Wall clock time and date at job start Fri Apr 10 2020 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00501 * 2 1 4 4 H 1.48494 * 109.47535 * 240.00579 * 3 2 1 5 5 H 1.48503 * 109.46777 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 119.99829 * 3 2 1 7 7 C 1.38950 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99891 * 201.64076 * 7 2 1 9 9 N 1.37097 * 120.00326 * 21.63649 * 7 2 1 10 10 C 1.46511 * 119.99716 * 16.51423 * 9 7 2 11 11 C 1.50701 * 109.47043 * 264.06549 * 10 9 7 12 12 O 1.20829 * 119.99849 * 0.02562 * 11 10 9 13 13 O 1.34229 * 119.99731 * 179.97438 * 11 10 9 14 14 C 1.34773 * 120.00377 * 196.51585 * 9 7 2 15 15 O 1.21291 * 120.00387 * 359.97438 * 14 9 7 16 16 C 1.50703 * 119.99992 * 180.02562 * 14 9 7 17 17 C 1.50707 * 109.47180 * 180.02562 * 16 14 9 18 18 C 1.38234 * 119.58933 * 124.99500 * 17 16 14 19 19 C 1.38591 * 119.18400 * 179.97438 * 18 17 16 20 20 C 1.38877 * 118.40284 * 0.26274 * 19 18 17 21 21 F 1.35099 * 120.44666 * 179.74772 * 20 19 18 22 22 C 1.38425 * 119.11197 * 359.51255 * 20 19 18 23 23 N 1.31849 * 119.58837 * 305.01980 * 17 16 14 24 24 H 0.97001 * 119.99739 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46802 * 24.06407 * 10 9 7 26 26 H 1.08998 * 109.46801 * 144.06986 * 10 9 7 27 27 H 0.96704 * 116.99336 * 180.02562 * 13 11 10 28 28 H 1.08994 * 109.47524 * 59.99649 * 16 14 9 29 29 H 1.09002 * 109.47297 * 299.99844 * 16 14 9 30 30 H 1.07995 * 120.40933 * 0.02760 * 18 17 16 31 31 H 1.08002 * 120.79924 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.63524 * 180.20677 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0317 -1.2365 0.3444 9 7 1.3958 -2.3487 -0.4388 10 6 0.1670 -2.2641 -1.2322 11 6 -1.0273 -2.4241 -0.3272 12 8 -0.8684 -2.5911 0.8589 13 8 -2.2676 -2.3801 -0.8386 14 6 1.9234 -3.5522 -0.1398 15 8 2.9409 -3.6223 0.5166 16 6 1.2498 -4.8111 -0.6221 17 6 2.0339 -6.0107 -0.1558 18 6 1.3993 -7.0003 0.5715 19 6 2.1283 -8.1000 0.9956 20 6 3.4782 -8.1613 0.6751 21 9 4.2291 -9.2120 1.0720 22 6 4.0430 -7.1338 -0.0607 23 7 3.3167 -6.1030 -0.4463 24 1 -0.4850 0.8401 0.0004 25 1 0.1203 -1.2943 -1.7274 26 1 0.1634 -3.0555 -1.9818 27 1 -3.0020 -2.4873 -0.2187 28 1 1.2066 -4.8057 -1.7112 29 1 0.2383 -4.8594 -0.2187 30 1 0.3483 -6.9179 0.8056 31 1 1.6590 -8.8882 1.5657 32 1 5.0913 -7.1745 -0.3175 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:32 Heat of formation + Delta-G solvation = -141.194095 kcal Electronic energy + Delta-G solvation = -21962.669915 eV Core-core repulsion = 18223.753576 eV Total energy + Delta-G solvation = -3738.916339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.97790 -41.49467 -40.86563 -39.69966 -36.95839 -36.29562 -34.02300 -33.46203 -33.31786 -29.63588 -29.04664 -26.49402 -24.91607 -23.59487 -22.73813 -20.79868 -18.98258 -18.65777 -18.62065 -18.40885 -17.89125 -17.31245 -17.06612 -16.80687 -16.40651 -16.16850 -15.79487 -15.55243 -14.96152 -14.82304 -14.61176 -13.99323 -13.92517 -13.66168 -13.47488 -13.31696 -13.10057 -12.89822 -12.63492 -12.33184 -12.14191 -12.06206 -11.46563 -10.92485 -10.90573 -10.56131 -10.38125 -9.83167 -9.78291 -8.41248 -5.91212 -0.11391 0.17685 1.39540 1.43884 1.53942 1.74334 1.93897 2.27087 2.56824 2.59695 2.99262 3.00523 3.18465 3.31889 3.64175 3.79463 3.87396 4.06453 4.26720 4.34440 4.49307 4.61717 4.75400 4.82243 4.85976 4.98612 5.00183 5.48295 5.63138 6.00979 6.05003 6.43622 6.94740 7.15721 7.34779 7.51123 7.99221 8.65328 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.005025 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.678724 B = 5570.746274 C = 6487.202899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.285 1.285 7 C -0.338 4.338 8 H 0.074 0.926 9 N -0.448 5.448 10 C 0.139 3.861 11 C 0.497 3.503 12 O -0.548 6.548 13 O -0.517 6.517 14 C 0.459 3.541 15 O -0.608 6.608 16 C -0.080 4.080 17 C 0.123 3.877 18 C -0.136 4.136 19 C -0.101 4.101 20 C 0.033 3.967 21 F -0.132 7.132 22 C 0.065 3.935 23 N -0.464 5.464 24 H 0.274 0.726 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.414 0.586 28 H 0.130 0.870 29 H 0.113 0.887 30 H 0.173 0.827 31 H 0.182 0.818 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 -12.057 -4.843 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.200 4.200 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.211 1.211 7 C -0.466 4.466 8 H 0.092 0.908 9 N -0.168 5.168 10 C 0.014 3.986 11 C 0.339 3.661 12 O -0.438 6.438 13 O -0.330 6.330 14 C 0.249 3.751 15 O -0.493 6.493 16 C -0.120 4.120 17 C -0.015 4.015 18 C -0.156 4.156 19 C -0.127 4.127 20 C 0.011 3.989 21 F -0.111 7.111 22 C -0.094 4.094 23 N -0.172 5.172 24 H 0.084 0.916 25 H 0.136 0.864 26 H 0.144 0.856 27 H 0.273 0.727 28 H 0.147 0.853 29 H 0.131 0.869 30 H 0.190 0.810 31 H 0.199 0.801 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.383 -11.294 -4.945 12.785 hybrid contribution -0.243 0.289 1.420 1.470 sum -3.626 -11.005 -3.525 12.111 Atomic orbital electron populations 1.69862 1.06583 1.28650 1.48006 1.25855 0.96124 1.02034 0.95964 0.85084 0.77958 0.76995 0.78775 1.18852 1.19677 1.21123 1.19504 0.97238 0.85476 1.44371 0.90841 1.43557 1.21540 1.04929 1.46735 1.20887 0.80105 1.06156 0.91466 1.23814 0.84385 0.69669 0.88196 1.90614 1.86664 1.47210 1.19267 1.84457 1.16696 1.85384 1.46432 1.20621 0.86721 0.85004 0.82770 1.90521 1.28040 1.87045 1.43664 1.20610 0.98742 0.88485 1.04180 1.20937 0.90136 0.94986 0.95455 1.22170 1.03181 0.93046 0.97159 1.21932 0.91707 0.99861 0.99192 1.18882 0.91177 0.87363 1.01436 1.91499 1.75945 1.54662 1.88988 1.23164 1.01685 0.88539 0.96014 1.67461 1.07253 1.21694 1.20821 0.91606 0.86390 0.85640 0.72663 0.85250 0.86888 0.81002 0.80093 0.80582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.58 9.28 21.66 0.20 -45.38 16 2 C 0.00 0.09 4.87 84.93 0.41 0.50 16 3 Si 0.99 42.13 29.60 68.60 2.03 44.16 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.34 -19.00 9.34 84.04 0.79 -18.21 16 8 H 0.07 4.50 7.37 -2.91 -0.02 4.48 16 9 N -0.45 -22.29 2.18 -639.58 -1.39 -23.69 16 10 C 0.14 5.60 4.97 85.63 0.43 6.02 16 11 C 0.50 20.03 5.86 71.24 0.42 20.45 16 12 O -0.55 -26.93 16.79 21.95 0.37 -26.56 16 13 O -0.52 -15.85 13.42 -51.41 -0.69 -16.54 16 14 C 0.46 22.33 7.35 87.66 0.64 22.98 16 15 O -0.61 -35.12 14.97 -3.06 -0.05 -35.16 16 16 C -0.08 -2.77 4.71 29.10 0.14 -2.63 16 17 C 0.12 4.16 5.76 42.56 0.25 4.40 16 18 C -0.14 -3.50 9.71 22.35 0.22 -3.28 16 19 C -0.10 -2.28 10.16 22.51 0.23 -2.06 16 20 C 0.03 0.87 7.35 22.47 0.17 1.03 16 21 F -0.13 -3.26 17.28 44.97 0.78 -2.49 16 22 C 0.07 1.99 11.17 84.73 0.95 2.93 16 23 N -0.46 -17.23 9.22 -183.70 -1.69 -18.93 16 24 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 25 H 0.12 5.02 6.37 -2.39 -0.02 5.00 16 26 H 0.13 3.72 6.69 -2.39 -0.02 3.70 16 27 H 0.41 9.19 9.10 -74.05 -0.67 8.51 16 28 H 0.13 3.62 7.42 -2.39 -0.02 3.60 16 29 H 0.11 3.45 7.24 -2.39 -0.02 3.44 16 30 H 0.17 3.30 7.95 -2.91 -0.02 3.28 16 31 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.18 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -77.71 291.89 4.70 -73.01 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.52 Total: 19.45 kcal Atomic # 6 Polarization: 27.51 SS G_CDS: 4.63 Total: 32.14 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.88 Total: -88.00 kcal Atomic # 8 Polarization: -77.90 SS G_CDS: -0.37 Total: -78.27 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -77.71 4.70 -73.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.186 kcal (2) G-P(sol) polarization free energy of solvation -77.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds