Wall clock time and date at job start Fri Apr 10 2020 14:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 119.99732 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99686 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99834 * 3 2 1 7 7 C 1.40023 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00266 * 179.97438 * 7 2 1 9 9 C 1.41315 * 119.99628 * 0.02562 * 7 2 1 10 10 C 1.40595 * 119.78180 * 179.97438 * 9 7 2 11 11 C 1.38354 * 119.14399 * 179.97438 * 10 9 7 12 12 C 1.38641 * 118.68349 * 359.97438 * 11 10 9 13 13 C 1.39757 * 119.48912 * 0.02562 * 12 11 10 14 14 N 1.38821 * 119.57864 * 180.02562 * 13 12 11 15 15 C 1.46473 * 111.00065 * 305.84742 * 14 13 12 16 16 C 1.53179 * 109.89898 * 163.00335 * 15 14 13 17 17 S 1.81822 * 108.67796 * 62.64228 * 16 15 14 18 18 O 1.42093 * 108.70011 * 193.42424 * 17 16 15 19 19 O 1.42100 * 108.82470 * 61.98326 * 17 16 15 20 20 C 1.81816 * 101.01603 * 307.68238 * 17 16 15 21 21 C 1.46477 * 110.99912 * 179.97438 * 14 13 12 22 22 N 1.31983 * 120.83136 * 359.73771 * 13 12 11 23 23 H 0.97005 * 120.00232 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.42841 * 359.95471 * 10 9 7 25 25 H 1.07997 * 120.65656 * 179.97438 * 11 10 9 26 26 H 1.07998 * 120.25018 * 179.97438 * 12 11 10 27 27 H 1.09001 * 109.40195 * 283.14042 * 15 14 13 28 28 H 1.09002 * 109.39497 * 42.87583 * 15 14 13 29 29 H 1.08994 * 109.60696 * 302.88286 * 16 15 14 30 30 H 1.09003 * 109.60004 * 182.39579 * 16 15 14 31 31 H 1.08997 * 109.60204 * 292.55257 * 20 17 16 32 32 H 1.09002 * 109.59822 * 172.07519 * 20 17 16 33 33 H 1.09004 * 109.39951 * 317.13057 * 21 14 13 34 34 H 1.09006 * 109.39935 * 76.85828 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3011 -2.4364 0.0005 10 6 2.0087 -3.6513 0.0005 11 6 1.3036 -4.8417 0.0011 12 6 -0.0820 -4.7944 0.0022 13 6 -0.7281 -3.5552 0.0021 14 7 -2.1154 -3.5057 0.0037 15 6 -2.6699 -4.2880 -1.1035 16 6 -4.1534 -4.5723 -0.8494 17 16 -5.0487 -2.9907 -0.7962 18 8 -6.3441 -3.2183 -0.2585 19 8 -4.9214 -2.3491 -2.0577 20 6 -4.0627 -2.0744 0.4261 21 6 -2.5912 -2.1203 0.0040 22 7 -0.0359 -2.4315 0.0063 23 1 -0.4851 0.8401 -0.0004 24 1 3.0886 -3.6553 -0.0002 25 1 1.8223 -5.7890 0.0007 26 1 -0.6576 -5.7083 0.0022 27 1 -2.5625 -3.7276 -2.0323 28 1 -2.1296 -5.2310 -1.1867 29 1 -4.2688 -5.0900 0.1028 30 1 -4.5505 -5.1903 -1.6548 31 1 -4.1761 -2.5355 1.4072 32 1 -4.3998 -1.0385 0.4653 33 1 -1.9953 -1.5330 0.7027 34 1 -2.4889 -1.7022 -0.9975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116662099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:04 Heat of formation + Delta-G solvation = -15.219583 kcal Electronic energy + Delta-G solvation = -20440.816941 eV Core-core repulsion = 17273.576442 eV Total energy + Delta-G solvation = -3167.240498 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.32517 -37.11180 -36.58506 -35.90100 -33.68619 -31.84670 -31.17533 -30.39262 -28.19636 -25.72579 -23.81952 -22.40647 -21.20317 -20.27576 -18.63234 -17.74968 -16.91564 -16.18645 -15.86536 -15.53198 -15.20658 -14.89532 -14.72815 -14.27312 -13.72085 -13.26656 -13.04091 -12.70125 -12.40002 -12.17730 -12.00862 -11.91392 -11.87000 -11.62821 -11.51204 -11.29395 -11.12984 -10.83482 -10.66237 -10.44634 -10.12006 -9.83257 -9.61762 -9.01069 -8.19439 -7.76796 -7.18550 -6.56708 -4.65596 0.16564 2.57476 2.76832 2.86516 3.03195 3.06687 3.10761 3.74654 3.85455 3.91049 4.27608 4.60984 4.67396 4.84974 5.01742 5.23162 5.32632 5.56804 5.73830 5.77871 5.86923 6.00487 6.22927 6.30160 6.46200 6.62802 6.66487 6.90575 7.03498 7.24851 7.47762 7.61251 7.63809 8.01806 8.17518 8.56031 8.82738 9.90243 10.16632 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.006098 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.417992 B = 4590.391364 C = 5736.722239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.427 4.427 8 H 0.085 0.915 9 C 0.275 3.725 10 C -0.290 4.290 11 C -0.043 4.043 12 C -0.323 4.323 13 C 0.324 3.676 14 N -0.495 5.495 15 C 0.069 3.931 16 C -0.594 4.594 17 S 2.404 3.596 18 O -0.954 6.954 19 O -0.942 6.942 20 C -0.589 4.589 21 C 0.075 3.925 22 N -0.509 5.509 23 H 0.273 0.727 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 -3.929 -0.117 6.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.154 4.154 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.458 4.458 8 H 0.103 0.897 9 C 0.149 3.851 10 C -0.313 4.313 11 C -0.067 4.067 12 C -0.348 4.348 13 C 0.087 3.913 14 N -0.214 5.214 15 C -0.059 4.059 16 C -0.724 4.724 17 S 2.588 3.412 18 O -0.952 6.952 19 O -0.939 6.939 20 C -0.721 4.721 21 C -0.053 4.053 22 N -0.227 5.227 23 H 0.084 0.916 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.099 -2.914 -0.182 7.676 hybrid contribution 1.632 -0.144 -0.071 1.640 sum -5.467 -3.058 -0.253 6.269 Atomic orbital electron populations 1.70051 1.07272 1.27754 1.28979 1.26039 0.94934 1.01121 0.93257 0.86253 0.80853 0.81020 0.78608 1.18422 1.19798 1.19817 1.19658 0.94372 0.89276 1.42516 0.89655 1.18313 0.87148 0.92071 0.87567 1.21675 0.98764 0.93406 1.17445 1.20713 0.93505 0.96697 0.95834 1.20666 0.94399 0.95678 1.24038 1.19509 0.86982 0.90818 0.94034 1.58395 1.07291 1.13851 1.41859 1.21843 0.90894 1.00865 0.92270 1.30196 1.08455 1.22025 1.11749 1.08345 0.76537 0.79085 0.77283 1.93555 1.35665 1.85371 1.80559 1.93584 1.87176 1.73512 1.39609 1.30231 1.10521 1.14237 1.17062 1.21711 0.89704 0.89148 1.04705 1.68566 1.08123 1.24558 1.21457 0.91614 0.88278 0.88388 0.88428 0.92104 0.87771 0.84172 0.84752 0.84588 0.84667 0.84612 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.39 10.88 55.55 0.60 -16.78 16 2 C 0.07 1.70 5.50 -17.35 -0.10 1.61 16 3 Si 0.91 17.66 29.56 -169.99 -5.02 12.64 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.43 -10.74 9.14 -37.74 -0.34 -11.08 16 8 H 0.09 2.03 7.85 -52.49 -0.41 1.62 16 9 C 0.27 7.07 6.55 -85.00 -0.56 6.51 16 10 C -0.29 -6.76 9.83 -38.65 -0.38 -7.14 16 11 C -0.04 -0.91 10.15 -39.39 -0.40 -1.31 16 12 C -0.32 -6.77 9.05 -38.87 -0.35 -7.12 16 13 C 0.32 7.22 6.43 -155.32 -1.00 6.22 16 14 N -0.49 -9.09 4.44 -173.64 -0.77 -9.86 16 15 C 0.07 1.05 5.26 -3.96 -0.02 1.03 16 16 C -0.59 -6.93 6.58 37.25 0.25 -6.68 16 17 S 2.40 32.75 5.34 -107.50 -0.57 32.18 16 18 O -0.95 -15.08 18.11 -57.81 -1.05 -16.13 16 19 O -0.94 -16.07 18.10 -57.81 -1.05 -17.12 16 20 C -0.59 -8.03 6.57 37.24 0.24 -7.78 16 21 C 0.08 1.37 4.80 -3.97 -0.02 1.35 16 22 N -0.51 -12.77 5.91 -10.33 -0.06 -12.84 16 23 H 0.27 5.98 8.29 -40.82 -0.34 5.65 16 24 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 25 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.10 1.80 7.08 -52.49 -0.37 1.43 16 27 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 28 H 0.10 1.50 6.25 -51.93 -0.32 1.18 16 29 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.14 1.62 8.14 -51.93 -0.42 1.19 16 32 H 0.14 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.14 2.86 6.57 -51.93 -0.34 2.51 16 34 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 LS Contribution 294.10 15.07 4.43 4.43 Total: -1.00 -31.13 294.10 -10.11 -41.24 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -3.94 Total: 6.64 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.68 Total: -24.40 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -0.23 Total: -39.48 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -2.09 Total: -33.25 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.02 Total: 12.64 kcal Atomic # 16 Polarization: 32.75 SS G_CDS: -0.57 Total: 32.18 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.13 -10.11 -41.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.023 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds