Wall clock time and date at job start Fri Apr 10 2020 15:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99592 * 2 1 4 4 H 1.48497 * 109.47423 * 274.16556 * 3 2 1 5 5 H 1.48502 * 109.46939 * 34.16771 * 3 2 1 6 6 H 1.48501 * 109.46837 * 154.16531 * 3 2 1 7 7 C 1.37879 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99459 * 4.34083 * 7 2 1 9 9 C 1.50695 * 119.99617 * 184.34356 * 7 2 1 10 10 C 1.53003 * 115.55062 * 84.63171 * 9 7 2 11 11 N 1.46501 * 109.47229 * 65.62687 * 10 9 7 12 12 S 1.65601 * 119.99772 * 159.57737 * 11 10 9 13 13 O 1.42096 * 106.40405 * 312.25260 * 12 11 10 14 14 O 1.42105 * 106.40004 * 179.33248 * 12 11 10 15 15 C 1.76199 * 107.21887 * 65.79710 * 12 11 10 16 16 C 1.38227 * 119.62148 * 149.99641 * 15 12 11 17 17 C 1.38622 * 119.15980 * 180.02562 * 16 15 12 18 18 C 1.38673 * 118.42654 * 359.97438 * 17 16 15 19 19 C 1.38187 * 119.15694 * 0.28426 * 18 17 16 20 20 N 1.31859 * 119.61307 * 330.01823 * 15 12 11 21 21 C 1.53004 * 117.49704 * 230.29568 * 9 7 2 22 22 C 1.52998 * 117.49992 * 298.95704 * 9 7 2 23 23 H 0.96999 * 120.00623 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47110 * 305.63248 * 10 9 7 25 25 H 1.09001 * 109.47068 * 185.62699 * 10 9 7 26 26 H 0.97001 * 120.00080 * 339.58321 * 11 10 9 27 27 H 1.07999 * 120.41746 * 0.04310 * 16 15 12 28 28 H 1.08005 * 120.78762 * 180.02562 * 17 16 15 29 29 H 1.07995 * 120.41992 * 180.02562 * 18 17 16 30 30 H 1.08003 * 119.61381 * 179.69641 * 19 18 17 31 31 H 1.09004 * 117.49991 * 215.00992 * 21 9 7 32 32 H 1.09005 * 117.49533 * 0.02798 * 21 9 7 33 33 H 1.08996 * 117.49925 * 359.97438 * 22 9 7 34 34 H 1.08996 * 117.49947 * 144.98053 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4085 2.0974 -1.3963 5 1 1.4932 2.6256 0.7863 6 1 3.5879 1.4164 0.6101 7 6 2.0046 -1.1940 0.0005 8 1 1.4669 -2.1280 -0.0698 9 6 3.5083 -1.1957 0.0994 10 6 4.0765 -1.1188 1.5179 11 7 3.7226 -2.3360 2.2524 12 16 4.5890 -2.7751 3.5936 13 8 5.9606 -2.6761 3.2355 14 8 3.9971 -3.9722 4.0795 15 6 4.3057 -1.5454 4.8233 16 6 4.3457 -1.8941 6.1602 17 6 4.1209 -0.9191 7.1196 18 6 3.8636 0.3762 6.6967 19 6 3.8342 0.6489 5.3423 20 7 4.0576 -0.3031 4.4574 21 6 4.2829 -2.0238 -0.9279 22 6 4.2903 -0.4954 -1.0138 23 1 -0.4851 0.8400 -0.0004 24 1 3.6596 -0.2515 2.0298 25 1 5.1615 -1.0258 1.4702 26 1 2.9808 -2.8847 1.9530 27 1 4.5498 -2.9133 6.4536 28 1 4.1463 -1.1624 8.1716 29 1 3.6844 1.1610 7.4166 30 1 3.6296 1.6542 5.0046 31 1 5.1972 -2.5138 -0.5931 32 1 3.7047 -2.5670 -1.6755 33 1 3.7171 -0.0339 -1.8178 34 1 5.2093 0.0203 -0.7355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429927404.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:48 Heat of formation + Delta-G solvation = -33.684231 kcal Electronic energy + Delta-G solvation = -20259.143176 eV Core-core repulsion = 17091.101991 eV Total energy + Delta-G solvation = -3168.041186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11055 -39.06399 -38.32632 -37.09371 -34.99699 -34.15530 -33.61017 -32.58238 -28.13809 -26.61034 -25.21055 -24.74039 -23.25905 -21.10112 -20.63764 -19.25205 -18.65249 -18.21637 -17.41351 -17.17346 -16.99368 -16.79306 -15.94587 -15.72582 -15.23751 -15.07417 -14.71158 -14.33654 -14.31148 -14.04385 -13.54298 -13.39284 -13.30289 -13.22695 -12.95594 -12.71996 -12.35634 -12.09508 -11.86412 -11.38484 -11.09698 -11.03310 -10.82829 -10.65146 -10.58807 -10.28919 -10.01926 -8.23409 -6.30132 -0.69168 -0.42930 0.14776 1.40625 1.44482 1.58771 1.80970 2.43529 2.44317 2.52674 3.11386 3.20492 3.37482 3.63195 3.84996 3.94501 3.98428 4.07062 4.20064 4.43384 4.45704 4.52760 4.56569 4.70533 4.85807 4.91915 4.99906 5.15910 5.22978 5.49439 5.52717 5.55929 5.76095 6.15254 6.36467 6.56393 6.78044 7.40190 8.91355 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.007148 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.767772 B = 3916.222580 C = 4752.464627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.224 1.224 7 C -0.479 4.479 8 H 0.038 0.962 9 C -0.034 4.034 10 C 0.164 3.836 11 N -1.089 6.089 12 S 2.721 3.279 13 O -0.979 6.979 14 O -0.977 6.977 15 C -0.462 4.462 16 C -0.100 4.100 17 C -0.085 4.085 18 C -0.108 4.108 19 C 0.062 3.938 20 N -0.432 5.432 21 C -0.166 4.166 22 C -0.189 4.189 23 H 0.263 0.737 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.423 0.577 27 H 0.164 0.836 28 H 0.189 0.811 29 H 0.188 0.812 30 H 0.185 0.815 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.398 1.993 14.862 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.173 4.173 3 Si 0.756 3.244 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.146 1.146 7 C -0.517 4.517 8 H 0.056 0.944 9 C -0.036 4.036 10 C 0.038 3.962 11 N -0.851 5.851 12 S 2.809 3.191 13 O -0.968 6.968 14 O -0.967 6.967 15 C -0.683 4.683 16 C -0.122 4.122 17 C -0.111 4.111 18 C -0.127 4.127 19 C -0.099 4.099 20 N -0.143 5.143 21 C -0.203 4.203 22 C -0.227 4.227 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.259 0.741 27 H 0.182 0.818 28 H 0.206 0.794 29 H 0.205 0.795 30 H 0.202 0.798 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.926 1.641 14.120 17.929 hybrid contribution -1.014 0.886 0.621 1.483 sum 9.912 2.527 14.741 17.943 Atomic orbital electron populations 1.70052 1.08304 1.27866 1.52538 1.25765 0.95107 1.02770 0.93708 0.85998 0.81116 0.78834 0.78482 1.20260 1.22605 1.14577 1.20348 0.88917 0.92876 1.49530 0.94365 1.19512 0.92516 1.03424 0.88179 1.20964 0.97727 0.85557 0.91926 1.54866 1.50115 1.37225 1.42869 1.01101 0.73160 0.72428 0.72434 1.93555 1.33661 1.87053 1.82568 1.93567 1.78476 1.43738 1.80952 1.33386 1.13120 1.09104 1.12646 1.22236 0.95019 1.03040 0.91927 1.22240 0.94696 0.92243 1.01933 1.22929 0.93778 0.98755 0.97243 1.23664 0.95678 0.99477 0.91043 1.67808 1.06951 0.99510 1.40047 1.22890 1.01678 0.92906 1.02849 1.23065 1.01968 0.95609 1.02062 0.92774 0.91575 0.91251 0.74137 0.81832 0.79411 0.79524 0.79821 0.88355 0.90017 0.90275 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.79 13.96 21.45 0.30 -57.49 16 2 C 0.02 1.35 5.47 84.65 0.46 1.81 16 3 Si 0.93 42.86 24.94 68.60 1.71 44.57 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.22 -9.21 5.69 99.48 0.57 -8.65 16 7 C -0.48 -25.97 9.05 25.60 0.23 -25.74 16 8 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 9 C -0.03 -1.50 0.89 -52.93 -0.05 -1.54 16 10 C 0.16 6.63 5.13 86.38 0.44 7.07 16 11 N -1.09 -41.28 5.91 -187.48 -1.11 -42.39 16 12 S 2.72 93.42 5.74 -56.49 -0.32 93.09 16 13 O -0.98 -37.12 17.40 -128.00 -2.23 -39.34 16 14 O -0.98 -35.48 17.65 -128.00 -2.26 -37.74 16 15 C -0.46 -14.23 6.77 84.69 0.57 -13.66 16 16 C -0.10 -2.34 9.57 22.36 0.21 -2.13 16 17 C -0.08 -1.35 10.18 22.47 0.23 -1.12 16 18 C -0.11 -1.67 10.11 22.36 0.23 -1.45 16 19 C 0.06 1.45 11.18 84.67 0.95 2.40 16 20 N -0.43 -13.66 8.63 -193.30 -1.67 -15.33 16 21 C -0.17 -6.43 9.96 30.62 0.30 -6.12 16 22 C -0.19 -7.43 7.35 30.62 0.23 -7.20 16 23 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.07 2.76 5.98 -2.39 -0.01 2.74 16 25 H 0.07 2.58 7.58 -2.39 -0.02 2.56 16 26 H 0.42 16.32 8.39 -96.74 -0.81 15.51 16 27 H 0.16 3.09 7.94 -2.91 -0.02 3.07 16 28 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 29 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 30 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.10 3.36 8.14 -2.38 -0.02 3.35 16 32 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 33 H 0.08 3.25 7.17 -2.39 -0.02 3.24 16 34 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -74.72 301.81 -1.59 -76.31 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.17 Total: 25.98 kcal Atomic # 6 Polarization: -51.47 SS G_CDS: 3.81 Total: -47.67 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -2.48 Total: -115.20 kcal Atomic # 8 Polarization: -72.60 SS G_CDS: -4.49 Total: -77.08 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.71 Total: 44.57 kcal Atomic # 16 Polarization: 93.42 SS G_CDS: -0.32 Total: 93.09 kcal Total: -74.72 -1.59 -76.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429927404.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.628 kcal (2) G-P(sol) polarization free energy of solvation -74.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds