Wall clock time and date at job start Fri Apr 10 2020 14:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.42108 * 109.46797 * 63.60985 * 11 10 9 13 13 C 1.81393 * 103.00232 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47513 * 179.97438 * 13 11 10 15 15 C 1.38599 * 119.54303 * 89.99866 * 14 13 11 16 16 C 1.38590 * 119.35073 * 179.97438 * 15 14 13 17 17 C 1.38635 * 118.48581 * 0.02562 * 16 15 14 18 18 C 1.39271 * 119.06171 * 359.97438 * 17 16 15 19 19 C 1.48165 * 119.72210 * 179.97438 * 18 17 16 20 20 N 1.34775 * 119.99692 * 180.02562 * 19 18 17 21 21 O 1.21512 * 120.00155 * 0.02562 * 19 18 17 22 22 N 1.31488 * 119.55171 * 269.73073 * 14 13 11 23 23 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09001 * 109.47259 * 300.00509 * 13 11 10 29 29 H 1.09010 * 109.47052 * 60.00011 * 13 11 10 30 30 H 1.08000 * 120.33093 * 359.96666 * 15 14 13 31 31 H 1.07996 * 120.75922 * 180.02562 * 16 15 14 32 32 H 1.08000 * 120.46612 * 179.97438 * 17 16 15 33 33 H 0.96998 * 120.00510 * 0.02562 * 20 19 18 34 34 H 0.97001 * 119.99895 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 16 5.8355 -2.6366 -0.0014 12 8 6.3101 -2.0406 1.1982 13 6 6.2436 -4.4040 -0.0003 14 6 7.7410 -4.5739 -0.0020 15 6 8.4215 -4.6498 1.2030 16 6 9.7985 -4.8066 1.1968 17 6 10.4499 -4.8819 -0.0247 18 6 9.7020 -4.7983 -1.1965 19 6 10.3832 -4.8764 -2.5099 20 7 9.6649 -4.7956 -3.6474 21 8 11.5895 -5.0133 -2.5615 22 7 8.3833 -4.6534 -1.1465 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.6796 0.8894 25 1 3.8746 -0.6807 -0.8905 26 1 3.6585 -3.1502 0.8903 27 1 3.6578 -3.1505 -0.8897 28 1 5.8253 -4.8730 0.8904 29 1 5.8239 -4.8744 -0.8896 30 1 7.8842 -4.5873 2.1378 31 1 10.3515 -4.8688 2.1224 32 1 11.5222 -5.0036 -0.0668 33 1 8.7020 -4.6859 -3.6063 34 1 10.1108 -4.8471 -4.5073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320399713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:29 Heat of formation + Delta-G solvation = -47.886952 kcal Electronic energy + Delta-G solvation = -18728.024913 eV Core-core repulsion = 15559.367851 eV Total energy + Delta-G solvation = -3168.657062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88095 -39.04774 -35.40482 -34.13527 -33.76154 -33.30974 -32.43534 -31.30079 -28.20466 -25.66350 -25.12489 -22.67776 -21.27749 -20.74271 -18.35232 -17.42354 -17.39088 -16.87350 -16.55306 -15.90278 -15.55243 -15.15914 -14.96908 -14.53256 -14.22831 -14.18137 -13.70691 -13.54154 -13.21934 -12.97424 -12.68630 -12.26082 -11.90582 -11.57182 -11.11216 -10.80424 -10.73606 -10.32255 -10.27368 -10.04099 -9.97155 -9.89910 -9.76228 -9.40676 -8.98512 -8.62494 -7.88865 -6.12788 -4.12709 0.34849 0.80425 1.76510 2.50159 2.90674 3.08598 3.26161 3.34905 3.40097 3.60159 3.70840 4.10162 4.34456 4.38653 4.57193 4.71578 4.75781 5.08002 5.18775 5.20334 5.24411 5.65614 5.71015 5.75672 5.83227 5.88759 6.25161 6.46356 6.52459 6.99024 6.99965 7.13586 7.46217 7.63963 7.94520 8.42722 8.89946 9.48115 11.00100 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.003470 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.556489 B = 8068.022716 C = 8393.288002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.408 4.408 11 S 1.226 4.774 12 O -0.844 6.844 13 C -0.409 4.409 14 C 0.158 3.842 15 C -0.137 4.137 16 C -0.077 4.077 17 C -0.117 4.117 18 C 0.075 3.925 19 C 0.582 3.418 20 N -0.834 5.834 21 O -0.540 6.540 22 N -0.453 5.453 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.024 0.976 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.415 0.585 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.701 -11.175 -5.026 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.547 4.547 11 S 1.426 4.574 12 O -0.839 6.839 13 C -0.542 4.542 14 C 0.017 3.983 15 C -0.158 4.158 16 C -0.102 4.102 17 C -0.138 4.138 18 C -0.064 4.064 19 C 0.365 3.635 20 N -0.397 5.397 21 O -0.417 6.417 22 N -0.166 5.166 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.245 0.755 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 19.519 -10.364 -5.655 22.812 hybrid contribution -0.575 -0.238 2.353 2.434 sum 18.944 -10.602 -3.302 21.958 Atomic orbital electron populations 1.69896 1.06283 1.27107 1.50567 1.25010 0.94771 0.99190 0.94332 0.86867 0.80660 0.83630 0.78878 1.19749 1.21101 1.18765 1.21010 0.88638 0.94646 1.51577 0.90797 1.19252 0.98243 0.88896 0.97162 1.27442 1.14038 1.06202 1.07062 1.70909 0.90258 0.83867 1.12411 1.93093 1.74976 1.64822 1.51017 1.26807 0.94135 1.24287 1.09001 1.20282 0.94565 0.95335 0.88105 1.22286 0.95341 0.98336 0.99793 1.21629 0.94171 0.95910 0.98519 1.22101 1.02150 0.97783 0.91790 1.20991 0.89800 1.01582 0.94023 1.17826 0.86073 0.75759 0.83846 1.43645 1.13022 1.75187 1.07853 1.90827 1.13654 1.49921 1.87249 1.67253 1.08403 1.11204 1.29772 0.92536 0.95937 0.95812 0.90118 0.86792 0.87849 0.84442 0.84186 0.83792 0.83345 0.75467 0.76390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C 0.00 0.08 4.05 -27.88 -0.11 -0.04 16 10 C -0.41 -7.10 5.86 37.16 0.22 -6.88 16 11 S 1.23 17.26 13.14 -107.50 -1.41 15.85 16 12 O -0.84 -16.76 18.14 -35.23 -0.64 -17.40 16 13 C -0.41 -4.42 6.20 36.01 0.22 -4.20 16 14 C 0.16 1.83 6.04 -82.61 -0.50 1.33 16 15 C -0.14 -1.52 9.75 -39.32 -0.38 -1.90 16 16 C -0.08 -0.72 10.17 -39.31 -0.40 -1.12 16 17 C -0.12 -1.19 9.63 -39.05 -0.38 -1.56 16 18 C 0.07 0.83 6.75 -83.01 -0.56 0.27 16 19 C 0.58 6.30 8.08 -12.18 -0.10 6.20 16 20 N -0.83 -6.02 8.86 30.60 0.27 -5.75 16 21 O -0.54 -7.37 17.16 5.36 0.09 -7.28 16 22 N -0.45 -4.97 9.45 -6.06 -0.06 -5.03 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.08 1.48 8.14 -51.92 -0.42 1.05 16 27 H 0.11 1.69 8.14 -51.92 -0.42 1.26 16 28 H 0.10 1.09 8.08 -51.92 -0.42 0.67 16 29 H 0.14 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.15 1.34 7.64 -52.49 -0.40 0.93 16 33 H 0.41 2.42 8.16 -40.82 -0.33 2.09 16 34 H 0.41 2.15 8.93 -40.82 -0.36 1.78 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -37.32 315.01 -7.30 -44.61 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.98 Total: 0.88 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.42 Total: -20.78 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.99 Total: -37.25 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.55 Total: -24.67 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 17.26 SS G_CDS: -1.41 Total: 15.85 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.32 -7.30 -44.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320399713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.273 kcal (2) G-P(sol) polarization free energy of solvation -37.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds