Wall clock time and date at job start Fri Apr 10 2020 14:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34626 * 125.85141 * 2 1 4 4 C 1.34269 * 109.53806 * 180.17355 * 3 2 1 5 5 C 1.34488 * 108.57316 * 359.61653 * 4 3 2 6 6 C 1.35028 * 125.85312 * 179.75969 * 2 1 3 7 7 S 1.76195 * 126.63707 * 359.97438 * 6 2 1 8 8 C 1.81406 * 102.99765 * 180.02562 * 7 6 2 9 9 H 1.08999 * 109.47015 * 305.00374 * 8 7 6 10 10 C 1.53001 * 109.46981 * 65.00215 * 8 7 6 11 11 C 1.50700 * 109.47304 * 185.00246 * 8 7 6 12 12 O 1.21280 * 119.99622 * 340.00326 * 11 8 7 13 13 N 1.34767 * 120.00436 * 159.99997 * 11 8 7 14 14 C 1.46508 * 119.99848 * 0.02562 * 13 11 8 15 15 C 1.46500 * 120.00352 * 179.97438 * 13 11 8 16 16 C 1.50705 * 109.46905 * 90.00255 * 15 13 11 17 17 H 1.07994 * 119.99910 * 0.02562 * 16 15 13 18 18 C 1.37872 * 119.99772 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00221 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00121 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46925 * 89.99901 * 20 18 16 22 22 H 1.48493 * 109.47452 * 209.99796 * 20 18 16 23 23 H 1.48499 * 109.46884 * 330.00259 * 20 18 16 24 24 H 1.08997 * 109.47313 * 270.24452 * 1 2 3 25 25 H 1.09002 * 109.47367 * 30.23924 * 1 2 3 26 26 H 1.09001 * 109.47573 * 150.24164 * 1 2 3 27 27 H 1.08002 * 125.71736 * 179.89105 * 4 3 2 28 28 H 1.07996 * 126.56079 * 180.24933 * 5 4 3 29 29 H 1.08997 * 109.46827 * 300.00217 * 10 8 7 30 30 H 1.08999 * 109.47116 * 60.00220 * 10 8 7 31 31 H 1.09000 * 109.47204 * 179.97438 * 10 8 7 32 32 H 1.08997 * 109.47415 * 89.99575 * 14 13 11 33 33 H 1.09000 * 109.46883 * 210.00475 * 14 13 11 34 34 H 1.09002 * 109.46989 * 329.99632 * 14 13 11 35 35 H 1.09005 * 109.47163 * 210.00079 * 15 13 11 36 36 H 1.08998 * 109.47211 * 329.99940 * 15 13 11 37 37 H 0.97002 * 120.00026 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2954 1.0912 0.0000 4 6 3.5841 0.7140 -0.0038 5 6 3.6371 -0.6298 0.0022 6 6 2.2978 -1.0944 0.0046 7 16 1.7677 -2.7747 0.0123 8 6 3.3306 -3.6956 0.0166 9 1 3.9430 -3.3760 -0.8266 10 6 4.0794 -3.4233 1.3228 11 6 3.0450 -5.1706 -0.1005 12 8 1.9459 -5.5996 0.1806 13 7 4.0106 -6.0131 -0.5178 14 6 5.3384 -5.4949 -0.8570 15 6 3.7330 -7.4471 -0.6311 16 6 3.2200 -7.7515 -2.0151 17 1 3.1120 -6.9565 -2.7379 18 6 2.8886 -9.0451 -2.3582 19 7 3.0206 -10.0134 -1.4781 20 14 2.2521 -9.4225 -4.0734 21 1 3.3949 -9.7422 -4.9663 22 1 1.3298 -10.5848 -4.0145 23 1 1.5258 -8.2405 -4.6030 24 1 -0.3634 0.0044 1.0276 25 1 -0.3634 0.8878 -0.5175 26 1 -0.3634 -0.8921 -0.5101 27 1 4.4355 1.3785 -0.0064 28 1 4.5293 -1.2384 0.0049 29 1 4.2860 -2.3564 1.4075 30 1 3.4671 -3.7429 2.1660 31 1 5.0183 -3.9770 1.3256 32 1 5.9693 -5.5024 0.0318 33 1 5.7874 -6.1224 -1.6268 34 1 5.2461 -4.4743 -1.2284 35 1 4.6491 -8.0098 -0.4512 36 1 2.9816 -7.7310 0.1056 37 1 2.7871 -10.9234 -1.7194 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131277576.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:10 Heat of formation + Delta-G solvation = -39.610125 kcal Electronic energy + Delta-G solvation = -19860.117738 eV Core-core repulsion = 16729.934019 eV Total energy + Delta-G solvation = -3130.183719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.43014 -40.82997 -36.70746 -35.18447 -34.45071 -33.74550 -32.63419 -29.75694 -27.51676 -27.48074 -26.08988 -24.24875 -22.97304 -22.10959 -20.10185 -18.76228 -18.65730 -18.13581 -17.40068 -17.13828 -16.75468 -16.46568 -15.88244 -15.20926 -15.00686 -14.70657 -14.56563 -14.13708 -13.98985 -13.84027 -13.82963 -13.56761 -13.34412 -13.12487 -12.97658 -12.84882 -12.82432 -12.74805 -12.53820 -12.23258 -11.74478 -11.56540 -11.05450 -10.73447 -10.65510 -9.72969 -9.51322 -8.35134 -8.24716 -6.39442 0.33033 0.72215 1.35504 1.38880 1.40157 1.48617 1.49262 1.69339 2.18026 2.25255 2.40791 3.05335 3.46961 3.74228 3.80995 3.85119 3.99080 4.32176 4.37232 4.56129 4.59693 4.64624 4.69690 4.70569 4.71792 4.85459 4.90781 4.95665 5.09310 5.18978 5.25306 5.41013 5.50528 5.77194 6.02392 6.09974 6.58559 6.69923 7.20316 7.35524 8.82572 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.004008 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.154299 B = 6983.696113 C = 7398.558848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.001 4.001 3 O -0.179 6.179 4 C -0.015 4.015 5 C -0.232 4.232 6 C -0.212 4.212 7 S -0.065 6.065 8 C -0.090 4.090 9 H 0.130 0.870 10 C -0.139 4.139 11 C 0.516 3.484 12 O -0.581 6.581 13 N -0.599 5.599 14 C 0.073 3.927 15 C 0.260 3.740 16 C -0.545 4.545 17 H 0.052 0.948 18 C 0.010 3.990 19 N -0.927 5.927 20 Si 0.967 3.033 21 H -0.261 1.261 22 H -0.280 1.280 23 H -0.275 1.275 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.248 0.752 28 H 0.168 0.832 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.030 0.970 36 H -0.001 1.001 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 22.867 2.981 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 O -0.076 6.076 4 C -0.083 4.083 5 C -0.253 4.253 6 C -0.326 4.326 7 S 0.174 5.826 8 C -0.222 4.222 9 H 0.148 0.852 10 C -0.197 4.197 11 C 0.302 3.698 12 O -0.461 6.461 13 N -0.330 5.330 14 C -0.069 4.069 15 C 0.139 3.861 16 C -0.584 4.584 17 H 0.070 0.930 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.791 3.209 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.200 1.200 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.264 0.736 28 H 0.185 0.815 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.018 0.982 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.621 22.198 3.145 22.711 hybrid contribution 0.961 -0.595 -0.755 1.359 sum 4.582 21.603 2.390 22.213 Atomic orbital electron populations 1.20401 0.83504 1.04615 1.04563 1.22378 0.94701 0.82402 1.06386 1.84105 1.17582 1.34167 1.71750 1.24736 0.84543 0.95899 1.03134 1.22077 0.96146 0.96072 1.11043 1.22250 0.97741 0.97823 1.14748 1.86061 1.10015 0.93015 1.93513 1.23479 0.99475 0.93367 1.05865 0.85177 1.22113 1.00472 1.04544 0.92589 1.20190 0.84274 0.87895 0.77394 1.90677 1.24669 1.78832 1.51933 1.48051 1.12823 1.08548 1.63592 1.22079 0.82418 1.00493 1.01940 1.18822 0.95629 0.75897 0.95743 1.21679 1.44598 0.93714 0.98403 0.92999 1.25828 0.95389 0.95859 1.01836 1.70043 1.49082 1.01152 1.36365 0.85430 0.78648 0.77630 0.79210 1.18605 1.20532 1.19987 0.88815 0.88491 0.90034 0.73612 0.81484 0.88451 0.92488 0.89151 0.90260 0.90961 0.89200 0.95157 0.98245 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.21 71.23 0.73 -0.65 16 2 C 0.00 -0.01 7.35 24.95 0.18 0.17 16 3 O -0.18 -3.68 10.66 -5.34 -0.06 -3.74 16 4 C -0.02 -0.23 12.08 66.96 0.81 0.57 16 5 C -0.23 -4.53 8.87 22.28 0.20 -4.34 16 6 C -0.21 -5.47 6.23 22.40 0.14 -5.33 16 7 S -0.06 -2.12 20.23 -56.49 -1.14 -3.26 16 8 C -0.09 -2.75 1.82 29.85 0.05 -2.69 16 9 H 0.13 3.31 6.23 -2.39 -0.01 3.30 16 10 C -0.14 -3.24 8.76 71.98 0.63 -2.61 16 11 C 0.52 22.12 6.85 87.66 0.60 22.72 16 12 O -0.58 -31.24 15.62 -3.03 -0.05 -31.28 16 13 N -0.60 -25.40 2.86 -851.11 -2.43 -27.83 16 14 C 0.07 2.08 9.56 127.77 1.22 3.30 16 15 C 0.26 14.08 5.16 85.63 0.44 14.52 16 16 C -0.55 -31.71 9.39 25.60 0.24 -31.47 16 17 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 18 C 0.01 0.59 5.46 84.65 0.46 1.05 16 19 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 20 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.68 7.80 -2.39 -0.02 1.66 16 27 H 0.25 1.34 8.06 -2.91 -0.02 1.32 16 28 H 0.17 2.58 6.26 -2.91 -0.02 2.57 16 29 H 0.10 1.80 5.14 -2.39 -0.01 1.79 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.77 6.94 -2.39 -0.02 1.75 16 32 H 0.08 1.79 7.66 -2.39 -0.02 1.77 16 33 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 34 H 0.09 1.97 5.94 -2.39 -0.01 1.95 16 35 H 0.03 1.64 8.07 -2.38 -0.02 1.62 16 36 H 0.00 -0.04 7.42 -2.39 -0.02 -0.05 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -78.26 323.38 5.42 -72.84 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.08 Total: 6.65 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 5.71 Total: -4.77 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.15 Total: -83.72 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.10 Total: -35.03 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -1.14 Total: -3.26 kcal Total: -78.26 5.42 -72.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131277576.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.228 kcal (2) G-P(sol) polarization free energy of solvation -78.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds