Wall clock time and date at job start Fri Apr 10 2020 15:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00140 * 3 2 1 5 5 H 1.48499 * 109.47078 * 29.99851 * 3 2 1 6 6 H 1.48503 * 109.47230 * 150.00520 * 3 2 1 7 7 C 1.37884 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99838 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21682 * 119.99992 * 0.02562 * 13 12 11 15 15 C 1.46726 * 119.99990 * 180.02562 * 13 12 11 16 16 C 1.34877 * 125.05848 * 180.02562 * 15 13 12 17 17 C 1.38941 * 113.65683 * 180.02562 * 16 15 13 18 18 C 1.47334 * 122.96183 * 180.02562 * 17 16 15 19 19 N 1.34772 * 119.99976 * 180.02562 * 18 17 16 20 20 O 1.21624 * 119.99695 * 359.97438 * 18 17 16 21 21 C 1.36651 * 114.07424 * 359.97438 * 17 16 15 22 22 S 1.70598 * 110.53286 * 359.72782 * 21 17 16 23 23 H 0.96992 * 120.00108 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 25 25 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 26 26 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 27 27 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 28 28 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 29 29 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 30 30 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 31 31 H 1.08004 * 123.16983 * 0.02562 * 16 15 13 32 32 H 0.96998 * 120.00040 * 359.97438 * 19 18 17 33 33 H 0.97002 * 119.99880 * 180.02562 * 19 18 17 34 34 H 1.08002 * 124.73555 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 -0.0012 12 7 6.0399 -4.0179 -0.0004 13 6 7.3649 -4.2641 -0.0018 14 8 8.1557 -3.3393 -0.0032 15 6 7.8540 -5.6475 -0.0016 16 6 9.1532 -6.0099 -0.0025 17 6 9.3482 -7.3856 -0.0026 18 6 10.6847 -8.0057 -0.0029 19 7 10.8046 -9.3481 -0.0036 20 8 11.6796 -7.3062 -0.0035 21 6 8.1911 -8.1126 -0.0014 22 16 6.8345 -7.0783 0.0076 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6797 0.8894 25 1 3.8745 -0.6809 -0.8905 26 1 3.6578 -3.1506 -0.8897 27 1 3.6585 -3.1503 0.8903 28 1 5.9156 -2.1224 0.8884 29 1 5.9142 -2.1231 -0.8916 30 1 5.4095 -4.7551 0.0003 31 1 9.9653 -5.2979 -0.0029 32 1 10.0111 -9.9060 -0.0036 33 1 11.6845 -9.7564 -0.0034 34 1 8.1423 -9.1915 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264196809.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:00 Heat of formation + Delta-G solvation = -57.911578 kcal Electronic energy + Delta-G solvation = -18302.710736 eV Core-core repulsion = 15133.618974 eV Total energy + Delta-G solvation = -3169.091762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35021 -39.56626 -37.20053 -35.58371 -34.19101 -33.40171 -31.65398 -30.26346 -27.39240 -25.88391 -23.94895 -22.25653 -20.93188 -20.29494 -19.46553 -18.90768 -17.49637 -17.37257 -16.77366 -15.86925 -15.69443 -15.63074 -15.17402 -14.68823 -14.20951 -14.17382 -13.66693 -13.49877 -13.06900 -13.03012 -12.72559 -12.06825 -11.97597 -11.66088 -11.13762 -10.92523 -10.50937 -10.35003 -10.17492 -10.05236 -9.85315 -9.70175 -9.43826 -9.25806 -9.10771 -8.96258 -8.57610 -6.08472 -4.07425 -0.04397 0.93075 1.30607 1.33384 2.82997 2.95683 3.14525 3.22250 3.30257 3.38087 3.42117 4.28917 4.42720 4.54544 4.67414 4.75036 5.25632 5.31561 5.42900 5.59092 5.66157 5.80348 5.94898 6.21128 6.30562 6.38494 6.59378 6.72923 6.83513 7.19034 7.32584 7.42615 7.73410 7.80610 8.09731 8.47591 8.95024 9.53703 11.04674 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.046041 B = 0.002727 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.004211 B =10264.264692 C =10846.516218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.720 5.720 13 C 0.583 3.417 14 O -0.526 6.526 15 C -0.263 4.263 16 C -0.017 4.017 17 C -0.163 4.163 18 C 0.583 3.417 19 N -0.850 5.850 20 O -0.534 6.534 21 C -0.207 4.207 22 S 0.257 5.743 23 H 0.264 0.736 24 H 0.020 0.980 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.396 0.604 31 H 0.165 0.835 32 H 0.400 0.600 33 H 0.407 0.593 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.482 -22.447 0.040 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.008 4.008 12 N -0.370 5.370 13 C 0.368 3.632 14 O -0.403 6.403 15 C -0.383 4.383 16 C -0.048 4.048 17 C -0.181 4.181 18 C 0.367 3.633 19 N -0.414 5.414 20 O -0.411 6.411 21 C -0.347 4.347 22 S 0.525 5.475 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.182 0.818 32 H 0.228 0.772 33 H 0.238 0.762 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 15.804 -21.247 0.054 26.481 hybrid contribution 1.478 0.078 -0.033 1.480 sum 17.282 -21.169 0.020 27.328 Atomic orbital electron populations 1.69905 1.06319 1.26996 1.50914 1.25029 0.94754 0.99256 0.94434 0.86777 0.80417 0.83505 0.78614 1.20232 1.21359 1.18865 1.21082 0.89253 0.94516 1.51216 0.90990 1.19502 0.97324 0.91318 0.96766 1.21728 0.90357 1.01264 1.01861 1.21755 0.96350 0.80299 1.02427 1.46055 1.05854 1.10463 1.74675 1.16947 0.82842 0.86276 0.77126 1.90853 1.55327 1.44273 1.49885 1.24342 0.97867 0.97963 1.18126 1.20343 0.96305 0.94595 0.93514 1.19032 0.93359 0.93722 1.12030 1.17613 0.87998 0.82287 0.75390 1.43660 1.12581 1.06824 1.78382 1.90875 1.38689 1.62144 1.49345 1.26102 0.97517 1.05344 1.05763 1.83162 1.06350 0.93340 1.64637 0.92670 0.96216 0.96663 0.91998 0.91966 0.91298 0.91297 0.76967 0.81779 0.77156 0.76215 0.80615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 8 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 10 C -0.11 -2.06 5.27 -26.73 -0.14 -2.20 16 11 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 12 N -0.72 -9.77 5.55 -61.60 -0.34 -10.11 16 13 C 0.58 8.56 7.78 -12.83 -0.10 8.46 16 14 O -0.53 -9.74 16.79 5.21 0.09 -9.65 16 15 C -0.26 -3.00 6.37 -37.35 -0.24 -3.24 16 16 C -0.02 -0.19 9.47 -40.51 -0.38 -0.58 16 17 C -0.16 -1.48 5.82 -106.51 -0.62 -2.10 16 18 C 0.58 5.57 8.06 -12.56 -0.10 5.47 16 19 N -0.85 -3.95 8.84 30.41 0.27 -3.68 16 20 O -0.53 -7.51 17.53 5.26 0.09 -7.41 16 21 C -0.21 -1.21 10.41 30.16 0.31 -0.90 16 22 S 0.26 1.79 22.09 -107.50 -2.37 -0.58 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 25 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.40 4.31 7.55 -40.82 -0.31 4.00 16 31 H 0.16 2.17 7.95 -52.48 -0.42 1.75 16 32 H 0.40 0.57 7.29 -40.82 -0.30 0.27 16 33 H 0.41 1.43 8.93 -40.82 -0.36 1.06 16 34 H 0.18 0.30 6.99 -52.49 -0.37 -0.06 16 LS Contribution 313.35 15.07 4.72 4.72 Total: -1.00 -36.10 313.35 -7.07 -43.17 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.80 Total: -0.02 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.84 Total: -6.63 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.70 Total: -40.47 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.18 Total: -17.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.37 Total: -0.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.10 -7.07 -43.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264196809.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.738 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds