Wall clock time and date at job start Fri Apr 10 2020 14:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38677 * 120.78761 * 2 1 4 4 C 1.38184 * 119.16194 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.61889 * 180.02562 * 4 3 2 6 6 N 1.31888 * 120.76199 * 359.97438 * 4 3 2 7 7 C 1.31854 * 121.72838 * 0.02562 * 6 4 3 8 8 S 1.76201 * 119.61442 * 179.97438 * 7 6 4 9 9 O 1.42104 * 102.99502 * 203.85312 * 8 7 6 10 10 C 1.81399 * 103.00016 * 90.00317 * 8 7 6 11 11 C 1.52999 * 109.46986 * 179.97438 * 10 8 7 12 12 O 1.42899 * 109.46883 * 179.97438 * 11 10 8 13 13 C 1.42905 * 114.00077 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47354 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00161 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99855 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00208 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99788 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47149 * 90.00130 * 18 16 14 20 20 H 1.48497 * 109.47315 * 209.99928 * 18 16 14 21 21 H 1.48500 * 109.47165 * 330.00189 * 18 16 14 22 22 C 1.38215 * 120.76332 * 0.02562 * 7 6 4 23 23 H 1.09000 * 109.47097 * 270.02223 * 1 2 3 24 24 H 1.09000 * 109.47042 * 30.02585 * 1 2 3 25 25 H 1.09004 * 109.46963 * 150.02134 * 1 2 3 26 26 H 1.07996 * 120.42283 * 359.95244 * 3 2 1 27 27 H 1.08999 * 109.47373 * 270.00116 * 5 4 3 28 28 H 1.09011 * 109.46908 * 29.99705 * 5 4 3 29 29 H 1.09003 * 109.47334 * 149.99228 * 5 4 3 30 30 H 1.08996 * 109.46971 * 299.99675 * 10 8 7 31 31 H 1.09007 * 109.46895 * 59.99925 * 10 8 7 32 32 H 1.08996 * 109.47536 * 299.99985 * 11 10 8 33 33 H 1.09007 * 109.46829 * 60.00540 * 11 10 8 34 34 H 1.09000 * 109.47070 * 300.01109 * 13 12 11 35 35 H 1.09005 * 109.47024 * 60.00393 * 13 12 11 36 36 H 0.96994 * 120.00262 * 179.97438 * 17 16 14 37 37 H 1.08005 * 120.42066 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 6 4.3798 2.4405 0.0011 6 7 4.2403 0.0001 0.0016 7 6 3.5983 -1.1516 0.0016 8 16 4.5124 -2.6579 0.0023 9 8 3.5957 -3.5882 -0.5578 10 6 4.7233 -3.0064 1.7700 11 6 5.5114 -4.3064 1.9430 12 8 5.6781 -4.5806 3.3355 13 6 6.4057 -5.7797 3.6087 14 6 6.5203 -5.9692 5.0993 15 1 6.0810 -5.2465 5.7709 16 6 7.1860 -7.0653 5.6057 17 7 7.7214 -7.9452 4.7880 18 14 7.3274 -7.3006 7.4535 19 1 6.1683 -8.0900 7.9421 20 1 8.5860 -8.0242 7.7655 21 1 7.3401 -5.9745 8.1218 22 6 2.2167 -1.1908 0.0000 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6967 2.1378 -0.0008 27 1 4.5686 2.7514 -1.0264 28 1 3.8070 3.2127 0.5149 29 1 5.3289 2.2895 0.5154 30 1 5.2667 -2.1865 2.2396 31 1 3.7449 -3.1099 2.2392 32 1 4.9677 -5.1261 1.4734 33 1 6.4899 -4.2033 1.4737 34 1 5.8808 -6.6303 3.1739 35 1 7.4026 -5.7070 3.1737 36 1 8.1900 -8.7161 5.1443 37 1 1.6965 -2.1374 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591247716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:01 Heat of formation + Delta-G solvation = -64.576401 kcal Electronic energy + Delta-G solvation = -18933.164877 eV Core-core repulsion = 15801.898539 eV Total energy + Delta-G solvation = -3131.266338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50609 -36.81747 -35.89444 -34.43966 -32.99930 -32.84831 -30.90278 -28.36177 -27.79782 -27.01589 -23.99423 -22.61630 -22.16074 -21.48198 -18.02032 -16.88664 -16.74411 -16.42168 -16.11706 -15.52504 -15.35757 -15.05644 -14.45313 -14.22224 -13.99262 -13.68529 -13.39141 -13.27187 -13.09116 -12.92730 -12.59986 -12.53411 -12.19339 -12.01473 -11.90933 -11.11585 -10.94223 -10.74156 -10.70011 -10.64719 -10.08686 -9.87966 -9.73661 -9.35687 -9.13035 -8.86171 -8.39772 -8.20447 -6.11435 -4.13490 0.45592 0.91884 1.54773 2.54104 3.30419 3.33904 3.35258 3.40658 3.67273 4.17381 4.26906 4.35662 4.67748 4.69295 4.84706 4.91360 5.02818 5.14501 5.22014 5.24845 5.24949 5.30374 5.35671 5.48690 5.60811 5.68210 5.75010 5.81183 5.91625 6.10514 6.23982 6.32528 7.08234 7.41088 7.55688 7.78320 8.13324 8.53908 8.99153 9.51253 11.00104 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.026093 B = 0.002940 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.845850 B = 9520.462749 C = 9661.326531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.052 4.052 3 C -0.145 4.145 4 C 0.114 3.886 5 C -0.102 4.102 6 N -0.419 5.419 7 C -0.220 4.220 8 S 1.362 4.638 9 O -0.845 6.845 10 C -0.445 4.445 11 C 0.084 3.916 12 O -0.392 6.392 13 C 0.192 3.808 14 C -0.517 4.517 15 H 0.066 0.934 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.909 3.091 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.124 4.124 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.136 0.864 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.006 0.994 35 H 0.010 0.990 36 H 0.265 0.735 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 20.841 -13.179 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.061 4.061 3 C -0.165 4.165 4 C -0.027 4.027 5 C -0.160 4.160 6 N -0.130 5.130 7 C -0.451 4.451 8 S 1.556 4.444 9 O -0.840 6.840 10 C -0.583 4.583 11 C 0.005 3.995 12 O -0.312 6.312 13 C 0.118 3.882 14 C -0.555 4.555 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.736 3.264 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.145 4.145 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.154 0.846 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.143 0.857 31 H 0.110 0.890 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.024 0.976 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.508 20.256 -13.818 25.644 hybrid contribution -2.866 -0.448 1.885 3.460 sum -10.374 19.807 -11.933 25.345 Atomic orbital electron populations 1.20855 0.89922 1.03512 1.03153 1.20445 0.97039 0.92995 0.95601 1.22000 0.95052 0.98627 1.00796 1.21549 0.91359 0.94562 0.95207 1.20715 1.00513 0.91501 1.03258 1.67552 1.39677 0.96683 1.09064 1.30266 1.00143 1.10629 1.04021 1.70259 1.07274 0.79770 0.87056 1.93054 1.65169 1.56921 1.68844 1.27790 1.06655 1.05049 1.18758 1.21677 0.97446 0.92997 0.87337 1.87893 1.77323 1.46444 1.19558 1.20271 0.90191 0.80732 0.97018 1.21051 1.35264 1.08330 0.90872 0.91549 1.24952 0.95196 0.95386 0.98944 1.69955 1.36411 1.12531 1.34768 0.86321 0.77511 0.78375 0.84189 1.20487 1.20999 1.19608 1.22095 0.95043 0.99464 0.97882 0.90283 0.90839 0.90792 0.84589 0.90235 0.90778 0.89856 0.85700 0.88960 0.94040 0.93016 0.97568 0.97245 0.92582 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.06 36.01 0.36 -0.52 16 2 C -0.05 -0.54 5.92 -104.32 -0.62 -1.16 16 3 C -0.14 -1.34 9.45 -39.44 -0.37 -1.71 16 4 C 0.11 1.15 6.78 -82.59 -0.56 0.59 16 5 C -0.10 -0.67 10.17 36.00 0.37 -0.30 16 6 N -0.42 -5.00 10.21 -8.69 -0.09 -5.09 16 7 C -0.22 -2.84 6.53 -17.55 -0.11 -2.95 16 8 S 1.36 17.15 13.74 -107.50 -1.48 15.67 16 9 O -0.84 -14.65 16.88 -35.23 -0.59 -15.25 16 10 C -0.45 -6.79 6.25 37.16 0.23 -6.56 16 11 C 0.08 1.60 5.95 37.16 0.22 1.82 16 12 O -0.39 -9.77 10.33 -35.23 -0.36 -10.14 16 13 C 0.19 5.38 5.69 36.00 0.20 5.59 16 14 C -0.52 -15.49 9.43 -34.44 -0.32 -15.81 16 15 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 18 Si 0.91 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.12 -1.60 9.18 -39.45 -0.36 -1.96 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 25 H 0.07 0.55 8.10 -51.93 -0.42 0.12 16 26 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.35 8.08 -51.92 -0.42 -0.07 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.09 1.53 8.14 -51.92 -0.42 1.10 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.14 1.89 7.45 -52.48 -0.39 1.50 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -37.17 335.36 -8.24 -45.41 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -5.42 Total: -4.91 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.06 Total: -21.42 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.65 Total: -31.41 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.96 Total: -25.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 17.15 SS G_CDS: -1.48 Total: 15.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.17 -8.24 -45.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591247716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.164 kcal (2) G-P(sol) polarization free energy of solvation -37.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds