Wall clock time and date at job start Fri Apr 10 2020 14:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76190 * 102.99855 * 2 1 4 4 C 1.35126 * 125.52740 * 180.02562 * 3 2 1 5 5 C 1.47059 * 105.88281 * 179.97438 * 4 3 2 6 6 C 1.47383 * 127.14819 * 179.97438 * 5 4 3 7 7 O 1.21615 * 120.00211 * 169.37119 * 6 5 4 8 8 N 1.34778 * 119.99757 * 349.37537 * 6 5 4 9 9 C 1.46504 * 120.00102 * 1.01106 * 8 6 5 10 10 C 1.46503 * 120.00257 * 181.01291 * 8 6 5 11 11 H 1.09005 * 109.46453 * 359.97438 * 10 8 6 12 12 C 1.52996 * 109.47243 * 240.00262 * 10 8 6 13 13 C 1.50692 * 109.47319 * 119.99761 * 10 8 6 14 14 H 1.07997 * 120.00268 * 34.85083 * 13 10 8 15 15 C 1.37884 * 120.00065 * 214.85153 * 13 10 8 16 16 N 1.31516 * 119.99997 * 184.74151 * 15 13 10 17 17 Si 1.86793 * 119.99827 * 4.73931 * 15 13 10 18 18 H 1.48501 * 109.47348 * 94.69510 * 17 15 13 19 19 H 1.48504 * 109.47141 * 214.69505 * 17 15 13 20 20 H 1.48495 * 109.47539 * 334.69339 * 17 15 13 21 21 C 1.36333 * 105.70952 * 0.24006 * 5 4 3 22 22 C 1.50694 * 125.71827 * 179.75129 * 21 5 4 23 23 O 1.33950 * 108.56122 * 359.60943 * 21 5 4 24 24 H 1.08994 * 109.47112 * 299.99944 * 1 2 3 25 25 H 1.08998 * 109.47180 * 60.00112 * 1 2 3 26 26 H 1.09004 * 109.47228 * 179.97438 * 1 2 3 27 27 H 1.07996 * 127.06070 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.46738 * 83.29548 * 9 8 6 29 29 H 1.08998 * 109.47211 * 203.29161 * 9 8 6 30 30 H 1.08996 * 109.46844 * 323.29831 * 9 8 6 31 31 H 1.08997 * 109.47578 * 54.97761 * 12 10 8 32 32 H 1.08998 * 109.47474 * 174.97708 * 12 10 8 33 33 H 1.09005 * 109.47181 * 294.97632 * 12 10 8 34 34 H 0.96997 * 120.00129 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.46743 * 90.00541 * 22 21 5 36 36 H 1.09000 * 109.47171 * 210.00058 * 22 21 5 37 37 H 1.09002 * 109.47511 * 330.00492 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.4585 2.2345 -0.0005 5 6 3.2883 3.6952 -0.0009 6 6 4.3521 4.7152 -0.0010 7 8 4.0747 5.8832 -0.1956 8 7 5.6325 4.3535 0.2146 9 6 5.9696 2.9437 0.4269 10 6 6.6871 5.3701 0.2366 11 1 6.2485 6.3524 0.0607 12 6 7.7115 5.0661 -0.8584 13 6 7.3693 5.3573 1.5802 14 1 7.5013 4.4254 2.1099 15 6 7.8249 6.5352 2.1334 16 7 8.5021 6.5137 3.2605 17 14 7.4802 8.1616 1.2818 18 1 6.2544 8.7715 1.8568 19 1 8.6305 9.0791 1.4825 20 1 7.2817 7.9274 -0.1711 21 6 1.9420 3.9100 0.0049 22 6 1.2660 5.2567 0.0121 23 8 1.3209 2.7232 -0.0001 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 4.3899 1.6878 -0.0013 28 1 6.0730 2.4457 -0.5372 29 1 6.9092 2.8733 0.9748 30 1 5.1773 2.4632 1.0008 31 1 7.2035 4.9873 -1.8196 32 1 8.4470 5.8694 -0.9012 33 1 8.2139 4.1250 -0.6348 34 1 8.8223 7.3424 3.6499 35 1 1.0991 5.5850 -1.0139 36 1 0.3095 5.1804 0.5293 37 1 1.9003 5.9790 0.5260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597146107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:07 Heat of formation + Delta-G solvation = -4.213961 kcal Electronic energy + Delta-G solvation = -20410.980831 eV Core-core repulsion = 17282.332005 eV Total energy + Delta-G solvation = -3128.648826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.44537 -38.92994 -35.48697 -33.42321 -32.41354 -31.77176 -30.12922 -29.31924 -27.08528 -26.25052 -25.24844 -23.28095 -21.67762 -20.04740 -19.02947 -17.42350 -17.02642 -16.47695 -16.01758 -15.51779 -15.38855 -14.53273 -14.28292 -13.94005 -13.86175 -13.56404 -13.16016 -12.95089 -12.94529 -12.69939 -12.50789 -12.31296 -12.25499 -11.64515 -11.47095 -11.08120 -11.01518 -10.92025 -10.73860 -10.44810 -10.01829 -9.71648 -9.32252 -9.21023 -9.07771 -8.59162 -7.70693 -7.41833 -6.16010 -4.18050 1.02952 1.48370 1.67694 2.04500 3.29849 3.32150 3.39553 3.46308 3.79491 3.97174 4.39217 4.73291 4.76721 4.84620 5.00317 5.20280 5.25799 5.34713 5.40866 5.58503 5.63867 5.75629 5.81742 5.96247 6.14954 6.26945 6.37162 6.38849 6.43566 6.60752 6.91995 6.95272 7.12899 7.49621 7.65140 8.16136 8.50917 8.85362 8.95358 9.46474 10.95864 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.004602 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.005067 B = 6082.441004 C = 6585.760101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.028 6.028 3 C -0.045 4.045 4 C -0.157 4.157 5 C -0.211 4.211 6 C 0.576 3.424 7 O -0.557 6.557 8 N -0.576 5.576 9 C 0.067 3.933 10 C 0.220 3.780 11 H 0.069 0.931 12 C -0.146 4.146 13 C -0.525 4.525 14 H 0.078 0.922 15 C 0.079 3.921 16 N -0.892 5.892 17 Si 0.874 3.126 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.259 1.259 21 C 0.068 3.932 22 C -0.074 4.074 23 O -0.177 6.177 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.178 0.822 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.266 0.734 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 -11.749 -7.371 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.209 5.791 3 C -0.203 4.203 4 C -0.184 4.184 5 C -0.217 4.217 6 C 0.365 3.635 7 O -0.439 6.439 8 N -0.306 5.306 9 C -0.076 4.076 10 C 0.120 3.880 11 H 0.087 0.913 12 C -0.205 4.205 13 C -0.563 4.563 14 H 0.096 0.904 15 C -0.125 4.125 16 N -0.528 5.528 17 Si 0.701 3.299 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.184 1.184 21 C 0.012 3.988 22 C -0.131 4.131 23 O -0.076 6.076 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.195 0.805 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.442 -12.087 -7.323 20.206 hybrid contribution -0.700 1.705 -0.213 1.855 sum -15.142 -10.382 -7.536 19.846 Atomic orbital electron populations 1.23591 0.94680 1.07069 1.06555 1.85689 1.06441 0.93069 1.93913 1.23962 0.90744 0.92117 1.13465 1.23449 0.96990 0.92551 1.05380 1.21370 0.93715 0.93325 1.13280 1.17183 0.82166 0.86687 0.77495 1.90694 1.82365 1.18639 1.52169 1.48108 1.06580 1.08455 1.67409 1.22239 1.02904 0.82532 0.99934 1.19443 0.84282 0.88775 0.95541 0.91332 1.22207 0.99620 1.01497 0.97127 1.21131 1.37228 0.95875 1.02032 0.90368 1.24958 0.94042 0.98983 0.94475 1.69895 1.36111 1.27911 1.18924 0.86879 0.78116 0.83795 0.81136 1.19919 1.21271 1.18359 1.22806 0.90800 0.85893 0.99337 1.20538 1.00563 0.87743 1.04210 1.83858 1.36939 1.13610 1.73159 0.89390 0.89451 0.87181 0.80462 0.93688 0.89922 0.90979 0.95474 0.92629 0.93171 0.92421 0.89467 0.90891 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.45 101.05 1.06 -0.03 16 2 S -0.03 -0.29 22.74 -107.50 -2.44 -2.73 16 3 C -0.04 -0.62 7.32 29.63 0.22 -0.40 16 4 C -0.16 -2.39 8.82 -37.11 -0.33 -2.71 16 5 C -0.21 -3.79 6.08 -103.29 -0.63 -4.42 16 6 C 0.58 12.48 7.65 -12.54 -0.10 12.38 16 7 O -0.56 -13.42 14.34 5.26 0.08 -13.34 16 8 N -0.58 -12.52 2.75 -176.55 -0.49 -13.00 16 9 C 0.07 1.17 7.83 59.85 0.47 1.64 16 10 C 0.22 5.38 2.26 -69.09 -0.16 5.22 16 11 H 0.07 1.83 3.84 -51.93 -0.20 1.63 16 12 C -0.15 -3.12 9.10 37.16 0.34 -2.78 16 13 C -0.52 -14.50 8.69 -34.44 -0.30 -14.80 16 14 H 0.08 2.29 6.92 -52.49 -0.36 1.92 16 15 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 16 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 17 Si 0.87 22.12 27.30 -169.99 -4.64 17.48 16 18 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.26 -6.37 6.38 56.52 0.36 -6.01 16 21 C 0.07 1.07 7.37 -35.00 -0.26 0.81 16 22 C -0.07 -0.99 9.79 36.00 0.35 -0.64 16 23 O -0.18 -2.57 10.19 6.61 0.07 -2.51 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.11 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.18 2.39 4.91 -52.49 -0.26 2.13 16 28 H 0.04 0.67 7.67 -51.93 -0.40 0.27 16 29 H 0.08 1.52 6.65 -51.93 -0.35 1.17 16 30 H 0.07 1.15 4.82 -51.93 -0.25 0.90 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 34 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.11 1.69 6.75 -51.93 -0.35 1.34 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -32.72 317.39 -6.01 -38.73 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.71 Total: 0.20 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 0.57 Total: -3.56 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.29 Total: -39.05 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.14 Total: -15.85 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.64 Total: 17.48 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -2.44 Total: -2.73 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.72 -6.01 -38.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.513 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds