Wall clock time and date at job start Fri Apr 10 2020 14:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99877 * 2 1 4 4 H 1.48492 * 109.47145 * 270.00213 * 3 2 1 5 5 H 1.48506 * 109.46910 * 30.00136 * 3 2 1 6 6 H 1.48496 * 109.46931 * 149.99620 * 3 2 1 7 7 C 1.37877 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00292 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47344 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47274 * 179.97438 * 10 9 7 12 12 O 1.42097 * 109.46799 * 296.38765 * 11 10 9 13 13 C 1.81403 * 102.99716 * 180.02562 * 11 10 9 14 14 C 1.50705 * 109.46948 * 180.02562 * 13 11 10 15 15 C 1.38603 * 119.54936 * 89.99775 * 14 13 11 16 16 C 1.38587 * 119.34759 * 180.02562 * 15 14 13 17 17 C 1.38630 * 118.48820 * 0.28013 * 16 15 14 18 18 C 1.39264 * 119.06364 * 359.45280 * 17 16 15 19 19 C 1.48165 * 119.72722 * 180.25557 * 18 17 16 20 20 N 1.34780 * 120.00496 * 180.30043 * 19 18 17 21 21 O 1.21512 * 119.99779 * 0.29946 * 19 18 17 22 22 N 1.31492 * 119.54686 * 270.02303 * 14 13 11 23 23 H 0.96995 * 120.00360 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47087 * 59.99851 * 9 7 2 25 25 H 1.08999 * 109.46807 * 299.99580 * 9 7 2 26 26 H 1.09001 * 109.46769 * 59.99503 * 10 9 7 27 27 H 1.08994 * 109.47011 * 300.00164 * 10 9 7 28 28 H 1.08996 * 109.47452 * 60.00005 * 13 11 10 29 29 H 1.09002 * 109.47018 * 299.99973 * 13 11 10 30 30 H 1.08000 * 120.32317 * 0.04559 * 15 14 13 31 31 H 1.08002 * 120.75096 * 179.97438 * 16 15 14 32 32 H 1.08001 * 120.46727 * 179.72671 * 17 16 15 33 33 H 0.97001 * 119.99585 * 359.97438 * 20 19 18 34 34 H 0.96996 * 120.00310 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3385 -5.2331 0.0013 12 8 0.5864 -5.3452 1.2017 13 6 2.6652 -6.4701 0.0020 14 6 2.0637 -7.8519 0.0020 15 6 1.7912 -8.4789 -1.2037 16 6 1.2375 -9.7493 -1.1988 17 6 0.9690 -10.3488 0.0220 18 6 1.2739 -9.6622 1.1946 19 6 0.9983 -10.2914 2.5074 20 7 1.2856 -9.6294 3.6457 21 8 0.5132 -11.4044 2.5577 22 7 1.8040 -8.4461 1.1460 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8905 27 1 2.8720 -3.6043 -0.8894 28 1 3.2814 -6.3417 0.8919 29 1 3.2814 -6.3425 -0.8880 30 1 2.0086 -7.9823 -2.1378 31 1 1.0157 -10.2586 -2.1250 32 1 0.5335 -11.3363 0.0631 33 1 1.6732 -8.7411 3.6055 34 1 1.1048 -10.0413 4.5051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320399712.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:25 Heat of formation + Delta-G solvation = -51.625071 kcal Electronic energy + Delta-G solvation = -18710.289377 eV Core-core repulsion = 15541.470218 eV Total energy + Delta-G solvation = -3168.819159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79584 -38.95974 -35.20793 -34.03548 -33.71964 -33.21814 -32.36733 -30.93193 -28.09681 -25.34946 -25.05642 -22.65652 -21.33284 -20.87360 -18.22892 -17.38627 -17.12325 -16.59154 -16.43290 -15.86090 -15.40263 -15.02701 -14.78917 -14.55487 -14.30281 -14.06491 -13.67773 -13.42218 -13.10606 -12.79956 -12.38224 -12.17946 -11.71364 -11.33587 -11.00846 -10.77871 -10.66149 -10.30673 -10.18843 -10.13884 -9.88108 -9.77087 -9.65474 -9.38488 -8.83733 -8.45138 -7.77277 -6.08024 -4.12559 0.41802 0.90429 1.92071 2.57786 3.06647 3.19929 3.26745 3.33643 3.36560 3.69568 3.88110 4.14377 4.39454 4.49726 4.62318 4.77209 4.81872 5.16753 5.22859 5.27084 5.34015 5.73044 5.76521 5.85608 5.89564 6.07930 6.33096 6.55158 6.74820 7.09446 7.44559 7.56153 7.59698 7.86806 8.03529 8.27596 8.92199 9.51892 11.02548 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.034679 B = 0.003224 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.214650 B = 8682.081836 C = 9080.745386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.416 4.416 11 S 1.229 4.771 12 O -0.834 6.834 13 C -0.417 4.417 14 C 0.159 3.841 15 C -0.144 4.144 16 C -0.077 4.077 17 C -0.120 4.120 18 C 0.078 3.922 19 C 0.580 3.420 20 N -0.833 5.833 21 O -0.542 6.542 22 N -0.454 5.454 23 H 0.263 0.737 24 H 0.028 0.972 25 H 0.023 0.977 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.132 0.868 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.415 0.585 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.767 -18.764 -4.727 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.556 4.556 11 S 1.428 4.572 12 O -0.829 6.829 13 C -0.549 4.549 14 C 0.018 3.982 15 C -0.165 4.165 16 C -0.103 4.103 17 C -0.142 4.142 18 C -0.061 4.061 19 C 0.364 3.636 20 N -0.396 5.396 21 O -0.419 6.419 22 N -0.167 5.167 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.093 0.907 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.150 0.850 30 H 0.169 0.831 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.245 0.755 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.519 -19.145 -4.024 19.878 hybrid contribution 1.817 1.154 1.417 2.577 sum 5.336 -17.991 -2.607 18.946 Atomic orbital electron populations 1.69955 1.06059 1.26928 1.50151 1.25046 0.94912 0.99365 0.95127 0.86538 0.79768 0.83204 0.78174 1.20462 1.21137 1.19919 1.21141 0.93023 0.90376 1.51410 0.92439 1.18796 0.92974 0.90143 0.98151 1.27626 1.09648 1.12148 1.06188 1.70665 0.86842 0.86956 1.12754 1.93126 1.55579 1.83690 1.50542 1.26936 1.15774 1.03557 1.08664 1.20390 0.95042 0.94632 0.88174 1.22270 0.98988 0.95717 0.99515 1.21636 0.95718 0.94638 0.98323 1.22100 0.98592 1.01582 0.91889 1.21006 0.99562 0.91454 0.94074 1.17885 0.77263 0.84508 0.83963 1.43670 1.65666 1.22392 1.07888 1.90809 1.44591 1.19162 1.87333 1.67301 1.10485 1.08410 1.30516 0.92737 0.95333 0.95858 0.90706 0.87489 0.87770 0.84959 0.83123 0.83586 0.83443 0.75475 0.76486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.94 4.98 -27.88 -0.14 0.80 16 10 C -0.42 -7.62 5.86 37.16 0.22 -7.40 16 11 S 1.23 18.39 13.14 -107.50 -1.41 16.98 16 12 O -0.83 -18.11 18.14 -35.23 -0.64 -18.75 16 13 C -0.42 -4.75 6.21 36.01 0.22 -4.53 16 14 C 0.16 1.92 6.04 -82.60 -0.50 1.42 16 15 C -0.14 -1.25 9.75 -39.32 -0.38 -1.63 16 16 C -0.08 -0.63 10.17 -39.31 -0.40 -1.03 16 17 C -0.12 -1.28 9.63 -39.06 -0.38 -1.66 16 18 C 0.08 1.03 6.75 -83.01 -0.56 0.47 16 19 C 0.58 7.86 8.08 -12.18 -0.10 7.76 16 20 N -0.83 -9.09 8.86 30.60 0.27 -8.81 16 21 O -0.54 -8.46 17.16 5.36 0.09 -8.37 16 22 N -0.45 -6.38 9.45 -6.06 -0.06 -6.43 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 27 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.13 0.97 8.08 -51.92 -0.42 0.55 16 30 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.15 1.41 7.64 -52.49 -0.40 1.01 16 33 H 0.41 4.48 8.16 -40.82 -0.33 4.15 16 34 H 0.40 3.46 8.93 -40.82 -0.36 3.10 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -38.55 318.61 -7.67 -46.22 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.02 Total: 2.76 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -2.43 Total: -18.90 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.95 Total: -40.87 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.55 Total: -27.12 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 18.39 SS G_CDS: -1.41 Total: 16.98 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -38.55 -7.67 -46.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320399712.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.401 kcal (2) G-P(sol) polarization free energy of solvation -38.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds