Wall clock time and date at job start Fri Apr 10 2020 14:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86802 * 120.00334 * 2 1 4 4 H 1.48493 * 109.47233 * 275.41130 * 3 2 1 5 5 H 1.48507 * 109.46734 * 35.40884 * 3 2 1 6 6 H 1.48502 * 109.46992 * 155.40432 * 3 2 1 7 7 C 1.39872 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99713 * 342.06979 * 7 2 1 9 9 C 1.41203 * 120.00478 * 161.79829 * 7 2 1 10 10 C 1.41324 * 120.56724 * 330.20774 * 9 7 2 11 11 C 1.36559 * 118.40612 * 179.77387 * 10 9 7 12 12 C 1.39706 * 119.49648 * 0.49942 * 11 10 9 13 13 N 1.38366 * 119.43250 * 179.75995 * 12 11 10 14 14 C 1.46499 * 120.00291 * 359.97438 * 13 12 11 15 15 H 1.09004 * 110.01357 * 34.29591 * 14 13 12 16 16 C 1.53871 * 110.03078 * 155.67595 * 14 13 12 17 17 C 1.54169 * 108.70411 * 166.47073 * 16 14 13 18 18 S 1.82914 * 105.08509 * 332.09211 * 17 16 14 19 19 O 1.42101 * 109.35119 * 115.52510 * 18 17 16 20 20 O 1.42102 * 109.35498 * 248.59036 * 18 17 16 21 21 C 1.55054 * 110.02535 * 272.91943 * 14 13 12 22 22 N 1.32750 * 121.13360 * 359.73845 * 12 11 10 23 23 C 1.31474 * 121.73101 * 0.02562 * 22 12 11 24 24 H 0.96998 * 119.99895 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.79757 * 0.02562 * 10 9 7 26 26 H 1.08005 * 120.24949 * 180.21922 * 11 10 9 27 27 H 0.97000 * 120.00131 * 179.97438 * 13 12 11 28 28 H 1.09004 * 109.64918 * 286.32237 * 16 14 13 29 29 H 1.08997 * 109.64635 * 46.62062 * 16 14 13 30 30 H 1.08997 * 110.31979 * 90.99756 * 17 16 14 31 31 H 1.09005 * 110.31682 * 213.08943 * 17 16 14 32 32 H 1.08997 * 110.78937 * 316.53995 * 21 14 13 33 33 H 1.08997 * 110.78998 * 80.00650 * 21 14 13 34 34 H 1.08002 * 119.81618 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3763 2.1124 -1.3938 5 1 1.5023 2.6170 0.8113 6 1 3.5931 1.4097 0.5827 7 6 2.0084 -1.2113 -0.0005 8 1 1.5077 -2.1240 0.2870 9 6 3.3674 -1.2419 -0.3825 10 6 3.8728 -0.3087 -1.3158 11 6 5.1951 -0.3754 -1.6501 12 6 6.0013 -1.3605 -1.0746 13 7 7.3399 -1.4300 -1.4181 14 6 7.9003 -0.4760 -2.3782 15 1 7.4144 0.4935 -2.2677 16 6 9.4163 -0.3339 -2.1563 17 6 10.0276 0.3933 -3.3705 18 16 8.9253 -0.0122 -4.7728 19 8 8.3008 1.1758 -5.2396 20 8 9.6152 -0.8548 -5.6857 21 6 7.7100 -1.0036 -3.8237 22 7 5.5054 -2.2308 -0.2034 23 6 4.2406 -2.2061 0.1550 24 1 -0.4850 0.8400 0.0004 25 1 3.2296 0.4418 -1.7511 26 1 5.6135 0.3253 -2.3576 27 1 7.9073 -2.1105 -1.0231 28 1 9.6016 0.2447 -1.2512 29 1 9.8661 -1.3216 -2.0561 30 1 10.0420 1.4697 -3.1993 31 1 11.0365 0.0277 -3.5621 32 1 7.9476 -2.0657 -3.8823 33 1 6.6958 -0.8129 -4.1748 34 1 3.8699 -2.9289 0.8667 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162490012.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:50 Heat of formation + Delta-G solvation = -57.892013 kcal Electronic energy + Delta-G solvation = -19687.276775 eV Core-core repulsion = 16518.185861 eV Total energy + Delta-G solvation = -3169.090914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75679 -38.46200 -38.05676 -37.04877 -35.84308 -34.21187 -33.09115 -31.19404 -30.17206 -26.97537 -25.37659 -24.34790 -22.99220 -21.72914 -19.79583 -19.41536 -18.73098 -17.93029 -17.48165 -16.96680 -16.88486 -16.56371 -15.77091 -15.43715 -15.33224 -14.88651 -14.81988 -14.53931 -14.40320 -13.85006 -13.51433 -13.48595 -13.23130 -13.17812 -13.09616 -12.78124 -12.64570 -12.23499 -11.94089 -11.84450 -11.76856 -11.44712 -11.28300 -10.63489 -10.33728 -10.04184 -8.84287 -8.66386 -6.30035 -0.90917 0.62846 0.84074 1.25747 1.38238 1.47427 1.60644 2.11512 2.41714 2.64435 2.72268 3.08948 3.46047 3.55926 3.65615 3.76471 3.90748 4.04351 4.10705 4.29434 4.52688 4.52915 4.67487 4.74296 4.88097 4.96472 5.06702 5.09003 5.23276 5.36478 5.67926 5.77209 6.25817 6.44268 6.53330 6.81446 6.98391 7.64839 8.24802 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.027328 B = 0.004445 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.358194 B = 6297.557386 C = 6758.823990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.047 3.953 3 Si 0.957 3.043 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.477 4.477 8 H 0.059 0.941 9 C -0.010 4.010 10 C -0.169 4.169 11 C -0.191 4.191 12 C 0.294 3.706 13 N -0.711 5.711 14 C 0.155 3.845 15 H 0.101 0.899 16 C -0.117 4.117 17 C -0.557 4.557 18 S 2.398 3.602 19 O -0.979 6.979 20 O -0.978 6.978 21 C -0.610 4.610 22 N -0.522 5.522 23 C 0.032 3.968 24 H 0.291 0.709 25 H 0.110 0.890 26 H 0.138 0.862 27 H 0.407 0.593 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.160 0.840 31 H 0.169 0.831 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.595 3.355 -4.691 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.167 4.167 3 Si 0.781 3.219 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.509 4.509 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.195 4.195 11 C -0.215 4.215 12 C 0.061 3.939 13 N -0.349 5.349 14 C 0.046 3.954 15 H 0.118 0.882 16 C -0.156 4.156 17 C -0.690 4.690 18 S 2.585 3.415 19 O -0.976 6.976 20 O -0.975 6.975 21 C -0.742 4.742 22 N -0.237 5.237 23 C -0.127 4.127 24 H 0.102 0.898 25 H 0.127 0.873 26 H 0.156 0.844 27 H 0.244 0.756 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.178 0.822 31 H 0.187 0.813 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 20.896 3.187 -5.430 21.825 hybrid contribution -1.191 0.494 0.550 1.402 sum 19.705 3.682 -4.880 20.632 Atomic orbital electron populations 1.69755 1.09040 1.31136 1.38443 1.26705 0.95257 1.03842 0.90861 0.85614 0.79604 0.77184 0.79513 1.18171 1.20380 1.17914 1.19188 0.94006 0.95613 1.42057 0.92257 1.18558 0.94232 0.95052 0.93710 1.21202 0.96194 1.02202 0.99925 1.21078 0.94057 1.01488 1.04895 1.18070 0.86817 0.93366 0.95654 1.43483 1.05175 1.37370 1.48902 1.21625 0.95604 0.93554 0.84609 0.88166 1.22152 0.90389 1.04111 0.98955 1.30268 1.14658 1.12226 1.11853 1.08562 0.78670 0.75458 0.78760 1.93577 1.76481 1.47013 1.80578 1.93560 1.73114 1.68679 1.62134 1.31260 1.16920 1.15623 1.10364 1.66701 1.15892 1.25646 1.15482 1.22457 0.87369 1.01463 1.01411 0.89843 0.87263 0.84390 0.75644 0.86568 0.87080 0.82186 0.81297 0.83130 0.85222 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.75 13.93 21.82 0.30 -46.44 16 2 C 0.05 2.47 5.42 85.23 0.46 2.93 16 3 Si 0.96 41.63 24.53 68.60 1.68 43.31 16 4 H -0.26 -10.46 6.70 99.48 0.67 -9.79 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.26 -11.27 6.86 99.48 0.68 -10.58 16 7 C -0.48 -26.22 9.58 23.39 0.22 -26.00 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 9 C -0.01 -0.50 5.11 -21.18 -0.11 -0.61 16 10 C -0.17 -7.63 7.23 22.64 0.16 -7.47 16 11 C -0.19 -7.29 9.15 22.23 0.20 -7.08 16 12 C 0.29 10.71 7.64 133.31 1.02 11.73 16 13 N -0.71 -17.60 5.28 -319.61 -1.69 -19.29 16 14 C 0.16 2.67 2.54 45.99 0.12 2.79 16 15 H 0.10 1.78 6.41 -2.38 -0.02 1.76 16 16 C -0.12 -0.98 5.92 31.28 0.19 -0.79 16 17 C -0.56 -3.65 7.26 72.38 0.53 -3.12 16 18 S 2.40 38.75 6.10 -56.49 -0.34 38.40 16 19 O -0.98 -24.22 18.14 -127.47 -2.31 -26.53 16 20 O -0.98 -22.79 18.15 -127.47 -2.31 -25.10 16 21 C -0.61 -10.46 6.96 72.69 0.51 -9.95 16 22 N -0.52 -21.77 10.37 -191.21 -1.98 -23.75 16 23 C 0.03 1.48 10.97 85.36 0.94 2.41 16 24 H 0.29 14.33 8.30 -92.71 -0.77 13.57 16 25 H 0.11 4.91 4.80 -2.91 -0.01 4.89 16 26 H 0.14 4.26 6.17 -2.91 -0.02 4.24 16 27 H 0.41 8.67 8.71 -92.71 -0.81 7.86 16 28 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.11 0.56 8.10 -2.39 -0.02 0.54 16 30 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.17 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.14 6.19 8.06 -2.91 -0.02 6.17 16 Total: -1.00 -74.58 294.27 -2.15 -76.73 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.27 Total: 17.83 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 4.23 Total: -35.17 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -3.37 Total: -89.48 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -4.63 Total: -51.63 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.68 Total: 43.31 kcal Atomic # 16 Polarization: 38.75 SS G_CDS: -0.34 Total: 38.40 kcal Total: -74.58 -2.15 -76.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162490012.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.838 kcal (2) G-P(sol) polarization free energy of solvation -74.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds