Wall clock time and date at job start Fri Apr 10 2020 14:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34626 * 125.85141 * 2 1 4 4 C 1.34269 * 109.53806 * 180.17355 * 3 2 1 5 5 C 1.34488 * 108.57316 * 359.61653 * 4 3 2 6 6 C 1.35028 * 125.85312 * 179.75969 * 2 1 3 7 7 S 1.76195 * 126.63707 * 359.97438 * 6 2 1 8 8 C 1.81406 * 102.99765 * 180.02562 * 7 6 2 9 9 H 1.08999 * 109.47015 * 305.00374 * 8 7 6 10 10 C 1.53001 * 109.46981 * 65.00215 * 8 7 6 11 11 C 1.50700 * 109.47304 * 185.00246 * 8 7 6 12 12 O 1.21280 * 119.99622 * 340.00326 * 11 8 7 13 13 N 1.34767 * 120.00436 * 159.99997 * 11 8 7 14 14 C 1.46508 * 119.99848 * 0.02562 * 13 11 8 15 15 C 1.46500 * 120.00352 * 179.97438 * 13 11 8 16 16 C 1.50705 * 109.46905 * 90.00255 * 15 13 11 17 17 H 1.07994 * 119.99910 * 0.02562 * 16 15 13 18 18 C 1.37872 * 119.99772 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00221 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00121 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46925 * 89.99901 * 20 18 16 22 22 H 1.48493 * 109.47452 * 209.99796 * 20 18 16 23 23 H 1.48499 * 109.46884 * 330.00259 * 20 18 16 24 24 H 1.08997 * 109.47313 * 270.24452 * 1 2 3 25 25 H 1.09002 * 109.47367 * 30.23924 * 1 2 3 26 26 H 1.09001 * 109.47573 * 150.24164 * 1 2 3 27 27 H 1.08002 * 125.71736 * 179.89105 * 4 3 2 28 28 H 1.07996 * 126.56079 * 180.24933 * 5 4 3 29 29 H 1.08997 * 109.46827 * 300.00217 * 10 8 7 30 30 H 1.08999 * 109.47116 * 60.00220 * 10 8 7 31 31 H 1.09000 * 109.47204 * 179.97438 * 10 8 7 32 32 H 1.08997 * 109.47415 * 89.99575 * 14 13 11 33 33 H 1.09000 * 109.46883 * 210.00475 * 14 13 11 34 34 H 1.09002 * 109.46989 * 329.99632 * 14 13 11 35 35 H 1.09005 * 109.47163 * 210.00079 * 15 13 11 36 36 H 1.08998 * 109.47211 * 329.99940 * 15 13 11 37 37 H 0.97002 * 120.00026 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2954 1.0912 0.0000 4 6 3.5841 0.7140 -0.0038 5 6 3.6371 -0.6298 0.0022 6 6 2.2978 -1.0944 0.0046 7 16 1.7677 -2.7747 0.0123 8 6 3.3306 -3.6956 0.0166 9 1 3.9430 -3.3760 -0.8266 10 6 4.0794 -3.4233 1.3228 11 6 3.0450 -5.1706 -0.1005 12 8 1.9459 -5.5996 0.1806 13 7 4.0106 -6.0131 -0.5178 14 6 5.3384 -5.4949 -0.8570 15 6 3.7330 -7.4471 -0.6311 16 6 3.2200 -7.7515 -2.0151 17 1 3.1120 -6.9565 -2.7379 18 6 2.8886 -9.0451 -2.3582 19 7 3.0206 -10.0134 -1.4781 20 14 2.2521 -9.4225 -4.0734 21 1 3.3949 -9.7422 -4.9663 22 1 1.3298 -10.5848 -4.0145 23 1 1.5258 -8.2405 -4.6030 24 1 -0.3634 0.0044 1.0276 25 1 -0.3634 0.8878 -0.5175 26 1 -0.3634 -0.8921 -0.5101 27 1 4.4355 1.3785 -0.0064 28 1 4.5293 -1.2384 0.0049 29 1 4.2860 -2.3564 1.4075 30 1 3.4671 -3.7429 2.1660 31 1 5.0183 -3.9770 1.3256 32 1 5.9693 -5.5024 0.0318 33 1 5.7874 -6.1224 -1.6268 34 1 5.2461 -4.4743 -1.2284 35 1 4.6491 -8.0098 -0.4512 36 1 2.9816 -7.7310 0.1056 37 1 2.7871 -10.9234 -1.7194 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131277576.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:11 Heat of formation + Delta-G solvation = -17.611034 kcal Electronic energy + Delta-G solvation = -19859.163786 eV Core-core repulsion = 16729.934019 eV Total energy + Delta-G solvation = -3129.229767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.57177 -39.16458 -34.93180 -33.80938 -33.01187 -32.34858 -31.72676 -27.84540 -26.68999 -26.02951 -24.50961 -22.50477 -22.07678 -21.13041 -18.59265 -17.74482 -16.78553 -16.44958 -16.26964 -16.03227 -15.25635 -14.69632 -14.40485 -14.09648 -13.78331 -13.52473 -13.24282 -13.09734 -13.04403 -12.70822 -12.27792 -12.10847 -12.00665 -11.88571 -11.79852 -11.63941 -11.22831 -10.91151 -10.62108 -10.56859 -10.17872 -9.90854 -9.65723 -9.05201 -8.87163 -8.45571 -7.74355 -7.18834 -6.06587 -4.11591 1.52838 1.57056 2.35069 2.50690 3.00028 3.27568 3.29918 3.36781 3.42128 3.83624 4.43342 4.56493 4.78372 4.88094 4.93826 5.05176 5.06692 5.28193 5.36456 5.42684 5.50283 5.51940 5.59510 5.66327 5.68718 5.84838 6.02967 6.04167 6.17056 6.20369 6.94415 6.95442 7.37643 7.45213 7.89147 8.19102 8.27316 8.82351 8.97734 9.53650 11.01592 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.004008 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.154299 B = 6983.696113 C = 7398.558848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.007 3.993 3 O -0.174 6.174 4 C -0.031 4.031 5 C -0.213 4.213 6 C -0.198 4.198 7 S -0.008 6.008 8 C -0.112 4.112 9 H 0.108 0.892 10 C -0.146 4.146 11 C 0.526 3.474 12 O -0.523 6.523 13 N -0.594 5.594 14 C 0.080 3.920 15 C 0.246 3.754 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.204 0.796 28 H 0.151 0.849 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.565 20.412 3.892 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 O -0.071 6.071 4 C -0.100 4.100 5 C -0.235 4.235 6 C -0.311 4.311 7 S 0.232 5.768 8 C -0.244 4.244 9 H 0.126 0.874 10 C -0.205 4.205 11 C 0.310 3.690 12 O -0.399 6.399 13 N -0.326 5.326 14 C -0.064 4.064 15 C 0.127 3.873 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.220 0.780 28 H 0.169 0.831 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.783 19.704 4.059 20.197 hybrid contribution 1.494 0.095 -1.077 1.845 sum 3.278 19.799 2.982 20.289 Atomic orbital electron populations 1.20316 0.84640 1.04191 1.03743 1.21989 0.93682 0.82400 1.07070 1.84071 1.16648 1.34502 1.71853 1.23888 0.84446 0.95704 1.05980 1.21820 0.96687 0.95057 1.09957 1.22349 0.96093 0.99855 1.12792 1.85854 1.08357 0.89910 1.92676 1.23661 0.99469 0.97896 1.03346 0.87435 1.22106 1.00592 1.02633 0.95124 1.19301 0.85280 0.85657 0.78802 1.90713 1.22276 1.77298 1.49643 1.48062 1.10437 1.10326 1.63749 1.21738 0.85105 0.99148 1.00418 1.19355 0.97403 0.72547 0.97967 1.21418 1.44142 0.93529 0.97611 0.92392 1.24928 0.95393 0.96047 0.97647 1.69933 1.48398 1.00684 1.34322 0.86485 0.78795 0.78054 0.84063 1.20626 1.21016 1.19804 0.89832 0.90460 0.88978 0.77958 0.83124 0.91045 0.90778 0.91081 0.93438 0.90414 0.92534 0.94741 0.93651 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.21 36.00 0.37 -0.33 16 2 C 0.01 0.09 7.35 -35.45 -0.26 -0.17 16 3 O -0.17 -2.03 10.66 4.91 0.05 -1.98 16 4 C -0.03 -0.31 12.08 29.41 0.36 0.05 16 5 C -0.21 -2.43 8.87 -39.56 -0.35 -2.78 16 6 C -0.20 -2.69 6.23 -39.38 -0.25 -2.94 16 7 S -0.01 -0.12 20.23 -107.50 -2.17 -2.30 16 8 C -0.11 -1.76 1.82 -27.88 -0.05 -1.81 16 9 H 0.11 1.52 6.23 -51.92 -0.32 1.19 16 10 C -0.15 -1.86 8.76 37.16 0.33 -1.54 16 11 C 0.53 11.08 6.85 -10.99 -0.08 11.01 16 12 O -0.52 -13.36 15.62 5.56 0.09 -13.27 16 13 N -0.59 -12.52 2.86 -182.95 -0.52 -13.04 16 14 C 0.08 1.23 9.56 59.85 0.57 1.81 16 15 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 16 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 17 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.93 7.80 -51.93 -0.41 0.53 16 27 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.15 1.48 6.26 -52.49 -0.33 1.16 16 29 H 0.07 0.78 5.14 -51.93 -0.27 0.51 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.81 6.94 -51.93 -0.36 0.45 16 32 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.06 0.72 5.94 -51.93 -0.31 0.41 16 35 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -34.18 323.38 -6.63 -40.81 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.85 Total: -2.22 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 0.19 Total: -3.96 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.21 Total: -38.85 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.14 Total: -15.25 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.17 Total: -2.30 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.18 -6.63 -40.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131277576.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.201 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds