Wall clock time and date at job start Fri Apr 10 2020 14:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48500 * 109.47344 * 239.99929 * 3 2 1 5 5 H 1.48504 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46987 * 120.00314 * 3 2 1 7 7 C 1.37870 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99977 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00297 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40217 * 66.45971 * 9 7 2 11 11 O 1.42105 * 106.40258 * 293.54053 * 9 7 2 12 12 N 1.65596 * 107.21889 * 180.02562 * 9 7 2 13 13 C 1.47425 * 125.64990 * 269.95317 * 12 9 7 14 14 C 1.54914 * 104.83074 * 155.90999 * 13 12 9 15 15 C 1.55157 * 101.58123 * 37.01304 * 14 13 12 16 16 C 1.47021 * 125.64813 * 90.00203 * 12 9 7 17 17 H 1.08997 * 109.88515 * 300.59068 * 16 12 9 18 18 C 1.50703 * 109.88451 * 61.60303 * 16 12 9 19 19 C 1.38220 * 119.62033 * 204.97516 * 18 16 12 20 20 C 1.38627 * 119.16050 * 180.02562 * 19 18 16 21 21 C 1.38678 * 118.42399 * 0.02562 * 20 19 18 22 22 C 1.38176 * 119.15893 * 0.02562 * 21 20 19 23 23 N 1.31860 * 119.61682 * 25.00129 * 18 16 12 24 24 H 0.97000 * 120.00152 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.37087 * 274.75003 * 13 12 9 26 26 H 1.09008 * 110.36338 * 37.07578 * 13 12 9 27 27 H 1.09002 * 111.00224 * 155.08720 * 14 13 12 28 28 H 1.08997 * 111.00268 * 278.93740 * 14 13 12 29 29 H 1.08998 * 110.71563 * 206.13455 * 15 14 13 30 30 H 1.09002 * 110.71694 * 82.86053 * 15 14 13 31 31 H 1.08000 * 120.42111 * 0.02562 * 19 18 16 32 32 H 1.08007 * 120.78745 * 180.02562 * 20 19 18 33 33 H 1.07995 * 120.42098 * 179.97438 * 21 20 19 34 34 H 1.07995 * 119.61795 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4518 -2.7956 1.2495 12 7 2.2483 -3.9353 -0.0005 13 6 2.8312 -4.5666 -1.1985 14 6 4.1916 -5.1361 -0.7244 15 6 3.8442 -5.6211 0.7079 16 6 2.8303 -4.5642 1.1942 17 1 3.3367 -3.8124 1.7995 18 6 1.7462 -5.2283 2.0035 19 6 1.9274 -5.4211 3.3601 20 6 0.9242 -6.0335 4.0952 21 6 -0.2288 -6.4313 3.4353 22 6 -0.3384 -6.2061 2.0764 23 7 0.6360 -5.6191 1.4090 24 1 -0.4850 0.8400 0.0004 25 1 2.1871 -5.3703 -1.5553 26 1 2.9830 -3.8245 -1.9825 27 1 4.5070 -5.9688 -1.3532 28 1 4.9537 -4.3572 -0.6991 29 1 4.7320 -5.6234 1.3401 30 1 3.3868 -6.6101 0.6797 31 1 2.8390 -5.0989 3.8413 32 1 1.0379 -6.1969 5.1568 33 1 -1.0305 -6.9116 3.9764 34 1 -1.2332 -6.5125 1.5551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:43 Heat of formation + Delta-G solvation = -79.089972 kcal Electronic energy + Delta-G solvation = -20807.377118 eV Core-core repulsion = 17637.366992 eV Total energy + Delta-G solvation = -3170.010126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.19994 -38.93684 -37.33337 -36.04677 -35.20681 -33.27375 -32.84531 -31.56780 -29.10014 -28.28301 -24.58204 -24.24441 -22.60286 -21.87561 -20.68780 -19.24631 -18.30033 -17.88285 -17.16163 -16.83666 -16.55867 -16.32066 -15.86588 -15.55523 -15.00860 -14.54596 -14.28297 -14.09032 -13.99624 -13.84486 -13.35055 -13.32847 -13.01636 -12.88048 -12.43919 -12.39354 -12.33754 -12.20086 -12.11847 -11.94056 -11.54783 -11.26538 -10.96824 -10.69127 -10.28872 -9.87870 -9.60602 -8.76075 -7.52462 0.25653 0.36795 0.53125 1.29874 1.33051 1.46181 2.18747 2.54550 2.87297 3.01648 3.38344 3.74254 3.81717 3.90192 3.94278 4.10018 4.24478 4.31309 4.38634 4.44060 4.53853 4.68412 4.76972 4.86836 4.93615 5.00096 5.09823 5.11068 5.15738 5.24709 5.32942 5.39968 5.52602 5.88037 5.89065 5.94018 6.73915 7.25607 8.18290 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.007253 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.929398 B = 3859.369738 C = 4396.800011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.067 3.933 3 Si 0.991 3.009 4 H -0.248 1.248 5 H -0.262 1.262 6 H -0.246 1.246 7 C -1.049 5.049 8 H 0.119 0.881 9 S 2.740 3.260 10 O -1.052 7.052 11 O -1.028 7.028 12 N -1.005 6.005 13 C 0.111 3.889 14 C -0.114 4.114 15 C -0.101 4.101 16 C 0.187 3.813 17 H 0.092 0.908 18 C 0.104 3.896 19 C -0.173 4.173 20 C -0.075 4.075 21 C -0.178 4.178 22 C 0.072 3.928 23 N -0.511 5.511 24 H 0.298 0.702 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.078 -11.749 6.633 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.146 4.146 3 Si 0.808 3.192 4 H -0.171 1.171 5 H -0.186 1.186 6 H -0.170 1.170 7 C -1.182 5.182 8 H 0.137 0.863 9 S 2.843 3.157 10 O -1.043 7.043 11 O -1.019 7.019 12 N -0.842 5.842 13 C -0.014 4.014 14 C -0.152 4.152 15 C -0.140 4.140 16 C 0.079 3.921 17 H 0.110 0.890 18 C -0.036 4.036 19 C -0.193 4.193 20 C -0.101 4.101 21 C -0.198 4.198 22 C -0.085 4.085 23 N -0.221 5.221 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.092 0.908 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.182 0.818 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.771 -11.617 5.712 15.637 hybrid contribution -0.053 1.162 0.563 1.292 sum 8.718 -10.455 6.275 14.990 Atomic orbital electron populations 1.70011 1.08959 1.32359 1.41517 1.26119 0.95411 1.05572 0.87451 0.85162 0.78845 0.74161 0.81002 1.17135 1.18607 1.16970 1.31111 1.07230 1.13073 1.66793 0.86314 0.99351 0.72157 0.72881 0.71359 1.93260 1.74555 1.88557 1.47880 1.93273 1.74029 1.88117 1.46431 1.58478 1.61304 1.51919 1.12505 1.22088 0.95549 0.96731 0.87021 1.22802 0.94644 1.01882 0.95898 1.22637 0.97600 0.96405 0.97371 1.20534 0.90977 0.94980 0.85580 0.89005 1.21877 0.93401 0.95040 0.93233 1.22181 1.02371 1.01087 0.93669 1.21977 0.92217 0.94234 1.01679 1.22408 1.00114 1.02128 0.95141 1.23056 0.97006 0.94894 0.93560 1.67233 1.01841 1.10224 1.42764 0.89156 0.92957 0.91934 0.87190 0.89185 0.86323 0.90831 0.82038 0.81067 0.81824 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.33 13.19 21.44 0.28 -56.05 16 2 C 0.07 3.89 5.46 84.65 0.46 4.36 16 3 Si 0.99 42.58 29.54 68.60 2.03 44.60 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 7 C -1.05 -61.32 9.74 67.73 0.66 -60.66 16 8 H 0.12 6.21 7.81 -2.91 -0.02 6.19 16 9 S 2.74 161.25 5.00 -56.49 -0.28 160.97 16 10 O -1.05 -69.56 17.61 -128.00 -2.25 -71.82 16 11 O -1.03 -65.26 15.78 -128.00 -2.02 -67.28 16 12 N -1.01 -44.63 3.00 -488.10 -1.46 -46.10 16 13 C 0.11 4.02 6.98 86.86 0.61 4.63 16 14 C -0.11 -2.65 7.09 31.99 0.23 -2.42 16 15 C -0.10 -2.38 6.47 31.78 0.21 -2.17 16 16 C 0.19 6.59 3.32 44.60 0.15 6.74 16 17 H 0.09 3.05 8.11 -2.39 -0.02 3.03 16 18 C 0.10 3.88 4.50 42.55 0.19 4.07 16 19 C -0.17 -5.06 9.77 22.36 0.22 -4.84 16 20 C -0.08 -1.89 10.18 22.47 0.23 -1.66 16 21 C -0.18 -4.84 10.11 22.36 0.23 -4.61 16 22 C 0.07 2.53 11.18 84.67 0.95 3.47 16 23 N -0.51 -21.60 8.86 -183.89 -1.63 -23.23 16 24 H 0.30 16.80 8.31 -92.71 -0.77 16.03 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 26 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 27 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.74 7.84 -2.39 -0.02 1.72 16 31 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.16 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -89.18 304.10 -0.12 -89.30 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 1.10 Total: 22.71 kcal Atomic # 6 Polarization: -57.23 SS G_CDS: 4.12 Total: -53.11 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -2.81 Total: -125.38 kcal Atomic # 8 Polarization: -134.83 SS G_CDS: -4.27 Total: -139.10 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 161.25 SS G_CDS: -0.28 Total: 160.97 kcal Total: -89.18 -0.12 -89.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.211 kcal (2) G-P(sol) polarization free energy of solvation -89.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds