Wall clock time and date at job start Fri Apr 10 2020 14:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31370 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48500 * 109.46884 * 273.65039 * 3 2 1 5 5 H 1.48499 * 109.47446 * 33.65006 * 3 2 1 6 6 H 1.48498 * 109.47169 * 153.65266 * 3 2 1 7 7 C 1.39032 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00100 * 29.27349 * 7 2 1 9 9 N 1.36900 * 119.99871 * 208.99789 * 7 2 1 10 10 C 1.46501 * 119.99861 * 41.50286 * 9 7 2 11 11 C 1.53002 * 109.47215 * 93.49546 * 10 9 7 12 12 C 1.50700 * 109.46887 * 179.97438 * 11 10 9 13 13 O 1.20828 * 120.00263 * 359.97438 * 12 11 10 14 14 O 1.34231 * 119.99650 * 180.02562 * 12 11 10 15 15 C 1.34770 * 119.99960 * 221.49953 * 9 7 2 16 16 O 1.21606 * 120.00096 * 186.57834 * 15 9 7 17 17 C 1.47621 * 120.00146 * 6.56937 * 15 9 7 18 18 C 1.40209 * 120.53690 * 206.02101 * 17 15 9 19 19 C 1.38146 * 118.31303 * 180.02562 * 18 17 15 20 20 C 1.38761 * 119.29279 * 359.97438 * 19 18 17 21 21 F 1.35102 * 119.48283 * 180.02562 * 20 19 18 22 22 N 1.32153 * 121.03246 * 0.02562 * 20 19 18 23 23 C 1.31681 * 121.84433 * 359.69603 * 22 20 19 24 24 H 0.97003 * 120.00181 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46769 * 213.49382 * 10 9 7 26 26 H 1.09006 * 109.46996 * 333.49418 * 10 9 7 27 27 H 1.08996 * 109.47118 * 299.99622 * 11 10 9 28 28 H 1.08994 * 109.46888 * 60.00148 * 11 10 9 29 29 H 0.96701 * 116.99558 * 180.02562 * 14 12 11 30 30 H 1.07998 * 120.84572 * 359.97438 * 18 17 15 31 31 H 1.08001 * 120.34638 * 179.97438 * 19 18 17 32 32 H 1.07999 * 119.70880 * 180.31960 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4179 2.0910 -1.3973 5 1 1.4858 2.6292 0.7758 6 1 3.5817 1.4193 0.6214 7 6 2.0089 -1.2040 0.0005 8 1 1.5724 -2.0798 -0.4564 9 7 3.2492 -1.2780 0.5753 10 6 3.5082 -0.6005 1.8482 11 6 3.2806 -1.5789 3.0023 12 6 3.5476 -0.8821 4.3116 13 8 3.8858 0.2778 4.3207 14 8 3.4108 -1.5505 5.4676 15 6 4.2319 -1.9741 -0.0297 16 8 5.2957 -2.1407 0.5353 17 6 4.0168 -2.5344 -1.3784 18 6 4.7336 -3.6617 -1.8041 19 6 4.4965 -4.1473 -3.0755 20 6 3.5649 -3.5102 -3.8828 21 9 3.3296 -3.9822 -5.1266 22 7 2.9043 -2.4491 -3.4540 23 6 3.0927 -1.9536 -2.2486 24 1 -0.4850 0.8401 -0.0004 25 1 4.5394 -0.2480 1.8688 26 1 2.8319 0.2480 1.9524 27 1 2.2494 -1.9315 2.9817 28 1 3.9569 -2.4273 2.8981 29 1 3.5927 -1.0613 6.2816 30 1 5.4535 -4.1379 -1.1549 31 1 5.0306 -5.0136 -3.4371 32 1 2.5301 -1.0879 -1.9318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:12 Heat of formation + Delta-G solvation = -117.353785 kcal Electronic energy + Delta-G solvation = -21909.003241 eV Core-core repulsion = 18171.120695 eV Total energy + Delta-G solvation = -3737.882546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.74592 -40.22848 -39.85765 -38.34015 -36.01918 -35.37080 -32.63821 -32.25962 -31.58607 -29.94372 -25.46496 -25.16461 -23.43950 -22.99541 -20.91924 -19.64214 -18.10711 -17.81127 -17.54590 -17.05853 -16.38477 -16.20784 -15.76348 -15.66807 -14.87389 -14.76529 -14.20751 -13.91772 -13.55041 -13.35298 -13.01062 -12.83834 -12.74588 -12.72127 -12.46901 -12.09254 -11.86711 -11.35254 -11.15437 -10.99265 -10.47194 -10.35306 -10.02500 -9.76936 -9.65900 -9.17595 -8.89873 -8.55333 -8.09276 -6.83235 -4.40404 1.03009 1.49025 2.45759 2.97974 3.11276 3.15206 3.20725 3.43975 3.90465 3.92942 4.13631 4.17185 4.60596 4.92382 5.16235 5.27913 5.33339 5.43812 5.51342 5.73098 5.82882 6.00919 6.13110 6.17175 6.28761 6.45506 6.57323 6.68572 6.97143 7.06667 7.72557 7.93071 8.06322 8.09968 8.60978 8.98269 9.33008 10.23821 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.018368 B = 0.006040 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.997675 B = 4634.335506 C = 5634.981672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.081 3.919 3 Si 0.849 3.151 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.447 5.447 10 C 0.128 3.872 11 C -0.126 4.126 12 C 0.485 3.515 13 O -0.521 6.521 14 O -0.520 6.520 15 C 0.522 3.478 16 O -0.587 6.587 17 C -0.166 4.166 18 C -0.011 4.011 19 C -0.215 4.215 20 C 0.304 3.696 21 F -0.121 7.121 22 N -0.524 5.524 23 C 0.185 3.815 24 H 0.282 0.718 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.404 0.596 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 -4.255 1.863 6.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.132 4.132 3 Si 0.672 3.328 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.172 1.172 7 C -0.501 4.501 8 H 0.126 0.874 9 N -0.166 5.166 10 C 0.004 3.996 11 C -0.165 4.165 12 C 0.328 3.672 13 O -0.409 6.409 14 O -0.332 6.332 15 C 0.312 3.688 16 O -0.473 6.473 17 C -0.171 4.171 18 C -0.037 4.037 19 C -0.236 4.236 20 C 0.151 3.849 21 F -0.100 7.100 22 N -0.239 5.239 23 C 0.028 3.972 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.262 0.738 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.383 -3.750 1.187 5.889 hybrid contribution 0.705 0.646 0.773 1.230 sum 5.089 -3.104 1.960 6.275 Atomic orbital electron populations 1.69842 1.06697 1.29239 1.39493 1.25415 0.94880 0.98820 0.94102 0.87345 0.82277 0.83447 0.79745 1.19341 1.20045 1.17151 1.19048 0.91399 0.98097 1.41559 0.87369 1.43487 1.10251 1.46164 1.16690 1.21500 1.02181 0.93616 0.82267 1.21797 1.06014 1.01061 0.87603 1.23701 0.72320 0.85272 0.85903 1.90699 1.43839 1.18398 1.87970 1.84583 1.82686 1.48547 1.17338 1.17989 0.83326 0.82744 0.84763 1.90668 1.26453 1.63603 1.66558 1.21015 1.00163 0.98503 0.97399 1.21524 0.95483 0.92705 0.94015 1.21599 1.02371 1.04013 0.95641 1.18546 0.93522 0.91933 0.80930 1.91577 1.93470 1.86370 1.38576 1.67321 1.26442 1.11627 1.18512 1.24408 0.90654 0.97899 0.84207 0.90740 0.90397 0.90225 0.86724 0.87384 0.73837 0.83504 0.83898 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.17 13.95 55.50 0.77 -19.40 16 2 C 0.08 1.88 4.82 -17.45 -0.08 1.80 16 3 Si 0.85 18.16 26.36 -169.99 -4.48 13.68 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.25 -5.32 5.69 56.52 0.32 -5.00 16 7 C -0.38 -8.46 6.24 -14.99 -0.09 -8.56 16 8 H 0.11 2.60 6.95 -52.49 -0.36 2.24 16 9 N -0.45 -9.55 2.07 -115.96 -0.24 -9.79 16 10 C 0.13 2.60 2.76 -4.04 -0.01 2.59 16 11 C -0.13 -2.17 6.12 -27.88 -0.17 -2.34 16 12 C 0.49 7.88 8.33 36.01 0.30 8.18 16 13 O -0.52 -9.88 16.74 -18.75 -0.31 -10.19 16 14 O -0.52 -6.58 13.42 -39.26 -0.53 -7.11 16 15 C 0.52 11.04 7.42 -12.43 -0.09 10.95 16 16 O -0.59 -13.24 16.41 5.27 0.09 -13.15 16 17 C -0.17 -3.18 5.57 -104.82 -0.58 -3.76 16 18 C -0.01 -0.18 9.72 -38.88 -0.38 -0.55 16 19 C -0.21 -3.14 10.07 -39.42 -0.40 -3.54 16 20 C 0.30 5.19 8.41 -17.22 -0.14 5.04 16 21 F -0.12 -1.96 17.29 2.25 0.04 -1.92 16 22 N -0.52 -10.20 10.36 -13.20 -0.14 -10.34 16 23 C 0.18 3.65 9.14 -17.11 -0.16 3.50 16 24 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 25 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 26 H 0.08 1.68 4.64 -51.93 -0.24 1.44 16 27 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 28 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 29 H 0.40 3.18 9.10 45.56 0.41 3.59 16 30 H 0.15 2.11 7.93 -52.49 -0.42 1.70 16 31 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.21 4.36 5.13 -52.49 -0.27 4.09 16 LS Contribution 289.07 15.07 4.36 4.36 Total: -1.00 -27.88 289.07 -4.01 -31.88 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -1.75 Total: 8.67 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -1.81 Total: 13.30 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.40 Total: -39.52 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.75 Total: -30.45 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -4.48 Total: 13.68 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.88 -4.01 -31.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.469 kcal (2) G-P(sol) polarization free energy of solvation -27.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds