Wall clock time and date at job start Fri Apr 10 2020 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99917 * 2 1 4 4 C 1.52999 * 109.47658 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46942 * 64.99490 * 4 3 2 6 6 C 1.46497 * 120.00532 * 270.00638 * 5 4 3 7 7 C 1.50706 * 109.46827 * 275.34476 * 6 5 4 8 8 H 1.07995 * 119.99957 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99616 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00249 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99703 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46910 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46842 * 120.00041 * 11 9 7 14 14 H 1.48500 * 109.47478 * 240.00019 * 11 9 7 15 15 C 1.34776 * 119.99585 * 90.00552 * 5 4 3 16 16 O 1.21643 * 120.00383 * 4.83175 * 15 5 4 17 17 C 1.47188 * 119.99910 * 184.83425 * 15 5 4 18 18 C 1.44424 * 123.46355 * 309.05502 * 17 15 5 19 19 C 1.32770 * 113.08728 * 180.02562 * 18 17 15 20 20 S 1.75501 * 110.57380 * 359.97438 * 19 18 17 21 21 C 1.36015 * 123.46206 * 129.09858 * 17 15 5 22 22 C 1.50700 * 124.58878 * 0.22455 * 21 17 15 23 23 H 1.08992 * 109.47119 * 300.00211 * 1 2 3 24 24 H 1.09004 * 109.46810 * 60.00527 * 1 2 3 25 25 H 1.08997 * 109.46531 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46976 * 59.99328 * 3 2 1 27 27 H 1.09000 * 109.47185 * 300.00219 * 3 2 1 28 28 H 1.09005 * 109.46927 * 305.00026 * 4 3 2 29 29 H 1.08998 * 109.47354 * 184.99885 * 4 3 2 30 30 H 1.08995 * 109.46934 * 35.33757 * 6 5 4 31 31 H 1.09000 * 109.47312 * 155.34495 * 6 5 4 32 32 H 0.97000 * 119.99737 * 179.97438 * 10 9 7 33 33 H 1.08004 * 123.45451 * 359.97438 * 18 17 15 34 34 H 1.07999 * 124.70940 * 179.97438 * 19 18 17 35 35 H 1.09005 * 109.46648 * 179.72621 * 22 21 17 36 36 H 1.08990 * 109.47354 * 299.72441 * 22 21 17 37 37 H 1.08996 * 109.46892 * 59.72886 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5641 -1.2508 6 6 4.1063 -0.8924 -1.3403 7 6 5.4567 -1.3095 -0.8171 8 1 6.1492 -0.5642 -0.4547 9 6 5.8080 -2.6427 -0.8012 10 7 4.9646 -3.5503 -1.2421 11 14 7.4821 -3.1597 -0.1534 12 1 8.2379 -1.9573 0.2804 13 1 7.3045 -4.0757 1.0019 14 1 8.2345 -3.8572 -1.2270 15 6 4.2634 1.3330 -2.3199 16 8 4.2410 2.5452 -2.2209 17 6 4.6035 0.7061 -3.6074 18 6 5.6066 -0.3229 -3.7517 19 6 5.7463 -0.7420 -5.0038 20 16 4.6437 0.1144 -6.0674 21 6 4.0061 1.0368 -4.7837 22 6 2.9298 2.0811 -4.9327 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 1.6885 1.8465 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5687 0.8427 29 1 3.9784 2.1767 0.0902 30 1 3.3246 -1.3640 -0.7449 31 1 4.0080 -1.2028 -2.3805 32 1 5.2119 -4.4882 -1.2312 33 1 6.1845 -0.7111 -2.9260 34 1 6.4417 -1.5039 -5.3233 35 1 2.6316 2.1487 -5.9789 36 1 2.0677 1.8034 -4.3264 37 1 3.3118 3.0464 -4.6006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590629642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:32 Heat of formation + Delta-G solvation = -52.604581 kcal Electronic energy + Delta-G solvation = -20898.752115 eV Core-core repulsion = 17768.004914 eV Total energy + Delta-G solvation = -3130.747201 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.44042 -37.51367 -36.24504 -34.90562 -32.61200 -31.52525 -29.95007 -27.20599 -26.64680 -25.70607 -23.56315 -22.85372 -21.86228 -20.05650 -17.83172 -16.66334 -16.50357 -16.26430 -15.94952 -15.45584 -15.14201 -14.67166 -14.38666 -13.89355 -13.64665 -13.31819 -12.96910 -12.62354 -12.35744 -12.14512 -11.86793 -11.77103 -11.65516 -11.49683 -11.31216 -11.06513 -10.91300 -10.86302 -10.60132 -10.35381 -10.13562 -9.67890 -9.38845 -9.08986 -8.52404 -8.19703 -7.80692 -7.63988 -6.13342 -4.19972 1.43889 2.06137 2.43498 2.87667 3.22304 3.31639 3.35503 3.71948 4.03505 4.19344 4.37995 5.16921 5.19711 5.37930 5.39500 5.51075 5.53383 5.65361 5.66268 5.72272 5.82629 5.84748 5.87776 6.11271 6.21189 6.31585 6.39743 6.60241 6.81396 6.89133 7.09766 7.41641 7.50209 7.64108 7.83138 8.13661 8.39772 8.83551 9.02888 9.45216 10.92650 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.009031 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.492252 B = 3099.534023 C = 4895.205935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.049 3.951 4 C 0.121 3.879 5 N -0.579 5.579 6 C 0.235 3.765 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.068 3.932 10 N -0.883 5.883 11 Si 0.889 3.111 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.578 3.422 16 O -0.574 6.574 17 C -0.138 4.138 18 C -0.073 4.073 19 C -0.242 4.242 20 S 0.121 5.879 21 C -0.173 4.173 22 C -0.078 4.078 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 6.291 -4.354 9.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.029 4.029 4 C -0.003 4.003 5 N -0.307 5.307 6 C 0.116 3.884 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.520 5.520 11 Si 0.717 3.283 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.365 3.635 16 O -0.456 6.456 17 C -0.155 4.155 18 C -0.102 4.102 19 C -0.376 4.376 20 S 0.386 5.614 21 C -0.292 4.292 22 C -0.136 4.136 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.193 0.807 34 H 0.179 0.821 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.396 6.423 -5.848 10.226 hybrid contribution 0.951 -0.414 1.985 2.239 sum -4.445 6.009 -3.863 8.414 Atomic orbital electron populations 1.22678 0.82242 1.02392 0.99103 1.88077 1.18592 1.27371 1.95176 1.23027 0.95301 0.84952 0.99647 1.21346 0.90988 0.99717 0.88250 1.48084 1.62833 1.10138 1.09694 1.19608 0.97347 0.72534 0.98931 1.21531 1.00887 0.92386 1.42778 0.92107 1.24916 0.97191 0.96383 0.95106 1.69954 1.35149 1.01314 1.45632 0.86575 0.84109 0.78801 0.78840 1.19623 1.20857 1.20837 1.17680 0.76468 0.85867 0.83482 1.90669 1.55705 1.14032 1.85220 1.20152 1.01111 1.00710 0.93557 1.21940 0.96917 0.93430 0.97868 1.25255 1.07287 1.08314 0.96755 1.82549 1.34459 1.33276 1.11157 1.24118 1.04251 1.04077 0.96780 1.20290 0.95177 0.96624 1.01539 0.94721 0.94722 0.89876 0.93171 0.93577 0.89239 0.89340 0.93402 0.93906 0.92657 0.80723 0.82089 0.91898 0.91150 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.81 9.45 -35.23 -0.33 -7.14 16 3 C 0.05 0.81 6.28 37.16 0.23 1.04 16 4 C 0.12 2.28 5.87 -4.04 -0.02 2.26 16 5 N -0.58 -12.68 2.42 -176.41 -0.43 -13.11 16 6 C 0.24 5.77 4.55 -5.19 -0.02 5.74 16 7 C -0.54 -13.82 7.16 -34.44 -0.25 -14.07 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.88 -24.23 13.29 55.43 0.74 -23.49 16 11 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.58 12.77 7.02 -12.63 -0.09 12.68 16 16 O -0.57 -13.19 15.88 5.24 0.08 -13.11 16 17 C -0.14 -2.86 4.83 -104.63 -0.51 -3.37 16 18 C -0.07 -1.51 8.18 -39.02 -0.32 -1.83 16 19 C -0.24 -4.27 11.12 28.86 0.32 -3.95 16 20 S 0.12 1.88 22.95 -107.50 -2.47 -0.59 16 21 C -0.17 -3.11 6.34 -35.11 -0.22 -3.33 16 22 C -0.08 -1.18 9.54 36.01 0.34 -0.84 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.71 8.07 -51.93 -0.42 1.29 16 29 H 0.09 1.59 7.36 -51.93 -0.38 1.21 16 30 H 0.05 1.28 7.04 -51.93 -0.37 0.91 16 31 H 0.04 1.12 5.57 -51.93 -0.29 0.83 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.18 3.96 5.63 -52.48 -0.30 3.67 16 34 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 35 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.33 7.77 -51.93 -0.40 0.92 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -29.54 324.79 -7.13 -36.67 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.08 Total: 3.02 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 0.48 Total: -2.44 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.31 Total: -36.60 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.25 Total: -20.25 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.47 Total: -0.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.54 -7.13 -36.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.930 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds