Wall clock time and date at job start Fri Apr 10 2020 14:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99877 * 2 1 4 4 H 1.48492 * 109.47145 * 270.00213 * 3 2 1 5 5 H 1.48506 * 109.46910 * 30.00136 * 3 2 1 6 6 H 1.48496 * 109.46931 * 149.99620 * 3 2 1 7 7 C 1.37877 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00292 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47344 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47274 * 179.97438 * 10 9 7 12 12 O 1.42097 * 109.46799 * 296.38765 * 11 10 9 13 13 C 1.81403 * 102.99716 * 180.02562 * 11 10 9 14 14 C 1.50705 * 109.46948 * 180.02562 * 13 11 10 15 15 C 1.38603 * 119.54936 * 89.99775 * 14 13 11 16 16 C 1.38587 * 119.34759 * 180.02562 * 15 14 13 17 17 C 1.38630 * 118.48820 * 0.28013 * 16 15 14 18 18 C 1.39264 * 119.06364 * 359.45280 * 17 16 15 19 19 C 1.48165 * 119.72722 * 180.25557 * 18 17 16 20 20 N 1.34780 * 120.00496 * 180.30043 * 19 18 17 21 21 O 1.21512 * 119.99779 * 0.29946 * 19 18 17 22 22 N 1.31492 * 119.54686 * 270.02303 * 14 13 11 23 23 H 0.96995 * 120.00360 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47087 * 59.99851 * 9 7 2 25 25 H 1.08999 * 109.46807 * 299.99580 * 9 7 2 26 26 H 1.09001 * 109.46769 * 59.99503 * 10 9 7 27 27 H 1.08994 * 109.47011 * 300.00164 * 10 9 7 28 28 H 1.08996 * 109.47452 * 60.00005 * 13 11 10 29 29 H 1.09002 * 109.47018 * 299.99973 * 13 11 10 30 30 H 1.08000 * 120.32317 * 0.04559 * 15 14 13 31 31 H 1.08002 * 120.75096 * 179.97438 * 16 15 14 32 32 H 1.08001 * 120.46727 * 179.72671 * 17 16 15 33 33 H 0.97001 * 119.99585 * 359.97438 * 20 19 18 34 34 H 0.96996 * 120.00310 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3385 -5.2331 0.0013 12 8 0.5864 -5.3452 1.2017 13 6 2.6652 -6.4701 0.0020 14 6 2.0637 -7.8519 0.0020 15 6 1.7912 -8.4789 -1.2037 16 6 1.2375 -9.7493 -1.1988 17 6 0.9690 -10.3488 0.0220 18 6 1.2739 -9.6622 1.1946 19 6 0.9983 -10.2914 2.5074 20 7 1.2856 -9.6294 3.6457 21 8 0.5132 -11.4044 2.5577 22 7 1.8040 -8.4461 1.1460 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8905 27 1 2.8720 -3.6043 -0.8894 28 1 3.2814 -6.3417 0.8919 29 1 3.2814 -6.3425 -0.8880 30 1 2.0086 -7.9823 -2.1378 31 1 1.0157 -10.2586 -2.1250 32 1 0.5335 -11.3363 0.0631 33 1 1.6732 -8.7411 3.6055 34 1 1.1048 -10.0413 4.5051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320399712.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:23 Heat of formation + Delta-G solvation = -83.926013 kcal Electronic energy + Delta-G solvation = -18711.690051 eV Core-core repulsion = 15541.470218 eV Total energy + Delta-G solvation = -3170.219833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.65762 -39.93229 -36.71681 -35.70635 -34.98934 -34.06721 -33.18364 -32.84440 -29.02503 -27.28124 -25.90163 -23.69830 -22.84248 -21.94031 -19.15999 -18.75558 -18.36272 -18.17180 -17.24346 -16.68367 -16.60121 -16.46828 -16.01463 -15.92713 -15.73377 -15.27755 -14.73309 -14.38019 -14.29391 -14.18331 -13.84369 -13.40855 -12.95524 -12.91180 -12.71699 -12.57830 -11.97024 -11.91166 -11.70679 -11.49967 -11.10226 -10.90811 -10.81725 -10.58630 -10.57696 -9.97584 -9.08756 -8.20046 -6.33123 -0.40762 0.05408 0.81070 1.41205 1.43015 1.53418 1.61899 1.85986 2.32340 2.41328 2.81760 2.93912 3.05293 3.12468 3.62990 3.88326 4.02822 4.12817 4.33211 4.35463 4.46904 4.53036 4.64576 4.89979 5.05820 5.08665 5.15618 5.45684 5.54151 5.61035 5.68827 5.79284 6.13724 6.19315 6.74597 6.82540 7.09867 7.36537 8.90835 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.034679 B = 0.003224 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.214650 B = 8682.081836 C = 9080.745386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.034 3.966 10 C -0.418 4.418 11 S 1.283 4.717 12 O -0.912 6.912 13 C -0.397 4.397 14 C 0.125 3.875 15 C -0.125 4.125 16 C -0.068 4.068 17 C -0.121 4.121 18 C 0.044 3.956 19 C 0.573 3.427 20 N -0.824 5.824 21 O -0.573 6.573 22 N -0.485 5.485 23 H 0.265 0.735 24 H 0.026 0.974 25 H -0.028 1.028 26 H 0.059 0.941 27 H 0.147 0.853 28 H 0.091 0.909 29 H 0.188 0.812 30 H 0.201 0.799 31 H 0.191 0.809 32 H 0.153 0.847 33 H 0.415 0.585 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -19.310 -7.579 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.004 4.004 10 C -0.556 4.556 11 S 1.485 4.515 12 O -0.907 6.907 13 C -0.534 4.534 14 C -0.016 4.016 15 C -0.145 4.145 16 C -0.093 4.093 17 C -0.143 4.143 18 C -0.094 4.094 19 C 0.357 3.643 20 N -0.386 5.386 21 O -0.453 6.453 22 N -0.199 5.199 23 H 0.073 0.927 24 H 0.044 0.956 25 H -0.009 1.009 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.110 0.890 29 H 0.206 0.794 30 H 0.218 0.782 31 H 0.209 0.791 32 H 0.171 0.829 33 H 0.246 0.754 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.511 -19.637 -6.853 21.517 hybrid contribution 1.246 1.165 2.264 2.834 sum 6.757 -18.472 -4.590 20.197 Atomic orbital electron populations 1.70098 1.07888 1.27954 1.51433 1.26036 0.95787 1.03537 0.94707 0.85416 0.78361 0.78187 0.78898 1.18774 1.21309 1.19044 1.21670 0.93738 0.91773 1.50754 0.91544 1.18658 0.93738 0.92445 0.95554 1.27547 1.08545 1.12099 1.07417 1.69660 0.86443 0.85280 1.10100 1.93009 1.59898 1.84756 1.53071 1.26767 1.13987 1.01661 1.10940 1.20696 0.96717 0.95052 0.89182 1.22828 0.96247 0.95529 0.99920 1.22174 0.93953 0.94422 0.98794 1.22383 0.97830 1.01791 0.92304 1.21036 1.01803 0.92021 0.94536 1.18187 0.76901 0.84298 0.84894 1.43621 1.64750 1.22184 1.08039 1.90774 1.46303 1.20341 1.87860 1.67167 1.11367 1.09031 1.32312 0.92655 0.95605 1.00934 0.92148 0.83469 0.88993 0.79418 0.78199 0.79142 0.82899 0.75380 0.75430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.75 4.98 29.85 0.15 1.90 16 10 C -0.42 -14.96 5.86 71.98 0.42 -14.53 16 11 S 1.28 37.13 13.14 -56.49 -0.74 36.39 16 12 O -0.91 -40.98 18.14 -148.98 -2.70 -43.68 16 13 C -0.40 -7.78 6.21 71.24 0.44 -7.34 16 14 C 0.12 2.67 6.04 42.70 0.26 2.93 16 15 C -0.12 -1.55 9.75 22.44 0.22 -1.33 16 16 C -0.07 -0.81 10.17 22.45 0.23 -0.59 16 17 C -0.12 -2.37 9.63 22.61 0.22 -2.15 16 18 C 0.04 1.14 6.75 41.89 0.28 1.42 16 19 C 0.57 15.99 8.08 86.88 0.70 16.69 16 20 N -0.82 -18.79 8.86 -175.38 -1.55 -20.35 16 21 O -0.57 -18.44 17.16 -3.75 -0.06 -18.50 16 22 N -0.49 -13.32 9.45 -173.08 -1.64 -14.95 16 23 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 25 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 26 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.15 3.98 8.14 -2.39 -0.02 3.96 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.19 1.57 8.08 -2.39 -0.02 1.55 16 30 H 0.20 0.43 8.06 -2.91 -0.02 0.41 16 31 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 32 H 0.15 2.72 7.64 -2.91 -0.02 2.70 16 33 H 0.42 9.49 8.16 -92.71 -0.76 8.73 16 34 H 0.41 7.46 8.93 -92.71 -0.83 6.64 16 Total: -1.00 -90.12 318.61 -1.21 -91.33 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -0.44 Total: 13.02 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 3.62 Total: -32.36 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -2.91 Total: -91.52 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -2.77 Total: -62.18 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 37.13 SS G_CDS: -0.74 Total: 36.39 kcal Total: -90.12 -1.21 -91.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320399712.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.404 kcal (2) G-P(sol) polarization free energy of solvation -90.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds