Wall clock time and date at job start Fri Apr 10 2020 15:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99897 * 2 1 4 4 H 1.48499 * 109.47197 * 240.00016 * 3 2 1 5 5 H 1.48498 * 109.47538 * 0.02562 * 3 2 1 6 6 H 1.48513 * 109.47090 * 120.00504 * 3 2 1 7 7 C 1.37875 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00288 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46849 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47091 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47411 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00128 * 180.02562 * 12 11 10 14 14 O 1.21630 * 119.99858 * 359.97438 * 13 12 11 15 15 C 1.47168 * 120.00044 * 179.97438 * 13 12 11 16 16 C 1.36613 * 125.15813 * 179.97438 * 15 13 12 17 17 C 1.36805 * 114.74000 * 179.97438 * 16 15 13 18 18 C 1.36607 * 114.74886 * 359.97438 * 17 16 15 19 19 C 1.47164 * 125.16468 * 180.02562 * 18 17 16 20 20 N 1.34780 * 120.00027 * 180.02562 * 19 18 17 21 21 O 1.21622 * 120.00221 * 359.97438 * 19 18 17 22 22 S 1.75833 * 125.16103 * 359.94861 * 15 13 12 23 23 H 0.96997 * 119.99957 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47004 * 60.00728 * 9 7 2 25 25 H 1.08996 * 109.47216 * 299.99972 * 9 7 2 26 26 H 1.08996 * 109.47780 * 59.99928 * 10 9 7 27 27 H 1.09000 * 109.47232 * 299.99807 * 10 9 7 28 28 H 1.09004 * 109.47006 * 59.99471 * 11 10 9 29 29 H 1.09000 * 109.46631 * 299.99814 * 11 10 9 30 30 H 0.96992 * 119.99793 * 359.97438 * 12 11 10 31 31 H 1.07998 * 122.63470 * 0.22052 * 16 15 13 32 32 H 1.08003 * 122.62287 * 180.02562 * 17 16 15 33 33 H 0.96996 * 120.00509 * 0.02562 * 20 19 18 34 34 H 0.97008 * 119.99856 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9830 -7.3713 -0.0015 14 8 0.7872 -7.5936 -0.0024 15 6 2.9393 -8.4899 -0.0014 16 6 2.6016 -9.8137 -0.0018 17 6 3.6640 -10.6756 -0.0023 18 6 4.8897 -10.0725 -0.0028 19 6 6.1813 -10.7778 -0.0038 20 7 7.3322 -10.0764 -0.0037 21 8 6.2103 -11.9937 -0.0038 22 16 4.6899 -8.3255 -0.0015 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.8538 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 3.3858 -5.9234 -0.0002 31 1 1.5764 -10.1532 -0.0057 32 1 3.5430 -11.7488 -0.0030 33 1 7.3092 -9.1067 -0.0026 34 1 8.1836 -10.5413 -0.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171500639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:06 Heat of formation + Delta-G solvation = -85.832434 kcal Electronic energy + Delta-G solvation = -18224.593058 eV Core-core repulsion = 15054.290557 eV Total energy + Delta-G solvation = -3170.302501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98892 -40.62924 -38.22675 -36.98304 -35.25657 -34.88952 -33.20138 -31.18005 -28.78609 -26.84506 -24.92123 -22.93415 -22.45506 -22.29460 -20.35602 -19.80543 -18.53772 -18.10495 -17.82887 -16.94567 -16.84719 -16.60988 -16.36419 -16.07178 -15.74881 -15.50800 -14.99032 -14.34505 -14.17754 -13.87223 -13.77515 -13.44219 -13.42055 -12.71353 -12.56504 -12.44659 -12.31098 -11.70888 -11.68243 -11.50691 -11.29784 -11.12228 -10.89556 -10.53547 -10.37494 -9.98902 -9.73587 -8.18396 -6.29775 -1.09907 0.12050 0.47851 0.91015 1.43183 1.45778 1.53612 1.86587 1.93191 2.07166 2.31794 2.43376 3.15696 3.57327 3.80003 4.02095 4.12069 4.19604 4.22604 4.53041 4.81568 4.86181 4.92856 4.93451 5.11782 5.16679 5.28671 5.52433 5.71375 5.71934 5.85199 6.16885 6.22401 6.31829 6.87792 6.95680 7.07346 7.39945 8.93478 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.030682 B = 0.002780 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.372212 B =10069.781381 C =10956.405083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.024 3.976 10 C -0.104 4.104 11 C 0.128 3.872 12 N -0.708 5.708 13 C 0.581 3.419 14 O -0.566 6.566 15 C -0.248 4.248 16 C -0.069 4.069 17 C -0.068 4.068 18 C -0.249 4.249 19 C 0.596 3.404 20 N -0.827 5.827 21 O -0.567 6.567 22 S 0.263 5.737 23 H 0.263 0.737 24 H -0.007 1.007 25 H -0.007 1.007 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.411 0.589 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.413 0.587 34 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.147 -19.021 -0.007 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.141 4.141 11 C 0.005 3.995 12 N -0.359 5.359 13 C 0.367 3.633 14 O -0.447 6.447 15 C -0.370 4.370 16 C -0.103 4.103 17 C -0.102 4.102 18 C -0.371 4.371 19 C 0.380 3.620 20 N -0.392 5.392 21 O -0.448 6.448 22 S 0.532 5.468 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.248 0.752 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.244 0.756 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 16.058 -18.497 -0.007 24.495 hybrid contribution -0.554 0.156 0.001 0.576 sum 15.504 -18.340 -0.007 24.015 Atomic orbital electron populations 1.70103 1.07949 1.27847 1.51670 1.26012 0.95718 1.03531 0.94826 0.85488 0.78196 0.77992 0.79291 1.18984 1.21363 1.18993 1.21662 0.93809 0.91969 1.50479 0.91388 1.18936 0.94435 0.92843 0.95204 1.21627 0.98543 0.91559 1.02409 1.21378 0.91746 0.84909 1.01481 1.45864 1.11154 1.04864 1.74025 1.17432 0.87215 0.82447 0.76200 1.90817 1.17207 1.84963 1.51685 1.24811 0.98371 0.97674 1.16104 1.20691 1.02035 0.89925 0.97630 1.20654 0.89171 1.02641 0.97714 1.24964 0.97948 0.98321 1.15902 1.17101 0.83536 0.86060 0.75337 1.43546 1.07932 1.11697 1.76015 1.90864 1.87584 1.14508 1.51847 1.83553 0.96804 1.00074 1.66338 0.92841 0.98838 0.98845 0.91094 0.91104 0.92423 0.92434 0.75240 0.82089 0.81436 0.75572 0.74518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.21 13.29 21.45 0.28 -55.92 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.54 -29.26 9.11 25.60 0.23 -29.03 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.74 5.27 30.60 0.16 -3.57 16 11 C 0.13 4.25 5.67 86.38 0.49 4.74 16 12 N -0.71 -18.48 5.55 -466.61 -2.59 -21.07 16 13 C 0.58 16.38 7.80 86.59 0.68 17.05 16 14 O -0.57 -20.69 16.82 -4.13 -0.07 -20.76 16 15 C -0.25 -5.17 6.46 24.24 0.16 -5.02 16 16 C -0.07 -1.33 9.88 21.55 0.21 -1.12 16 17 C -0.07 -1.15 9.88 21.55 0.21 -0.94 16 18 C -0.25 -3.92 6.46 24.23 0.16 -3.76 16 19 C 0.60 9.77 8.07 86.59 0.70 10.47 16 20 N -0.83 -6.48 8.87 -176.07 -1.56 -8.04 16 21 O -0.57 -13.85 17.65 -4.10 -0.07 -13.92 16 22 S 0.26 3.39 21.40 -56.49 -1.21 2.18 16 23 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.41 8.03 7.58 -92.71 -0.70 7.33 16 31 H 0.16 3.02 8.04 -2.91 -0.02 3.00 16 32 H 0.17 2.52 8.04 -2.91 -0.02 2.49 16 33 H 0.41 1.29 7.93 -92.71 -0.74 0.56 16 34 H 0.42 2.01 8.93 -92.70 -0.83 1.19 16 Total: -1.00 -74.46 318.89 -0.68 -75.14 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -1.10 Total: 7.22 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 3.61 Total: -9.57 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -3.87 Total: -85.03 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.14 Total: -34.68 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.21 Total: 2.18 kcal Total: -74.46 -0.68 -75.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171500639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.690 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds