359.96023 * 20 19 18 31 31 H 1.08003 * 119.73956 * 0.02599 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3719 -2.5805 -1.2489 12 17 -0.6385 -4.0720 -1.1767 13 8 2.1797 -3.5853 0.0005 14 6 1.8125 -4.7118 0.6687 15 6 0.5994 -4.7432 1.3779 16 6 0.2392 -5.8757 2.0438 17 6 1.0913 -6.9934 2.0140 18 7 1.0037 -8.2087 2.5490 19 6 2.0776 -8.9195 2.2200 20 7 2.3229 -10.2345 2.6105 21 7 2.8743 -8.1879 1.4664 22 7 2.2607 -6.9365 1.3123 23 6 2.6173 -5.8039 0.6492 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2756 -1.7049 -1.2953 26 1 1.0039 -2.6123 -2.1365 27 1 -0.0427 -3.8751 1.3952 28 1 -0.6901 -5.9129 2.5929 29 1 3.1348 -10.6818 2.3249 30 1 1.6818 -10.7025 3.1681 31 1 3.5482 -5.7737 0.1024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234015741.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:28 Heat of formation + Delta-G solvation = 66.132010 kcal Electronic energy + Delta-G solvation = -19451.885589 eV Core-core repulsion = 16182.588710 eV Total energy + Delta-G solvation = -3269.296878 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.062 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.55145 -40.70498 -38.05130 -36.59935 -35.43339 -34.84061 -34.26394 -31.68396 -30.90662 -29.51052 -27.24738 -25.26575 -24.29331 -22.80046 -22.49970 -19.42519 -19.25360 -18.37019 -18.22309 -17.32166 -16.97922 -16.75043 -16.66881 -16.00964 -15.64483 -15.42084 -14.95265 -14.25273 -14.02581 -13.94168 -13.65284 -13.27386 -13.00167 -12.80770 -12.59147 -12.34610 -12.22121 -11.95855 -11.58083 -11.30842 -11.12645 -11.10381 -10.59122 -10.35340 -9.57672 -8.72434 -8.35258 -6.49689 -0.30869 0.08050 0.88698 1.42165 1.49367 1.59599 1.62555 1.85909 2.25894 2.36795 2.42379 2.67830 3.00626 3.11129 3.53770 3.76501 3.98361 4.24273 4.32465 4.40971 4.62320 4.92507 4.99723 5.01792 5.10407 5.26303 5.34566 5.56804 5.69106 5.84199 6.31318 6.34402 6.47860 6.72649 7.22334 7.33231 8.71161 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.030499 B = 0.004540 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.830001 B = 6165.351886 C = 6606.072110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.033 3.967 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.211 3.789 10 H 0.046 0.954 11 C -0.030 4.030 12 Cl -0.223 7.223 13 O -0.309 6.309 14 C 0.111 3.889 15 C -0.099 4.099 16 C -0.083 4.083 17 C 0.267 3.733 18 N -0.601 5.601 19 C 0.485 3.515 20 N -0.801 5.801 21 N -0.412 5.412 22 N -0.256 5.256 23 C 0.037 3.963 24 H 0.276 0.724 25 H 0.121 0.879 26 H 0.079 0.921 27 H 0.162 0.838 28 H 0.183 0.817 29 H 0.424 0.576 30 H 0.425 0.575 31 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 -9.698 2.465 10.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.169 4.169 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.087 0.913 9 C 0.156 3.844 10 H 0.063 0.937 11 C -0.093 4.093 12 Cl -0.197 7.197 13 O -0.221 6.221 14 C 0.060 3.940 15 C -0.125 4.125 16 C -0.105 4.105 17 C 0.015 3.985 18 N -0.340 5.340 19 C 0.115 3.885 20 N -0.359 5.359 21 N -0.258 5.258 22 N -0.030 5.030 23 C -0.092 4.092 24 H 0.086 0.914 25 H 0.139 0.861 26 H 0.097 0.903 27 H 0.180 0.820 28 H 0.200 0.800 29 H 0.257 0.743 30 H 0.259 0.741 31 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.057 -10.098 2.299 10.411 hybrid contribution 0.090 0.735 -0.063 0.743 sum 1.147 -9.364 2.235 9.695 Atomic orbital electron populations 1.69845 1.06831 1.28995 1.48510 1.25591 0.95871 1.02249 0.93239 0.85267 0.78789 0.78235 0.78039 1.19372 1.19999 1.20233 1.21233 0.94320 0.89011 1.53790 0.91275 1.20461 0.87286 0.82428 0.94183 0.93670 1.25513 0.95231 0.86966 1.01558 1.98647 1.75269 1.46916 1.98901 1.86140 1.46386 1.21191 1.68418 1.18108 0.93163 0.87984 0.94739 1.21825 0.95998 0.99883 0.94842 1.20288 1.00393 0.87883 1.01890 1.21759 0.88456 0.94708 0.93602 1.70569 1.26082 1.02721 1.34678 1.20769 0.87716 0.89658 0.90327 1.40897 1.28588 1.06413 1.60037 1.78568 1.21913 0.90408 1.34876 1.46732 1.15107 1.09458 1.31702 1.19983 1.03345 0.82533 1.03361 0.91406 0.86072 0.90279 0.82048 0.79982 0.74284 0.74133 0.79977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -43.35 11.29 21.45 0.24 -43.11 16 2 C 0.03 1.52 5.29 84.66 0.45 1.97 16 3 Si 0.97 37.92 29.54 68.60 2.03 39.95 16 4 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 6 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -26.18 8.89 25.60 0.23 -25.95 16 8 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 9 C 0.21 9.19 2.19 29.85 0.07 9.26 16 10 H 0.05 2.03 5.37 -2.39 -0.01 2.02 16 11 C -0.03 -1.22 6.17 71.98 0.44 -0.78 16 12 Cl -0.22 -8.17 25.67 -2.72 -0.07 -8.24 16 13 O -0.31 -12.64 9.71 -93.89 -0.91 -13.55 16 14 C 0.11 4.01 5.91 22.24 0.13 4.14 16 15 C -0.10 -3.32 7.07 22.36 0.16 -3.16 16 16 C -0.08 -2.55 10.10 22.37 0.23 -2.32 16 17 C 0.27 9.32 7.87 134.06 1.05 10.37 16 18 N -0.60 -20.68 11.28 -195.65 -2.21 -22.88 16 19 C 0.49 15.34 9.38 261.11 2.45 17.79 16 20 N -0.80 -16.24 9.12 -59.25 -0.54 -16.78 16 21 N -0.41 -14.48 12.81 -59.28 -0.76 -15.24 16 22 N -0.26 -9.20 3.89 -192.55 -0.75 -9.95 16 23 C 0.04 1.28 11.12 83.45 0.93 2.21 16 24 H 0.28 12.53 8.31 -92.71 -0.77 11.76 16 25 H 0.12 5.40 5.95 -2.39 -0.01 5.38 16 26 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 27 H 0.16 5.49 5.20 -2.91 -0.02 5.47 16 28 H 0.18 4.46 8.06 -2.91 -0.02 4.43 16 29 H 0.42 6.50 8.96 -92.70 -0.83 5.67 16 30 H 0.43 6.60 8.96 -92.71 -0.83 5.77 16 31 H 0.18 5.67 8.06 -2.91 -0.02 5.65 16 Total: -1.00 -55.82 283.44 2.72 -53.10 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.44 Total: 23.18 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.13 Total: 13.53 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -4.01 Total: -107.97 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.91 Total: -13.55 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Atomic # 17 Polarization: -8.17 SS G_CDS: -0.07 Total: -8.24 kcal Total: -55.82 2.72 -53.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234015741.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.231 kcal (2) G-P(sol) polarization free energy of solvation -55.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds