Wall clock time and date at job start Fri Apr 10 2020 14:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99891 * 2 1 4 4 H 1.48495 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46826 * 299.99638 * 3 2 1 6 6 H 1.48501 * 109.47581 * 59.99587 * 3 2 1 7 7 C 1.37873 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00390 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99843 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00298 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99993 * 0.02562 * 11 10 9 13 13 C 1.50704 * 120.00337 * 179.97438 * 11 10 9 14 14 O 1.45195 * 109.47054 * 179.97438 * 13 11 10 15 15 C 1.34698 * 117.00079 * 179.97438 * 14 13 11 16 16 O 1.21452 * 119.99902 * 0.02562 * 15 14 13 17 17 C 1.47943 * 120.00484 * 180.02562 * 15 14 13 18 18 C 1.39425 * 119.69808 * 180.02562 * 17 15 14 19 19 C 1.38455 * 119.09028 * 179.97438 * 18 17 15 20 20 C 1.38908 * 118.47187 * 359.97438 * 19 18 17 21 21 F 1.35097 * 120.34540 * 179.97438 * 20 19 18 22 22 C 1.38903 * 119.29973 * 359.97438 * 20 19 18 23 23 N 1.31434 * 120.86541 * 0.02562 * 22 20 19 24 24 H 0.96997 * 120.00634 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46996 * 60.00509 * 9 7 2 26 26 H 1.08999 * 109.47123 * 300.00137 * 9 7 2 27 27 H 0.96999 * 120.00025 * 359.97438 * 10 9 7 28 28 H 1.09001 * 109.46713 * 60.00089 * 13 11 10 29 29 H 1.08999 * 109.47166 * 299.99863 * 13 11 10 30 30 H 1.07998 * 120.45284 * 0.25025 * 18 17 15 31 31 H 1.08000 * 120.76345 * 180.02562 * 19 18 17 32 32 H 1.08007 * 119.56330 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6126 0.0027 11 6 1.7539 -4.8833 0.0033 12 8 0.5615 -5.1050 0.0026 13 6 2.7332 -6.0287 0.0038 14 8 2.0073 -7.2862 0.0050 15 6 2.7409 -8.4158 0.0050 16 8 3.9537 -8.3523 0.0044 17 6 2.0693 -9.7341 0.0057 18 6 2.8349 -10.8993 0.0062 19 6 2.1934 -12.1263 0.0073 20 6 0.8044 -12.1473 0.0085 21 9 0.1396 -13.3234 0.0091 22 6 0.1064 -10.9464 0.0089 23 7 0.7429 -9.7965 0.0078 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 3.1567 -3.4354 0.0022 28 1 3.3599 -5.9705 0.8937 29 1 3.3598 -5.9714 -0.8863 30 1 3.9135 -10.8456 0.0102 31 1 2.7598 -13.0458 0.0082 32 1 -0.9736 -10.9578 0.0094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751844368.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:42 Heat of formation + Delta-G solvation = -149.831332 kcal Electronic energy + Delta-G solvation = -20259.812094 eV Core-core repulsion = 16520.521216 eV Total energy + Delta-G solvation = -3739.290878 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.18644 -42.07084 -40.93676 -40.19025 -37.66206 -36.18414 -34.41859 -33.80974 -32.57400 -30.77273 -28.58807 -26.10650 -25.10812 -24.53197 -22.59709 -21.65452 -19.79442 -19.22170 -18.79165 -18.40198 -17.92601 -17.90540 -17.38150 -16.97536 -16.92883 -16.24762 -16.22062 -15.73386 -15.08711 -14.90170 -14.82841 -14.50801 -14.24586 -14.11697 -13.89136 -13.63263 -13.56897 -12.90931 -12.75554 -12.21985 -12.14495 -11.95032 -11.46628 -11.20008 -10.95600 -10.83036 -10.82942 -10.28303 -9.92896 -8.29408 -6.46051 -0.86563 -0.07977 1.07419 1.09022 1.44874 1.45475 1.55963 1.59207 2.29768 2.44662 2.46892 2.73971 3.00252 3.05962 3.49642 3.59170 3.64659 3.72666 3.95137 4.04256 4.05175 4.51098 4.60989 4.72530 5.01511 5.10652 5.21940 5.32186 5.42392 5.63343 5.82261 6.21023 6.60022 6.63598 6.78678 7.21050 7.36826 8.83095 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.049051 B = 0.002573 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.699883 B =10879.060567 C =11429.313445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.498 3.502 12 O -0.583 6.583 13 C 0.058 3.942 14 O -0.331 6.331 15 C 0.525 3.475 16 O -0.505 6.505 17 C 0.054 3.946 18 C -0.062 4.062 19 C -0.101 4.101 20 C 0.088 3.912 21 F -0.118 7.118 22 C 0.069 3.931 23 N -0.441 5.441 24 H 0.269 0.731 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.413 0.587 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.183 0.817 31 H 0.199 0.801 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.191 -25.687 0.023 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.349 5.349 11 C 0.284 3.716 12 O -0.463 6.463 13 C -0.019 4.019 14 O -0.246 6.246 15 C 0.368 3.632 16 O -0.393 6.393 17 C -0.082 4.082 18 C -0.082 4.082 19 C -0.127 4.127 20 C 0.066 3.934 21 F -0.096 7.096 22 C -0.093 4.093 23 N -0.152 5.152 24 H 0.078 0.922 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.250 0.750 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.200 0.800 31 H 0.216 0.784 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 8.103 -24.877 0.024 26.164 hybrid contribution 0.410 0.317 -0.001 0.518 sum 8.512 -24.560 0.023 25.993 Atomic orbital electron populations 1.70139 1.08300 1.28572 1.49969 1.26072 0.95778 1.03948 0.93874 0.85089 0.79122 0.77249 0.77614 1.17520 1.20540 1.20530 1.21639 0.94458 0.90297 1.52844 0.89465 1.18636 0.88615 0.83867 0.94548 1.46015 1.11733 1.04599 1.72587 1.20698 0.89302 0.84764 0.76862 1.90708 1.19038 1.85284 1.51308 1.22870 0.92599 0.78810 1.07628 1.86726 1.40503 1.14342 1.82981 1.21028 0.85085 0.84555 0.72494 1.90843 1.14116 1.87794 1.46557 1.20115 0.90275 0.91126 1.06636 1.22227 1.03441 0.89278 0.93216 1.22053 0.92103 1.00635 0.97899 1.19206 0.91827 0.82348 0.99979 1.91586 1.80597 1.44378 1.93032 1.23390 1.02718 0.85193 0.98004 1.67695 1.09624 1.29712 1.08168 0.92214 0.99040 0.99049 0.75014 0.85222 0.85212 0.80013 0.78354 0.78904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.44 0.28 -55.76 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.99 42.00 29.54 68.60 2.03 44.03 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -29.77 9.28 25.60 0.24 -29.53 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.27 14.50 5.43 85.63 0.46 14.97 16 10 N -0.70 -29.07 5.55 -466.78 -2.59 -31.66 16 11 C 0.50 20.47 7.91 87.66 0.69 21.17 16 12 O -0.58 -30.48 16.50 15.75 0.26 -30.22 16 13 C 0.06 1.69 5.95 71.24 0.42 2.11 16 14 O -0.33 -11.00 9.57 -49.69 -0.48 -11.47 16 15 C 0.52 14.30 7.95 70.39 0.56 14.86 16 16 O -0.50 -13.46 16.11 19.99 0.32 -13.14 16 17 C 0.05 1.21 6.74 41.86 0.28 1.49 16 18 C -0.06 -0.83 9.63 22.61 0.22 -0.61 16 19 C -0.10 -0.91 10.15 22.48 0.23 -0.68 16 20 C 0.09 1.11 7.36 22.59 0.17 1.28 16 21 F -0.12 -1.43 17.28 44.97 0.78 -0.66 16 22 C 0.07 1.19 11.17 84.91 0.95 2.14 16 23 N -0.44 -10.96 10.11 -184.77 -1.87 -12.83 16 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.41 13.67 8.32 -92.71 -0.77 12.90 16 28 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.18 1.70 7.64 -2.91 -0.02 1.68 16 31 H 0.20 0.23 8.06 -2.91 -0.02 0.21 16 32 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -78.33 306.83 3.83 -74.50 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.41 Total: 9.41 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 4.68 Total: 27.81 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -4.17 Total: -100.25 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: 0.11 Total: -54.83 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.78 Total: -0.66 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -78.33 3.83 -74.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751844368.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.334 kcal (2) G-P(sol) polarization free energy of solvation -78.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds