Wall clock time and date at job start Fri Apr 10 2020 14:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 120.00216 * 2 1 4 4 H 1.48505 * 109.47266 * 270.00021 * 3 2 1 5 5 H 1.48502 * 109.47086 * 29.99743 * 3 2 1 6 6 H 1.48494 * 109.47540 * 150.00114 * 3 2 1 7 7 C 1.39992 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99990 * 164.23351 * 7 2 1 9 9 C 1.40844 * 119.99844 * 344.23060 * 7 2 1 10 10 C 1.40766 * 120.33347 * 333.32420 * 9 7 2 11 11 C 1.36387 * 119.98827 * 180.02562 * 10 9 7 12 12 C 1.50693 * 119.65143 * 179.97438 * 11 10 9 13 13 F 1.39900 * 109.46999 * 89.99952 * 12 11 10 14 14 F 1.39897 * 109.47797 * 210.00226 * 12 11 10 15 15 F 1.39909 * 109.47075 * 330.00332 * 12 11 10 16 16 C 1.38986 * 120.70090 * 0.02562 * 11 10 9 17 17 C 1.37998 * 120.68901 * 359.72041 * 16 11 10 18 18 C 1.39254 * 119.97233 * 0.55625 * 17 16 11 19 19 C 1.47778 * 120.34142 * 179.72474 * 18 17 16 20 20 C 1.46859 * 127.16254 * 309.72275 * 19 18 17 21 21 C 1.34275 * 106.02570 * 179.73558 * 20 19 18 22 22 O 1.34212 * 109.12036 * 0.02562 * 21 20 19 23 23 C 1.33971 * 110.81792 * 359.97438 * 22 21 20 24 24 H 0.97002 * 119.99492 * 0.02562 * 1 2 3 25 25 H 1.07992 * 120.00588 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.65478 * 179.97438 * 16 11 10 27 27 H 1.07995 * 120.00788 * 180.30703 * 17 16 11 28 28 H 1.07998 * 126.98415 * 359.77846 * 20 19 18 29 29 H 1.08001 * 125.44362 * 180.02562 * 21 20 19 30 30 H 1.08006 * 125.81460 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0082 -1.2124 0.0005 8 1 3.0578 -1.2300 -0.2536 9 6 1.3438 -2.4090 0.3326 10 6 0.2142 -2.3855 1.1723 11 6 -0.4235 -3.5486 1.4897 12 6 -1.6316 -3.5147 2.3898 13 9 -2.7865 -3.3635 1.6147 14 9 -1.7084 -4.7100 3.1127 15 9 -1.5217 -2.4390 3.2776 16 6 0.0296 -4.7648 0.9926 17 6 1.1310 -4.8203 0.1630 18 6 1.8071 -3.6507 -0.1748 19 6 2.9911 -3.7013 -1.0577 20 6 4.1638 -4.5745 -0.9200 21 6 4.9734 -4.2728 -1.9479 22 8 4.4047 -3.3074 -2.6867 23 6 3.2197 -2.9507 -2.1734 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1473 -1.4468 1.5651 26 1 -0.4880 -5.6756 1.2552 27 1 1.4706 -5.7708 -0.2210 28 1 4.3391 -5.3102 -0.1490 29 1 5.9294 -4.7335 -2.1482 30 1 2.5580 -2.1973 -2.5749 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239690780.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:19 Heat of formation + Delta-G solvation = -140.303242 kcal Electronic energy + Delta-G solvation = -21572.941628 eV Core-core repulsion = 17690.683652 eV Total energy + Delta-G solvation = -3882.257976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.07078 -48.58165 -48.53849 -42.97468 -39.64833 -35.73961 -34.45723 -32.02741 -31.52909 -29.92675 -27.46107 -26.56794 -23.32654 -23.02845 -21.83476 -20.90141 -19.80998 -19.40920 -19.19840 -18.46711 -18.12455 -16.83745 -16.57867 -16.12821 -15.66136 -15.47312 -15.17894 -15.09610 -15.01408 -14.89138 -14.77947 -14.73020 -14.34809 -13.82031 -13.53544 -13.33025 -13.09703 -12.86679 -12.82506 -12.62946 -12.24700 -11.72262 -11.62728 -11.14300 -10.51982 -9.69213 -9.48365 -9.05956 -8.70309 -6.39090 0.37433 0.90537 1.18565 1.38685 1.45804 1.52403 1.83105 1.87175 2.16935 2.42941 2.59258 2.98566 3.25325 3.35335 3.71269 4.06632 4.26297 4.46200 4.53452 4.59358 4.85498 4.97891 5.11484 5.16266 5.29850 5.38908 5.44450 5.64897 5.75757 5.93869 5.96345 6.18540 6.42854 6.52217 6.81114 6.85704 8.23732 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.007659 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.675028 B = 3654.764146 C = 5376.563395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.040 3.960 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.466 4.466 8 H 0.084 0.916 9 C 0.094 3.906 10 C -0.133 4.133 11 C -0.168 4.168 12 C 0.511 3.489 13 F -0.186 7.186 14 F -0.179 7.179 15 F -0.187 7.187 16 C -0.205 4.205 17 C -0.073 4.073 18 C -0.133 4.133 19 C -0.126 4.126 20 C -0.229 4.229 21 C -0.036 4.036 22 O -0.195 6.195 23 C -0.040 4.040 24 H 0.292 0.708 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.158 0.842 29 H 0.243 0.757 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -4.325 -0.902 6.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.102 0.898 9 C 0.091 3.909 10 C -0.152 4.152 11 C -0.170 4.170 12 C 0.457 3.543 13 F -0.168 7.168 14 F -0.160 7.160 15 F -0.169 7.169 16 C -0.224 4.224 17 C -0.091 4.091 18 C -0.135 4.135 19 C -0.127 4.127 20 C -0.248 4.248 21 C -0.102 4.102 22 O -0.092 6.092 23 C -0.107 4.107 24 H 0.103 0.897 25 H 0.131 0.869 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.176 0.824 29 H 0.259 0.741 30 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.101 -4.039 -1.139 5.868 hybrid contribution -0.489 0.779 0.554 1.074 sum 3.612 -3.260 -0.584 4.901 Atomic orbital electron populations 1.69820 1.08939 1.31043 1.34397 1.26715 0.95344 1.04348 0.91281 0.85312 0.79163 0.76338 0.79775 1.18291 1.19338 1.18428 1.19650 0.97631 0.91172 1.40966 0.89822 1.17782 0.90990 0.92901 0.89200 1.20809 0.98816 0.95860 0.99734 1.19596 0.96730 0.97202 1.03460 1.18521 0.83918 0.72834 0.79004 1.93152 1.52956 1.95440 1.75248 1.93118 1.96759 1.46828 1.79318 1.93125 1.96258 1.56965 1.70530 1.20278 1.01370 0.95197 1.05583 1.20825 0.94523 0.97095 0.96663 1.18455 0.98424 0.93416 1.03189 1.20291 0.95974 0.99758 0.96692 1.23124 0.94783 1.04362 1.02549 1.24530 1.00680 0.92378 0.92601 1.83794 1.29744 1.46561 1.49114 1.24259 0.87045 1.02701 0.96673 0.89745 0.86853 0.85684 0.85427 0.82396 0.74077 0.78356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.40 10.98 21.84 0.24 -40.16 16 2 C 0.04 1.87 5.16 85.27 0.44 2.31 16 3 Si 0.97 36.28 29.59 68.60 2.03 38.31 16 4 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 5 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.47 -23.02 7.77 23.33 0.18 -22.84 16 8 H 0.08 4.07 6.72 -2.91 -0.02 4.05 16 9 C 0.09 4.73 5.58 -21.11 -0.12 4.61 16 10 C -0.13 -6.70 7.95 22.46 0.18 -6.52 16 11 C -0.17 -7.67 5.42 -20.12 -0.11 -7.78 16 12 C 0.51 21.13 3.35 71.23 0.24 21.36 16 13 F -0.19 -7.70 17.30 44.97 0.78 -6.93 16 14 F -0.18 -6.68 16.43 44.97 0.74 -5.94 16 15 F -0.19 -7.87 16.41 44.97 0.74 -7.14 16 16 C -0.20 -8.56 9.38 22.39 0.21 -8.35 16 17 C -0.07 -3.03 9.76 22.46 0.22 -2.81 16 18 C -0.13 -6.06 5.86 -19.60 -0.11 -6.17 16 19 C -0.13 -5.07 5.15 -18.93 -0.10 -5.17 16 20 C -0.23 -7.40 11.13 23.62 0.26 -7.14 16 21 C -0.04 -0.97 12.03 66.91 0.81 -0.17 16 22 O -0.19 -6.42 10.54 1.55 0.02 -6.40 16 23 C -0.04 -1.52 10.50 67.39 0.71 -0.82 16 24 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 25 H 0.11 6.04 5.72 -2.91 -0.02 6.02 16 26 H 0.13 4.56 7.57 -2.91 -0.02 4.54 16 27 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 28 H 0.16 4.45 8.06 -2.91 -0.02 4.42 16 29 H 0.24 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.20 7.56 7.93 -2.91 -0.02 7.54 16 Total: -1.00 -55.54 282.03 8.55 -46.99 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.20 Total: 20.73 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 2.81 Total: -39.47 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.24 Total: -40.16 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: 0.02 Total: -6.40 kcal Atomic # 9 Polarization: -22.26 SS G_CDS: 2.25 Total: -20.01 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Total: -55.54 8.55 -46.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239690780.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.309 kcal (2) G-P(sol) polarization free energy of solvation -55.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds