Wall clock time and date at job start Fri Apr 10 2020 15:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99897 * 2 1 4 4 H 1.48499 * 109.47197 * 240.00016 * 3 2 1 5 5 H 1.48498 * 109.47538 * 0.02562 * 3 2 1 6 6 H 1.48513 * 109.47090 * 120.00504 * 3 2 1 7 7 C 1.37875 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00288 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46849 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47091 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47411 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00128 * 180.02562 * 12 11 10 14 14 O 1.21630 * 119.99858 * 359.97438 * 13 12 11 15 15 C 1.47168 * 120.00044 * 179.97438 * 13 12 11 16 16 C 1.36613 * 125.15813 * 179.97438 * 15 13 12 17 17 C 1.36805 * 114.74000 * 179.97438 * 16 15 13 18 18 C 1.36607 * 114.74886 * 359.97438 * 17 16 15 19 19 C 1.47164 * 125.16468 * 180.02562 * 18 17 16 20 20 N 1.34780 * 120.00027 * 180.02562 * 19 18 17 21 21 O 1.21622 * 120.00221 * 359.97438 * 19 18 17 22 22 S 1.75833 * 125.16103 * 359.94861 * 15 13 12 23 23 H 0.96997 * 119.99957 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47004 * 60.00728 * 9 7 2 25 25 H 1.08996 * 109.47216 * 299.99972 * 9 7 2 26 26 H 1.08996 * 109.47780 * 59.99928 * 10 9 7 27 27 H 1.09000 * 109.47232 * 299.99807 * 10 9 7 28 28 H 1.09004 * 109.47006 * 59.99471 * 11 10 9 29 29 H 1.09000 * 109.46631 * 299.99814 * 11 10 9 30 30 H 0.96992 * 119.99793 * 359.97438 * 12 11 10 31 31 H 1.07998 * 122.63470 * 0.22052 * 16 15 13 32 32 H 1.08003 * 122.62287 * 180.02562 * 17 16 15 33 33 H 0.96996 * 120.00509 * 0.02562 * 20 19 18 34 34 H 0.97008 * 119.99856 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9830 -7.3713 -0.0015 14 8 0.7872 -7.5936 -0.0024 15 6 2.9393 -8.4899 -0.0014 16 6 2.6016 -9.8137 -0.0018 17 6 3.6640 -10.6756 -0.0023 18 6 4.8897 -10.0725 -0.0028 19 6 6.1813 -10.7778 -0.0038 20 7 7.3322 -10.0764 -0.0037 21 8 6.2103 -11.9937 -0.0038 22 16 4.6899 -8.3255 -0.0015 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.8538 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 3.3858 -5.9234 -0.0002 31 1 1.5764 -10.1532 -0.0057 32 1 3.5430 -11.7488 -0.0030 33 1 7.3092 -9.1067 -0.0026 34 1 8.1836 -10.5413 -0.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171500639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:07 Heat of formation + Delta-G solvation = -59.778790 kcal Electronic energy + Delta-G solvation = -18223.463287 eV Core-core repulsion = 15054.290557 eV Total energy + Delta-G solvation = -3169.172731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.04208 -39.69542 -37.39873 -35.54153 -34.24072 -33.44032 -31.52734 -30.22271 -27.24456 -25.72935 -23.31105 -22.19429 -21.32110 -20.72712 -19.57325 -18.83065 -17.50331 -16.90404 -16.50380 -16.06657 -15.60756 -15.47161 -15.26020 -14.84909 -14.49518 -14.12543 -13.98625 -13.39776 -12.92576 -12.71052 -12.34193 -11.93650 -11.82992 -11.56711 -10.93313 -10.84790 -10.75103 -10.67551 -10.28272 -10.23971 -9.95333 -9.50593 -9.34279 -9.19791 -9.09638 -8.95588 -8.41685 -6.06353 -4.09927 -0.30100 0.85334 1.23213 1.71586 2.67882 2.91434 3.02888 3.06028 3.28632 3.33905 3.35455 4.35547 4.40108 4.58574 4.77853 4.95040 5.29442 5.48748 5.53142 5.65679 5.69302 5.84820 6.04150 6.20428 6.24467 6.48651 6.68227 6.70596 6.89896 7.40809 7.57158 7.65282 7.69109 7.91486 8.05262 8.32292 8.96332 9.54523 11.04884 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.030682 B = 0.002780 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.372212 B =10069.781381 C =10956.405083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.717 5.717 13 C 0.579 3.421 14 O -0.522 6.522 15 C -0.212 4.212 16 C -0.078 4.078 17 C -0.060 4.060 18 C -0.247 4.247 19 C 0.597 3.403 20 N -0.849 5.849 21 O -0.527 6.527 22 S 0.187 5.813 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.396 0.604 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.401 0.599 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.149 -19.192 -0.007 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.368 5.368 13 C 0.363 3.637 14 O -0.399 6.399 15 C -0.333 4.333 16 C -0.110 4.110 17 C -0.094 4.094 18 C -0.369 4.369 19 C 0.381 3.619 20 N -0.413 5.413 21 O -0.405 6.405 22 S 0.455 5.545 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.230 0.770 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 12.973 -18.699 -0.007 22.759 hybrid contribution 0.315 0.242 0.001 0.397 sum 13.288 -18.457 -0.006 22.743 Atomic orbital electron populations 1.69951 1.06069 1.26888 1.50308 1.25027 0.94865 0.99323 0.95200 0.86634 0.79567 0.83055 0.78596 1.20226 1.21241 1.20229 1.21150 0.92951 0.90909 1.51284 0.92675 1.19023 0.93797 0.90738 0.97755 1.21918 0.99880 0.93167 1.01026 1.21779 0.91685 0.84625 1.02552 1.46136 1.10850 1.05647 1.74141 1.17085 0.87231 0.81927 0.77489 1.90844 1.15082 1.84297 1.49722 1.25098 0.96521 0.98580 1.13149 1.20628 1.01621 0.90101 0.98687 1.20609 0.89359 1.02228 0.97162 1.24758 0.97904 0.97160 1.17037 1.17031 0.82788 0.86491 0.75547 1.43685 1.08464 1.11049 1.78057 1.90875 1.87057 1.12831 1.49719 1.83923 1.00420 1.01934 1.68246 0.92807 0.96184 0.96191 0.92581 0.92592 0.91181 0.91190 0.77038 0.81994 0.82213 0.77026 0.75740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.12 1.92 5.67 -4.04 -0.02 1.89 16 12 N -0.72 -9.79 5.55 -61.46 -0.34 -10.14 16 13 C 0.58 8.30 7.80 -12.63 -0.10 8.20 16 14 O -0.52 -9.35 16.82 5.25 0.09 -9.26 16 15 C -0.21 -2.35 6.46 -36.54 -0.24 -2.59 16 16 C -0.08 -0.78 9.88 -40.69 -0.40 -1.18 16 17 C -0.06 -0.55 9.88 -40.69 -0.40 -0.95 16 18 C -0.25 -2.22 6.46 -36.55 -0.24 -2.45 16 19 C 0.60 5.53 8.07 -12.64 -0.10 5.43 16 20 N -0.85 -4.55 8.87 30.37 0.27 -4.28 16 21 O -0.53 -6.76 17.65 5.26 0.09 -6.66 16 22 S 0.19 1.47 21.40 -107.50 -2.30 -0.83 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.40 4.37 7.58 -40.82 -0.31 4.06 16 31 H 0.16 1.52 8.04 -52.49 -0.42 1.10 16 32 H 0.16 1.27 8.04 -52.48 -0.42 0.85 16 33 H 0.40 1.35 7.93 -40.82 -0.32 1.03 16 34 H 0.41 1.55 8.93 -40.82 -0.36 1.19 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -33.93 318.89 -7.78 -41.71 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.92 Total: 0.87 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.19 Total: -6.64 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.66 Total: -40.02 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.18 Total: -15.92 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.30 Total: -0.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.93 -7.78 -41.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171500639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.070 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds