Wall clock time and date at job start Fri Apr 10 2020 15:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00039 * 2 1 4 4 H 1.48507 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47350 * 300.00133 * 3 2 1 6 6 H 1.48497 * 109.47322 * 60.00072 * 3 2 1 7 7 C 1.37884 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99525 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47159 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99934 * 180.02562 * 11 10 9 13 13 O 1.21285 * 119.99915 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00024 * 179.97438 * 12 11 10 15 15 S 1.81398 * 109.47083 * 180.02562 * 14 12 11 16 16 C 1.76203 * 103.00313 * 180.02562 * 15 14 12 17 17 C 1.39079 * 119.70170 * 15.83261 * 16 15 14 18 18 C 1.38362 * 119.10666 * 179.97438 * 17 16 15 19 19 C 1.38848 * 118.52392 * 0.02562 * 18 17 16 20 20 C 1.38098 * 119.32952 * 0.02562 * 19 18 17 21 21 N 1.31991 * 120.84897 * 359.97438 * 20 19 18 22 22 O 1.41603 * 119.20190 * 180.02562 * 21 20 19 23 23 H 0.96994 * 120.00223 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46586 * 60.01034 * 9 7 2 25 25 H 1.08997 * 109.47285 * 300.00513 * 9 7 2 26 26 H 1.09000 * 109.46743 * 59.99929 * 10 9 7 27 27 H 1.08998 * 109.46873 * 300.00679 * 10 9 7 28 28 H 0.96996 * 120.00296 * 0.02562 * 11 10 9 29 29 H 1.09008 * 109.47191 * 60.00604 * 14 12 11 30 30 H 1.08998 * 109.47782 * 300.00184 * 14 12 11 31 31 H 1.07995 * 120.45343 * 359.97438 * 17 16 15 32 32 H 1.08007 * 120.74237 * 180.29519 * 18 17 16 33 33 H 1.07997 * 120.33128 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.57583 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0981 -0.0007 13 8 3.3995 -6.0981 0.0006 14 6 1.4332 -7.4031 -0.0008 15 16 2.6120 -8.7819 0.0006 16 6 1.5647 -10.1989 -0.0004 17 6 0.2208 -10.0623 -0.3314 18 6 -0.5904 -11.1832 -0.3288 19 6 -0.0281 -12.4077 0.0066 20 6 1.3139 -12.4710 0.3260 21 7 2.0642 -11.3852 0.3153 22 8 3.4365 -11.4903 0.6482 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.5428 -4.9308 -0.0019 29 1 0.8069 -7.4610 -0.8911 30 1 0.8062 -7.4608 0.8889 31 1 -0.1843 -9.0944 -0.5871 32 1 -1.6366 -11.1082 -0.5862 33 1 -0.6345 -13.3013 0.0184 34 1 1.7553 -13.4214 0.5879 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337696588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:27 Heat of formation + Delta-G solvation = 22.025541 kcal Electronic energy + Delta-G solvation = -18281.847761 eV Core-core repulsion = 15116.222333 eV Total energy + Delta-G solvation = -3165.625429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40791 -39.40182 -35.07152 -34.96853 -33.00956 -32.50719 -30.87382 -30.00055 -28.97185 -24.89816 -24.82486 -24.33148 -21.22628 -20.57493 -19.05750 -17.80823 -17.19061 -16.94921 -16.37932 -16.01623 -15.80326 -15.57155 -15.32040 -14.90894 -14.50734 -14.23445 -13.89470 -13.27649 -12.74422 -12.62589 -12.46079 -12.33448 -11.62567 -11.29057 -11.10814 -10.77066 -10.68615 -10.44974 -10.41946 -10.03841 -9.63394 -9.44422 -9.31042 -8.91284 -8.71750 -8.46771 -7.89873 -6.16265 -4.19160 0.02504 0.21768 0.63442 1.86628 2.31340 2.65823 2.66861 3.24714 3.31896 3.35082 3.41567 3.94172 4.08575 4.12383 4.29591 4.36329 4.58560 4.67193 4.72895 4.92420 5.11515 5.21383 5.32653 5.39529 6.18544 6.23142 6.31588 6.60569 6.69717 6.75574 7.40833 7.51168 7.73165 7.82184 8.17516 8.36297 8.86942 9.46359 10.95369 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.045805 B = 0.002628 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.146441 B =10651.324279 C =11210.965623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.713 5.713 12 C 0.526 3.474 13 O -0.528 6.528 14 C -0.186 4.186 15 S 0.108 5.892 16 C 0.058 3.942 17 C -0.145 4.145 18 C -0.058 4.058 19 C -0.139 4.139 20 C 0.092 3.908 21 N -0.114 5.114 22 O -0.532 6.532 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.400 0.600 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 -23.342 -1.539 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.363 5.363 12 C 0.308 3.692 13 O -0.405 6.405 14 C -0.338 4.338 15 S 0.351 5.649 16 C -0.179 4.179 17 C -0.171 4.171 18 C -0.085 4.085 19 C -0.162 4.162 20 C -0.055 4.055 21 N 0.203 4.797 22 O -0.587 6.587 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.234 0.766 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.178 0.822 32 H 0.173 0.827 33 H 0.181 0.819 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.248 -23.017 -1.424 23.893 hybrid contribution -1.566 0.709 0.004 1.719 sum -7.814 -22.308 -1.419 23.679 Atomic orbital electron populations 1.69952 1.06113 1.26874 1.50386 1.24996 0.94907 0.99489 0.94884 0.86447 0.80211 0.83215 0.77657 1.19524 1.20898 1.20891 1.21078 0.93343 0.90280 1.51386 0.92107 1.19336 0.94172 0.91066 0.97908 1.21836 0.96150 0.80870 1.01250 1.46232 1.10648 1.06100 1.73319 1.19307 0.87838 0.84156 0.77892 1.90772 1.13275 1.86936 1.49537 1.24257 1.03919 0.97412 1.08169 1.87591 1.02071 0.87578 1.87699 1.23743 0.97866 0.94188 1.02131 1.21882 0.90909 1.02073 1.02264 1.21719 1.01115 0.91514 0.94166 1.21791 0.93687 1.00047 1.00672 1.22682 0.91524 0.93192 0.98122 1.43034 1.12834 1.01985 1.21876 1.97668 0.82125 1.96271 1.82641 0.92844 0.95864 0.95867 0.92145 0.92159 0.76639 0.86212 0.85951 0.82192 0.82693 0.81893 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.42 5.61 -4.04 -0.02 2.39 16 11 N -0.71 -11.01 5.56 -60.30 -0.33 -11.35 16 12 C 0.53 8.03 7.85 -10.99 -0.09 7.95 16 13 O -0.53 -10.48 15.86 5.55 0.09 -10.39 16 14 C -0.19 -1.88 5.12 36.00 0.18 -1.70 16 15 S 0.11 1.49 20.27 -107.50 -2.18 -0.68 16 16 C 0.06 0.66 6.93 -16.94 -0.12 0.54 16 17 C -0.15 -0.93 9.38 -39.22 -0.37 -1.30 16 18 C -0.06 -0.22 10.17 -39.31 -0.40 -0.62 16 19 C -0.14 -0.55 10.11 -39.41 -0.40 -0.95 16 20 C 0.09 0.74 10.69 -17.53 -0.19 0.55 16 21 N -0.11 -1.52 3.60 -12.10 -0.04 -1.56 16 22 O -0.53 -10.66 19.21 -11.47 -0.22 -10.88 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.40 4.96 8.47 -40.82 -0.35 4.62 16 29 H 0.12 0.78 7.09 -51.92 -0.37 0.42 16 30 H 0.12 0.91 8.14 -51.92 -0.42 0.48 16 31 H 0.16 0.60 5.97 -52.49 -0.31 0.28 16 32 H 0.16 0.06 8.06 -52.48 -0.42 -0.37 16 33 H 0.16 0.02 8.06 -52.49 -0.42 -0.40 16 34 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -39.17 316.61 -8.10 -47.27 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.95 Total: -2.61 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.95 Total: -5.83 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.36 Total: -37.61 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.13 Total: -21.27 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.18 Total: -0.68 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -39.17 -8.10 -47.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337696588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.294 kcal (2) G-P(sol) polarization free energy of solvation -39.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds