Wall clock time and date at job start Fri Apr 10 2020 15:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 S 1.81401 * 109.46965 * 270.02342 * 14 13 12 16 16 C 1.81396 * 103.00206 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47418 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47025 * 180.02562 * 17 16 15 19 19 O 1.20820 * 120.00575 * 359.97438 * 18 17 16 20 20 O 1.34234 * 119.99613 * 179.97438 * 18 17 16 21 21 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 22 22 C 1.38101 * 120.07425 * 359.95492 * 21 13 12 23 23 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 25 25 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 26 26 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 27 27 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 28 28 H 1.09001 * 109.47180 * 299.99839 * 16 15 14 29 29 H 1.09000 * 109.47200 * 59.99844 * 16 15 14 30 30 H 1.09007 * 109.46847 * 299.99629 * 17 16 15 31 31 H 1.08991 * 109.47248 * 59.99777 * 17 16 15 32 32 H 0.96705 * 116.99629 * 179.97438 * 20 18 17 33 33 H 1.07999 * 119.96503 * 179.97438 * 21 13 12 34 34 H 1.07992 * 120.03608 * 180.02562 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 16 4.7048 -7.7535 1.2083 16 6 5.6813 -9.2424 0.8620 17 6 6.0382 -9.9359 2.1783 18 6 6.8500 -11.1725 1.8906 19 8 7.1155 -11.4691 0.7498 20 8 7.2782 -11.9446 2.9017 21 6 4.2024 -4.5970 -0.2043 22 6 3.4573 -3.4394 -0.0951 23 1 -0.4850 0.8400 0.0004 24 1 0.3579 -4.7892 -0.2301 25 1 1.6954 -6.8451 -0.4339 26 1 3.8358 -7.8149 -1.0361 27 1 5.3320 -6.8560 -0.9360 28 1 5.0994 -9.9218 0.2392 29 1 6.5961 -8.9635 0.3391 30 1 6.6204 -9.2563 2.8008 31 1 5.1238 -10.2148 2.7017 32 1 7.7952 -12.7276 2.6677 33 1 5.2812 -4.5470 -0.1945 34 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611291091.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:05 Heat of formation + Delta-G solvation = -127.014442 kcal Electronic energy + Delta-G solvation = -18099.355947 eV Core-core repulsion = 14894.974908 eV Total energy + Delta-G solvation = -3204.381038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24580 -40.78986 -38.44480 -37.20153 -34.41020 -34.09818 -32.68973 -31.80457 -28.04008 -27.00050 -26.18777 -23.64862 -22.42843 -21.80772 -19.86090 -19.20580 -18.85515 -17.78269 -17.29375 -16.97620 -16.48286 -16.35178 -16.03419 -15.53243 -15.38343 -15.13406 -14.81487 -14.56582 -14.30791 -13.92456 -13.68862 -13.44494 -13.35250 -12.88409 -12.61330 -12.47713 -12.44287 -12.34665 -12.20961 -12.14038 -11.65715 -11.19712 -10.96700 -10.73838 -9.80527 -8.90334 -8.62825 -8.47431 -6.15363 0.17440 0.59080 1.01173 1.17510 1.35979 1.46416 1.52162 1.69675 2.18169 2.27790 2.85372 3.18675 3.49321 3.60197 3.88241 3.89731 3.95834 4.17811 4.33501 4.34268 4.56448 4.58554 4.64037 4.64284 4.77029 4.83621 5.04793 5.13845 5.27087 5.53949 5.60158 5.69523 5.73005 6.02008 6.17236 6.96911 6.96969 7.76531 8.75279 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.045520 B = 0.002558 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.966969 B =10943.205132 C =11203.861714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.229 6.229 10 C 0.120 3.880 11 C -0.205 4.205 12 C -0.047 4.047 13 C -0.157 4.157 14 C -0.014 4.014 15 S -0.279 6.279 16 C -0.074 4.074 17 C -0.096 4.096 18 C 0.494 3.506 19 O -0.552 6.552 20 O -0.512 6.512 21 C -0.049 4.049 22 C -0.244 4.244 23 H 0.273 0.727 24 H 0.116 0.884 25 H 0.149 0.851 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.429 0.571 33 H 0.141 0.859 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.397 -19.798 3.123 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.135 6.135 10 C 0.068 3.932 11 C -0.225 4.225 12 C -0.066 4.066 13 C -0.159 4.159 14 C -0.161 4.161 15 S -0.049 6.049 16 C -0.222 4.222 17 C -0.134 4.134 18 C 0.336 3.664 19 O -0.444 6.444 20 O -0.326 6.326 21 C -0.069 4.069 22 C -0.263 4.263 23 H 0.082 0.918 24 H 0.134 0.866 25 H 0.167 0.833 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.291 0.709 33 H 0.159 0.841 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.536 -19.008 3.934 23.664 hybrid contribution 0.625 0.019 -1.348 1.486 sum 14.161 -18.989 2.586 23.829 Atomic orbital electron populations 1.70174 1.08031 1.28937 1.48563 1.26607 0.96859 1.02782 0.95777 0.84646 0.77397 0.74219 0.79959 1.18119 1.19657 1.18140 1.21801 0.92572 0.81380 1.53336 0.87986 1.83943 1.36008 1.12631 1.80939 1.19985 0.91652 0.87981 0.93565 1.20445 1.00083 0.90469 1.11461 1.20878 0.93079 0.97079 0.95606 1.19029 0.93299 0.93401 1.10165 1.22065 1.02781 0.96702 0.94531 1.87354 1.70776 1.30645 1.16137 1.23079 1.02488 0.96625 1.00039 1.21024 1.01894 0.92079 0.98396 1.23430 0.76460 0.84326 0.82160 1.90739 1.56365 1.72692 1.24562 1.84500 1.67473 1.40598 1.39988 1.20937 0.99922 0.90799 0.95198 1.21241 0.93036 1.00069 1.11945 0.91783 0.86625 0.83337 0.87962 0.88210 0.89206 0.89299 0.85413 0.85352 0.70862 0.84150 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.29 13.67 21.62 0.30 -56.00 16 2 C -0.02 -1.27 5.49 84.84 0.47 -0.81 16 3 Si 1.02 42.58 29.55 68.60 2.03 44.60 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.41 -24.07 9.49 67.92 0.64 -23.42 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 9 O -0.23 -13.75 9.76 -22.72 -0.22 -13.97 16 10 C 0.12 5.92 6.65 22.58 0.15 6.07 16 11 C -0.21 -8.66 9.99 22.39 0.22 -8.44 16 12 C -0.05 -1.54 9.69 22.25 0.22 -1.33 16 13 C -0.16 -4.76 5.14 -19.84 -0.10 -4.86 16 14 C -0.01 -0.30 6.07 71.23 0.43 0.13 16 15 S -0.28 -6.07 21.72 -56.49 -1.23 -7.30 16 16 C -0.07 -1.17 5.23 71.98 0.38 -0.79 16 17 C -0.10 -1.16 5.82 29.85 0.17 -0.98 16 18 C 0.49 6.93 8.33 71.24 0.59 7.52 16 19 O -0.55 -11.57 16.74 21.98 0.37 -11.20 16 20 O -0.51 -4.78 13.42 -51.46 -0.69 -5.47 16 21 C -0.05 -1.66 9.69 22.25 0.22 -1.44 16 22 C -0.24 -10.50 9.17 22.39 0.21 -10.29 16 23 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 24 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 25 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 26 H 0.10 1.91 8.08 -2.39 -0.02 1.89 16 27 H 0.10 1.90 8.08 -2.39 -0.02 1.88 16 28 H 0.09 1.43 8.10 -2.39 -0.02 1.41 16 29 H 0.09 1.43 8.10 -2.39 -0.02 1.41 16 30 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.43 0.57 9.10 -74.05 -0.67 -0.10 16 33 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 34 H 0.12 5.28 5.64 -2.91 -0.02 5.27 16 Total: -1.00 -74.86 318.02 4.60 -70.26 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.46 Total: 17.72 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 3.59 Total: -38.64 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.30 Total: -56.00 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.54 Total: -30.64 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -6.07 SS G_CDS: -1.23 Total: -7.30 kcal Total: -74.86 4.60 -70.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611291091.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.755 kcal (2) G-P(sol) polarization free energy of solvation -74.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds