Wall clock time and date at job start Fri Apr 10 2020 14:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 119.99732 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99686 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99834 * 3 2 1 7 7 C 1.40023 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00266 * 179.97438 * 7 2 1 9 9 C 1.41315 * 119.99628 * 0.02562 * 7 2 1 10 10 C 1.40595 * 119.78180 * 179.97438 * 9 7 2 11 11 C 1.38354 * 119.14399 * 179.97438 * 10 9 7 12 12 C 1.38641 * 118.68349 * 359.97438 * 11 10 9 13 13 C 1.39757 * 119.48912 * 0.02562 * 12 11 10 14 14 N 1.38821 * 119.57864 * 180.02562 * 13 12 11 15 15 C 1.46473 * 111.00065 * 305.84742 * 14 13 12 16 16 C 1.53179 * 109.89898 * 163.00335 * 15 14 13 17 17 S 1.81822 * 108.67796 * 62.64228 * 16 15 14 18 18 O 1.42093 * 108.70011 * 193.42424 * 17 16 15 19 19 O 1.42100 * 108.82470 * 61.98326 * 17 16 15 20 20 C 1.81816 * 101.01603 * 307.68238 * 17 16 15 21 21 C 1.46477 * 110.99912 * 179.97438 * 14 13 12 22 22 N 1.31983 * 120.83136 * 359.73771 * 13 12 11 23 23 H 0.97005 * 120.00232 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.42841 * 359.95471 * 10 9 7 25 25 H 1.07997 * 120.65656 * 179.97438 * 11 10 9 26 26 H 1.07998 * 120.25018 * 179.97438 * 12 11 10 27 27 H 1.09001 * 109.40195 * 283.14042 * 15 14 13 28 28 H 1.09002 * 109.39497 * 42.87583 * 15 14 13 29 29 H 1.08994 * 109.60696 * 302.88286 * 16 15 14 30 30 H 1.09003 * 109.60004 * 182.39579 * 16 15 14 31 31 H 1.08997 * 109.60204 * 292.55257 * 20 17 16 32 32 H 1.09002 * 109.59822 * 172.07519 * 20 17 16 33 33 H 1.09004 * 109.39951 * 317.13057 * 21 14 13 34 34 H 1.09006 * 109.39935 * 76.85828 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3011 -2.4364 0.0005 10 6 2.0087 -3.6513 0.0005 11 6 1.3036 -4.8417 0.0011 12 6 -0.0820 -4.7944 0.0022 13 6 -0.7281 -3.5552 0.0021 14 7 -2.1154 -3.5057 0.0037 15 6 -2.6699 -4.2880 -1.1035 16 6 -4.1534 -4.5723 -0.8494 17 16 -5.0487 -2.9907 -0.7962 18 8 -6.3441 -3.2183 -0.2585 19 8 -4.9214 -2.3491 -2.0577 20 6 -4.0627 -2.0744 0.4261 21 6 -2.5912 -2.1203 0.0040 22 7 -0.0359 -2.4315 0.0063 23 1 -0.4851 0.8401 -0.0004 24 1 3.0886 -3.6553 -0.0002 25 1 1.8223 -5.7890 0.0007 26 1 -0.6576 -5.7083 0.0022 27 1 -2.5625 -3.7276 -2.0323 28 1 -2.1296 -5.2310 -1.1867 29 1 -4.2688 -5.0900 0.1028 30 1 -4.5505 -5.1903 -1.6548 31 1 -4.1761 -2.5355 1.4072 32 1 -4.3998 -1.0385 0.4653 33 1 -1.9953 -1.5330 0.7027 34 1 -2.4889 -1.7022 -0.9975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116662099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:03 Heat of formation + Delta-G solvation = -37.228154 kcal Electronic energy + Delta-G solvation = -20441.771304 eV Core-core repulsion = 17273.576442 eV Total energy + Delta-G solvation = -3168.194862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.90055 -38.55424 -37.91443 -37.11542 -35.42899 -33.12933 -32.64656 -32.05097 -29.74084 -27.43032 -25.13054 -23.87439 -22.88814 -21.79671 -19.78438 -19.44637 -18.34184 -17.37344 -17.23782 -16.76123 -16.65698 -16.47914 -16.28137 -15.77934 -15.16820 -14.84091 -14.33444 -14.13512 -13.77398 -13.54129 -13.33516 -13.20390 -13.11603 -12.99852 -12.87371 -12.74953 -12.73211 -12.61458 -12.28599 -11.77901 -11.66434 -11.31048 -11.05357 -10.63021 -9.94205 -9.51666 -8.85737 -8.31174 -6.50013 -0.93896 0.86453 1.17688 1.41829 1.52284 1.54955 1.68744 2.22398 2.55393 2.65910 2.85008 3.09587 3.49202 3.74799 3.88743 3.96669 4.09886 4.21718 4.34927 4.39344 4.54336 4.76529 4.83231 4.85302 4.93262 4.96874 5.04424 5.24741 5.33367 5.63815 5.84979 5.91194 5.94006 6.27904 6.41808 6.77650 7.02971 8.14425 8.43163 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.006098 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.417992 B = 4590.391364 C = 5736.722239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.030 3.970 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.464 4.464 8 H 0.085 0.915 9 C 0.242 3.758 10 C -0.316 4.316 11 C -0.041 4.041 12 C -0.319 4.319 13 C 0.306 3.694 14 N -0.488 5.488 15 C 0.061 3.939 16 C -0.572 4.572 17 S 2.422 3.578 18 O -0.972 6.972 19 O -0.980 6.980 20 C -0.585 4.585 21 C 0.080 3.920 22 N -0.535 5.535 23 H 0.278 0.722 24 H 0.105 0.895 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.049 0.951 28 H 0.120 0.880 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.103 0.897 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 -5.473 0.133 8.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.192 4.192 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.104 0.896 9 C 0.116 3.884 10 C -0.339 4.339 11 C -0.065 4.065 12 C -0.344 4.344 13 C 0.068 3.932 14 N -0.207 5.207 15 C -0.066 4.066 16 C -0.704 4.704 17 S 2.608 3.392 18 O -0.969 6.969 19 O -0.977 6.977 20 C -0.716 4.716 21 C -0.049 4.049 22 N -0.254 5.254 23 H 0.089 0.911 24 H 0.123 0.877 25 H 0.153 0.847 26 H 0.149 0.851 27 H 0.067 0.933 28 H 0.138 0.862 29 H 0.187 0.813 30 H 0.189 0.811 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.121 0.879 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.961 -4.459 0.068 9.125 hybrid contribution 1.849 0.175 -0.143 1.863 sum -6.111 -4.284 -0.075 7.464 Atomic orbital electron populations 1.70141 1.08466 1.28797 1.29414 1.26828 0.95773 1.04018 0.92594 0.85164 0.79451 0.76534 0.78605 1.18100 1.19474 1.19240 1.19941 0.94648 0.90397 1.44583 0.89644 1.18764 0.88004 0.93302 0.88371 1.21843 0.99321 0.93776 1.18917 1.21134 0.93855 0.97404 0.94109 1.21076 0.94736 0.96381 1.22162 1.20061 0.88736 0.90896 0.93502 1.58517 1.05329 1.13965 1.42875 1.22010 0.93190 1.00695 0.90753 1.30076 1.04983 1.20496 1.14884 1.07686 0.76037 0.79485 0.75949 1.93534 1.36939 1.85807 1.80635 1.93538 1.87678 1.75090 1.41438 1.30202 1.07111 1.15961 1.18323 1.21471 0.92025 0.88798 1.02559 1.68551 1.08174 1.26332 1.22338 0.91138 0.87675 0.84732 0.85119 0.93287 0.86237 0.81343 0.81148 0.82373 0.83312 0.87879 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -37.55 10.88 21.84 0.24 -37.31 16 2 C 0.03 1.48 5.50 85.29 0.47 1.94 16 3 Si 0.98 37.12 29.56 68.60 2.03 39.14 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 6 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.46 -24.31 9.14 23.46 0.21 -24.09 16 8 H 0.09 4.25 7.85 -2.91 -0.02 4.22 16 9 C 0.24 12.84 6.55 40.19 0.26 13.11 16 10 C -0.32 -14.87 9.83 22.87 0.22 -14.64 16 11 C -0.04 -1.65 10.15 22.39 0.23 -1.43 16 12 C -0.32 -12.72 9.05 22.73 0.21 -12.52 16 13 C 0.31 13.52 6.43 133.40 0.86 14.38 16 14 N -0.49 -17.39 4.44 -703.27 -3.12 -20.51 16 15 C 0.06 1.70 5.26 86.44 0.45 2.15 16 16 C -0.57 -11.11 6.58 72.04 0.47 -10.64 16 17 S 2.42 61.43 5.34 -56.49 -0.30 61.12 16 18 O -0.97 -28.46 18.11 -127.39 -2.31 -30.77 16 19 O -0.98 -32.87 18.10 -127.39 -2.31 -35.17 16 20 C -0.59 -15.32 6.57 72.03 0.47 -14.84 16 21 C 0.08 2.94 4.80 86.44 0.41 3.35 16 22 N -0.54 -27.64 5.91 -186.59 -1.10 -28.74 16 23 H 0.28 12.68 8.29 -92.70 -0.77 11.91 16 24 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 25 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 26 H 0.13 4.27 7.08 -2.91 -0.02 4.25 16 27 H 0.05 1.51 7.93 -2.39 -0.02 1.49 16 28 H 0.12 3.00 6.25 -2.39 -0.01 2.99 16 29 H 0.17 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.17 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.16 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.15 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.10 4.52 6.57 -2.39 -0.02 4.50 16 34 H 0.04 1.64 7.93 -2.38 -0.02 1.63 16 Total: -1.00 -69.66 294.10 -1.48 -71.14 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 1.12 Total: 24.33 kcal Atomic # 6 Polarization: -47.51 SS G_CDS: 4.28 Total: -43.23 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -3.99 Total: -86.57 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -4.61 Total: -65.94 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 16 Polarization: 61.43 SS G_CDS: -0.30 Total: 61.12 kcal Total: -69.66 -1.48 -71.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.916 kcal (2) G-P(sol) polarization free energy of solvation -69.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds