Wall clock time and date at job start Fri Apr 10 2020 15:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00369 * 2 1 4 4 H 1.48508 * 109.47313 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47310 * 300.00363 * 3 2 1 6 6 H 1.48503 * 109.47291 * 60.00362 * 3 2 1 7 7 C 1.37875 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00377 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99936 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40208 * 66.45943 * 9 7 2 11 11 O 1.42099 * 106.40166 * 293.54029 * 9 7 2 12 12 N 1.65604 * 107.21864 * 180.02562 * 9 7 2 13 13 C 1.39000 * 120.00254 * 64.99766 * 12 9 7 14 14 C 1.39141 * 119.70434 * 359.97438 * 13 12 9 15 15 C 1.38296 * 119.09763 * 179.76832 * 14 13 12 16 16 C 1.38889 * 118.50402 * 0.49062 * 15 14 13 17 17 C 1.38019 * 119.33038 * 359.50767 * 16 15 14 18 18 C 1.50691 * 119.57526 * 180.23088 * 17 16 15 19 19 C 1.53777 * 113.61650 * 61.63448 * 18 17 16 20 20 C 1.53954 * 87.02245 * 220.05319 * 19 18 17 21 21 C 1.53778 * 87.11267 * 25.36361 * 20 19 18 22 22 N 1.31980 * 120.85553 * 0.25058 * 17 16 15 23 23 H 0.97004 * 119.99717 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99906 * 245.00297 * 12 9 7 25 25 H 1.08002 * 120.45418 * 0.03986 * 14 13 12 26 26 H 1.08002 * 120.74846 * 180.24664 * 15 14 13 27 27 H 1.07998 * 120.33227 * 179.77802 * 16 15 14 28 28 H 1.09000 * 112.85684 * 192.83375 * 18 17 16 29 29 H 1.09011 * 113.61580 * 334.57103 * 19 18 17 30 30 H 1.09000 * 113.61575 * 105.47018 * 19 18 17 31 31 H 1.09005 * 113.53504 * 270.80899 * 20 19 18 32 32 H 1.09002 * 113.74547 * 139.94484 * 20 19 18 33 33 H 1.09000 * 113.61404 * 220.09590 * 21 20 19 34 34 H 1.08997 * 113.61508 * 89.18633 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4507 -2.7950 -1.2500 11 8 0.4517 -2.7955 1.2494 12 7 2.2481 -3.9355 -0.0005 13 6 3.0936 -4.1001 1.0904 14 6 2.9899 -3.2398 2.1790 15 6 3.8342 -3.4180 3.2598 16 6 4.7644 -4.4482 3.2114 17 6 4.8122 -5.2643 2.0994 18 6 5.8158 -6.3869 2.0433 19 6 5.6282 -7.4369 3.1510 20 6 7.1631 -7.4748 3.2642 21 6 7.1621 -6.0432 2.7026 22 7 3.9905 -5.0739 1.0843 23 1 -0.4850 0.8401 0.0004 24 1 2.3169 -4.5326 -0.7619 25 1 2.2572 -2.4463 2.1819 26 1 3.7742 -2.7682 4.1204 27 1 5.4406 -4.6117 4.0375 28 1 5.9150 -6.8168 1.0466 29 1 5.1342 -7.0485 4.0418 30 1 5.1923 -8.3714 2.7976 31 1 7.6306 -8.2034 2.6017 32 1 7.5261 -7.5412 4.2898 33 1 7.9627 -5.8541 1.9875 34 1 7.0882 -5.2730 3.4703 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192943658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:12 Heat of formation + Delta-G solvation = -62.249555 kcal Electronic energy + Delta-G solvation = -19906.292402 eV Core-core repulsion = 16737.012532 eV Total energy + Delta-G solvation = -3169.279871 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 4.54 seconds Orbital eigenvalues (eV) -41.58472 -39.34042 -37.68363 -36.41896 -36.05114 -35.24688 -33.43345 -30.70792 -28.42415 -26.85289 -26.42546 -24.17112 -23.43083 -21.10432 -20.37174 -19.55615 -18.94785 -18.35981 -17.51133 -17.06145 -16.48104 -16.26258 -16.10249 -15.84284 -15.45234 -15.38449 -14.27258 -14.08446 -13.65015 -13.53689 -13.29722 -13.23742 -13.13157 -13.04950 -12.82025 -12.72010 -12.34063 -12.27108 -12.16517 -11.72674 -11.30708 -11.26583 -11.17337 -11.03778 -10.65342 -10.48179 -9.24901 -8.82967 -7.58575 -0.05671 0.20993 0.39579 1.32403 1.33615 1.52119 2.14774 2.47434 2.53269 2.77397 3.27405 3.52576 3.71397 3.74906 3.90559 4.03106 4.09596 4.14110 4.20823 4.25559 4.48892 4.75928 4.83577 4.90265 4.94653 4.98686 5.08588 5.16543 5.19641 5.21250 5.32496 5.39108 5.65098 5.71881 5.80488 6.05941 6.68902 7.01373 8.14105 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.004922 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.384385 B = 5686.811045 C = 6211.480913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.994 3.006 4 H -0.251 1.251 5 H -0.258 1.258 6 H -0.253 1.253 7 C -1.027 5.027 8 H 0.118 0.882 9 S 2.712 3.288 10 O -1.026 7.026 11 O -1.016 7.016 12 N -1.042 6.042 13 C 0.373 3.627 14 C -0.252 4.252 15 C -0.033 4.033 16 C -0.200 4.200 17 C 0.158 3.842 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.127 4.127 22 N -0.540 5.540 23 H 0.303 0.697 24 H 0.425 0.575 25 H 0.137 0.863 26 H 0.170 0.830 27 H 0.175 0.825 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.545 -8.455 8.723 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.137 4.137 3 Si 0.812 3.188 4 H -0.174 1.174 5 H -0.183 1.183 6 H -0.177 1.177 7 C -1.162 5.162 8 H 0.136 0.864 9 S 2.814 3.186 10 O -1.016 7.016 11 O -1.006 7.006 12 N -0.786 5.786 13 C 0.141 3.859 14 C -0.276 4.276 15 C -0.059 4.059 16 C -0.221 4.221 17 C 0.020 3.980 18 C -0.093 4.093 19 C -0.166 4.166 20 C -0.164 4.164 21 C -0.165 4.165 22 N -0.257 5.257 23 H 0.113 0.887 24 H 0.260 0.740 25 H 0.155 0.845 26 H 0.187 0.813 27 H 0.192 0.808 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.343 -8.980 8.051 18.740 hybrid contribution -0.084 1.323 -0.340 1.368 sum 14.259 -7.657 7.711 17.928 Atomic orbital electron populations 1.69967 1.08641 1.32716 1.40459 1.25969 0.95398 1.05063 0.87302 0.85043 0.79266 0.74798 0.79734 1.17410 1.18260 1.17672 1.30607 1.06852 1.11059 1.67652 0.86375 1.00552 0.72160 0.73878 0.72044 1.93349 1.73767 1.87943 1.46553 1.93347 1.73808 1.87603 1.45845 1.53804 1.50625 1.49067 1.25107 1.18091 0.89455 0.91666 0.86722 1.22289 1.05841 1.03394 0.96068 1.21732 0.91102 0.96333 0.96744 1.22058 1.02066 0.97120 1.00825 1.21488 0.92662 0.95487 0.88402 1.21705 0.93543 0.93217 1.00853 1.23049 0.98187 0.97845 0.97526 1.22795 0.94713 0.96339 1.02549 1.23106 0.94528 0.98586 1.00283 1.67020 1.07176 1.20320 1.31168 0.88658 0.73971 0.84488 0.81267 0.80768 0.88569 0.89353 0.91251 0.89364 0.89451 0.90703 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.16 13.19 21.45 0.28 -50.88 16 2 C 0.08 4.15 5.46 84.65 0.46 4.61 16 3 Si 0.99 40.12 29.54 68.60 2.03 42.15 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 7 C -1.03 -55.90 8.33 67.73 0.56 -55.34 16 8 H 0.12 5.97 7.81 -2.91 -0.02 5.95 16 9 S 2.71 148.30 4.56 -56.49 -0.26 148.04 16 10 O -1.03 -61.73 18.02 -128.00 -2.31 -64.04 16 11 O -1.02 -59.75 15.60 -128.00 -2.00 -61.74 16 12 N -1.04 -47.04 5.87 -55.43 -0.33 -47.37 16 13 C 0.37 15.90 7.57 133.07 1.01 16.91 16 14 C -0.25 -10.41 8.46 22.50 0.19 -10.22 16 15 C -0.03 -1.02 10.17 22.44 0.23 -0.79 16 16 C -0.20 -5.07 8.69 22.37 0.19 -4.87 16 17 C 0.16 4.64 6.19 42.48 0.26 4.91 16 18 C -0.07 -1.57 4.15 -11.01 -0.05 -1.62 16 19 C -0.13 -2.10 7.56 31.18 0.24 -1.86 16 20 C -0.13 -1.49 8.09 31.18 0.25 -1.24 16 21 C -0.13 -1.88 7.45 31.12 0.23 -1.65 16 22 N -0.54 -20.28 10.31 -181.35 -1.87 -22.15 16 23 H 0.30 15.53 8.31 -92.71 -0.77 14.76 16 24 H 0.43 17.05 8.95 -96.74 -0.87 16.18 16 25 H 0.14 6.49 4.74 -2.91 -0.01 6.48 16 26 H 0.17 3.88 8.06 -2.91 -0.02 3.85 16 27 H 0.18 2.82 6.54 -2.91 -0.02 2.81 16 28 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.09 1.40 7.76 -2.38 -0.02 1.38 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.25 6.21 -2.39 -0.01 1.24 16 Total: -1.00 -74.77 299.61 -0.59 -75.36 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.27 Total: 31.81 kcal Atomic # 6 Polarization: -54.75 SS G_CDS: 3.58 Total: -51.17 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -1.91 Total: -120.40 kcal Atomic # 8 Polarization: -121.48 SS G_CDS: -4.30 Total: -125.78 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 16 Polarization: 148.30 SS G_CDS: -0.26 Total: 148.04 kcal Total: -74.77 -0.59 -75.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.110 kcal (2) G-P(sol) polarization free energy of solvation -74.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.54 seconds