Wall clock time and date at job start Fri Apr 10 2020 14:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76190 * 102.99855 * 2 1 4 4 C 1.35126 * 125.52740 * 180.02562 * 3 2 1 5 5 C 1.47059 * 105.88281 * 179.97438 * 4 3 2 6 6 C 1.47383 * 127.14819 * 179.97438 * 5 4 3 7 7 O 1.21615 * 120.00211 * 169.37119 * 6 5 4 8 8 N 1.34778 * 119.99757 * 349.37537 * 6 5 4 9 9 C 1.46504 * 120.00102 * 1.01106 * 8 6 5 10 10 C 1.46503 * 120.00257 * 181.01291 * 8 6 5 11 11 H 1.09005 * 109.46453 * 359.97438 * 10 8 6 12 12 C 1.52996 * 109.47243 * 240.00262 * 10 8 6 13 13 C 1.50692 * 109.47319 * 119.99761 * 10 8 6 14 14 H 1.07997 * 120.00268 * 34.85083 * 13 10 8 15 15 C 1.37884 * 120.00065 * 214.85153 * 13 10 8 16 16 N 1.31516 * 119.99997 * 184.74151 * 15 13 10 17 17 Si 1.86793 * 119.99827 * 4.73931 * 15 13 10 18 18 H 1.48501 * 109.47348 * 94.69510 * 17 15 13 19 19 H 1.48504 * 109.47141 * 214.69505 * 17 15 13 20 20 H 1.48495 * 109.47539 * 334.69339 * 17 15 13 21 21 C 1.36333 * 105.70952 * 0.24006 * 5 4 3 22 22 C 1.50694 * 125.71827 * 179.75129 * 21 5 4 23 23 O 1.33950 * 108.56122 * 359.60943 * 21 5 4 24 24 H 1.08994 * 109.47112 * 299.99944 * 1 2 3 25 25 H 1.08998 * 109.47180 * 60.00112 * 1 2 3 26 26 H 1.09004 * 109.47228 * 179.97438 * 1 2 3 27 27 H 1.07996 * 127.06070 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.46738 * 83.29548 * 9 8 6 29 29 H 1.08998 * 109.47211 * 203.29161 * 9 8 6 30 30 H 1.08996 * 109.46844 * 323.29831 * 9 8 6 31 31 H 1.08997 * 109.47578 * 54.97761 * 12 10 8 32 32 H 1.08998 * 109.47474 * 174.97708 * 12 10 8 33 33 H 1.09005 * 109.47181 * 294.97632 * 12 10 8 34 34 H 0.96997 * 120.00129 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.46743 * 90.00541 * 22 21 5 36 36 H 1.09000 * 109.47171 * 210.00058 * 22 21 5 37 37 H 1.09002 * 109.47511 * 330.00492 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.4585 2.2345 -0.0005 5 6 3.2883 3.6952 -0.0009 6 6 4.3521 4.7152 -0.0010 7 8 4.0747 5.8832 -0.1956 8 7 5.6325 4.3535 0.2146 9 6 5.9696 2.9437 0.4269 10 6 6.6871 5.3701 0.2366 11 1 6.2485 6.3524 0.0607 12 6 7.7115 5.0661 -0.8584 13 6 7.3693 5.3573 1.5802 14 1 7.5013 4.4254 2.1099 15 6 7.8249 6.5352 2.1334 16 7 8.5021 6.5137 3.2605 17 14 7.4802 8.1616 1.2818 18 1 6.2544 8.7715 1.8568 19 1 8.6305 9.0791 1.4825 20 1 7.2817 7.9274 -0.1711 21 6 1.9420 3.9100 0.0049 22 6 1.2660 5.2567 0.0121 23 8 1.3209 2.7232 -0.0001 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 4.3899 1.6878 -0.0013 28 1 6.0730 2.4457 -0.5372 29 1 6.9092 2.8733 0.9748 30 1 5.1773 2.4632 1.0008 31 1 7.2035 4.9873 -1.8196 32 1 8.4470 5.8694 -0.9012 33 1 8.2139 4.1250 -0.6348 34 1 8.8223 7.3424 3.6499 35 1 1.0991 5.5850 -1.0139 36 1 0.3095 5.1804 0.5293 37 1 1.9003 5.9790 0.5260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597146107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:06 Heat of formation + Delta-G solvation = -24.981593 kcal Electronic energy + Delta-G solvation = -20411.881383 eV Core-core repulsion = 17282.332005 eV Total energy + Delta-G solvation = -3129.549378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.62072 -40.58846 -37.24588 -35.04876 -34.11924 -33.00155 -31.86159 -29.89047 -28.37222 -27.64247 -27.27366 -24.76477 -22.98831 -21.60256 -20.36795 -19.26438 -18.61345 -17.73453 -17.51125 -17.04214 -16.59140 -16.16400 -15.76955 -15.29068 -14.73511 -14.57579 -14.52185 -14.40063 -14.36708 -14.10125 -14.01790 -13.75422 -13.55617 -13.21413 -13.03263 -12.69528 -12.67769 -12.41286 -12.27348 -11.76774 -11.74115 -11.28569 -11.11772 -10.82946 -10.77945 -10.40700 -9.38118 -8.37951 -8.37074 -6.41439 0.08518 0.24460 0.81316 0.93874 1.27563 1.33850 1.43733 2.10551 2.28044 2.28182 2.42738 3.04583 3.65469 3.73200 3.94144 4.23539 4.28006 4.30527 4.36451 4.45313 4.54796 4.58092 4.60025 4.66136 4.73544 4.79830 4.84807 4.94074 5.05195 5.12540 5.17853 5.33463 5.52947 5.74506 5.80724 6.15967 6.63663 6.70618 7.21167 7.32766 8.78286 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.004602 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.005067 B = 6082.441004 C = 6585.760101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.019 6.019 3 C -0.042 4.042 4 C -0.170 4.170 5 C -0.244 4.244 6 C 0.569 3.431 7 O -0.592 6.592 8 N -0.587 5.587 9 C 0.067 3.933 10 C 0.220 3.780 11 H 0.047 0.953 12 C -0.138 4.138 13 C -0.521 4.521 14 H 0.052 0.948 15 C 0.029 3.971 16 N -0.934 5.934 17 Si 0.926 3.074 18 H -0.283 1.283 19 H -0.274 1.274 20 H -0.249 1.249 21 C 0.073 3.927 22 C -0.073 4.073 23 O -0.170 6.170 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.139 0.861 27 H 0.192 0.808 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.269 0.731 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.660 -13.331 -8.763 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.217 5.783 3 C -0.200 4.200 4 C -0.198 4.198 5 C -0.250 4.250 6 C 0.360 3.640 7 O -0.476 6.476 8 N -0.316 5.316 9 C -0.075 4.075 10 C 0.118 3.882 11 H 0.065 0.935 12 C -0.197 4.197 13 C -0.559 4.559 14 H 0.070 0.930 15 C -0.171 4.171 16 N -0.573 5.573 17 Si 0.751 3.249 18 H -0.209 1.209 19 H -0.199 1.199 20 H -0.173 1.173 21 C 0.016 3.984 22 C -0.129 4.129 23 O -0.068 6.068 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.157 0.843 27 H 0.208 0.792 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.332 -13.709 -8.728 23.040 hybrid contribution -0.249 2.011 0.236 2.040 sum -16.580 -11.698 -8.492 21.997 Atomic orbital electron populations 1.23768 0.91813 1.09061 1.06926 1.85757 1.09537 0.89688 1.93281 1.24547 0.90437 0.93610 1.11378 1.23503 0.98309 0.91289 1.06655 1.21158 0.93553 0.93975 1.16279 1.17670 0.82649 0.87062 0.76643 1.90655 1.82927 1.20298 1.53747 1.48059 1.06311 1.09517 1.67693 1.22430 1.02641 0.80630 1.01765 1.19252 0.85240 0.89003 0.94690 0.93516 1.22070 0.98783 1.01993 0.96831 1.21347 1.36618 0.94740 1.03238 0.92968 1.25641 0.94194 1.02090 0.95150 1.69995 1.37905 1.28821 1.20591 0.86041 0.77768 0.80365 0.80687 1.20878 1.19916 1.17268 1.23146 0.90453 0.87029 0.97740 1.20583 1.01236 0.85930 1.05177 1.83890 1.36770 1.13331 1.72769 0.89141 0.88952 0.84308 0.79168 0.90538 0.91338 0.89455 0.93549 0.92878 0.91983 0.92217 0.88067 0.87716 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.45 113.37 1.18 -0.41 16 2 S -0.02 -0.34 22.74 -56.49 -1.28 -1.63 16 3 C -0.04 -1.07 7.32 67.10 0.49 -0.58 16 4 C -0.17 -4.92 8.82 23.87 0.21 -4.71 16 5 C -0.24 -8.61 6.08 -19.00 -0.12 -8.72 16 6 C 0.57 24.79 7.65 86.65 0.66 25.45 16 7 O -0.59 -29.05 14.34 -4.08 -0.06 -29.11 16 8 N -0.59 -25.48 2.75 -830.72 -2.29 -27.76 16 9 C 0.07 2.30 7.83 127.77 1.00 3.30 16 10 C 0.22 10.79 2.26 44.24 0.10 10.89 16 11 H 0.05 2.51 3.84 -2.38 -0.01 2.50 16 12 C -0.14 -5.76 9.10 71.98 0.65 -5.11 16 13 C -0.52 -29.41 8.69 25.60 0.22 -29.19 16 14 H 0.05 3.16 6.92 -2.91 -0.02 3.14 16 15 C 0.03 1.68 5.47 84.66 0.46 2.15 16 16 N -0.93 -57.56 13.96 21.45 0.30 -57.26 16 17 Si 0.93 46.31 27.30 68.60 1.87 48.18 16 18 H -0.28 -14.43 7.11 99.48 0.71 -13.72 16 19 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.25 -11.91 6.38 99.48 0.63 -11.28 16 21 C 0.07 2.22 7.37 25.24 0.19 2.41 16 22 C -0.07 -1.86 9.79 71.23 0.70 -1.17 16 23 O -0.17 -4.54 10.19 0.75 0.01 -4.53 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.19 4.76 4.91 -2.91 -0.01 4.75 16 28 H 0.08 2.12 7.67 -2.38 -0.02 2.10 16 29 H 0.07 2.52 6.65 -2.39 -0.02 2.50 16 30 H 0.09 2.71 4.82 -2.39 -0.01 2.70 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 32 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.40 7.84 -2.38 -0.02 2.38 16 34 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 2.62 6.75 -2.39 -0.02 2.60 16 Total: -1.00 -72.21 317.39 5.33 -66.88 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.02 Total: 10.91 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.76 Total: -5.68 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -1.99 Total: -85.02 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.05 Total: -33.64 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.87 Total: 48.18 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -1.28 Total: -1.63 kcal Total: -72.21 5.33 -66.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.902 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds