Wall clock time and date at job start Fri Apr 10 2020 14:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76202 * 102.99723 * 2 1 4 4 C 1.35129 * 125.52492 * 180.02562 * 3 2 1 5 5 C 1.47057 * 105.87924 * 179.97438 * 4 3 2 6 6 C 1.47386 * 127.14085 * 179.97438 * 5 4 3 7 7 O 1.21620 * 119.99603 * 173.41811 * 6 5 4 8 8 N 1.34779 * 120.00092 * 353.14056 * 6 5 4 9 9 C 1.46495 * 120.00141 * 356.23504 * 8 6 5 10 10 C 1.46500 * 119.99703 * 176.23101 * 8 6 5 11 11 H 1.09005 * 109.47094 * 0.02562 * 10 8 6 12 12 C 1.52995 * 109.46964 * 120.00163 * 10 8 6 13 13 C 1.50700 * 109.47181 * 240.00239 * 10 8 6 14 14 H 1.08006 * 119.99898 * 359.97438 * 13 10 8 15 15 C 1.37871 * 119.99866 * 180.02562 * 13 10 8 16 16 N 1.31521 * 119.99771 * 180.02562 * 15 13 10 17 17 Si 1.86794 * 120.00419 * 0.02562 * 15 13 10 18 18 H 1.48495 * 109.47485 * 89.99623 * 17 15 13 19 19 H 1.48501 * 109.47110 * 210.00366 * 17 15 13 20 20 H 1.48503 * 109.46834 * 329.99891 * 17 15 13 21 21 C 1.36325 * 105.71052 * 0.26347 * 5 4 3 22 22 C 1.50696 * 125.71869 * 179.71778 * 21 5 4 23 23 O 1.33960 * 108.56608 * 359.57089 * 21 5 4 24 24 H 1.09005 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47153 * 299.99554 * 1 2 3 26 26 H 1.08997 * 109.46971 * 59.99854 * 1 2 3 27 27 H 1.08002 * 127.05705 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.47527 * 85.61957 * 9 8 6 29 29 H 1.08997 * 109.47244 * 205.62085 * 9 8 6 30 30 H 1.09004 * 109.46800 * 325.61739 * 9 8 6 31 31 H 1.08996 * 109.47164 * 60.00214 * 12 10 8 32 32 H 1.09003 * 109.47107 * 179.97438 * 12 10 8 33 33 H 1.09004 * 109.47557 * 299.99721 * 12 10 8 34 34 H 0.97000 * 120.00034 * 180.02562 * 16 15 13 35 35 H 1.09008 * 109.46719 * 89.99943 * 22 21 5 36 36 H 1.09002 * 109.47186 * 209.99252 * 22 21 5 37 37 H 1.09000 * 109.47109 * 329.99928 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.4585 2.2346 -0.0005 5 6 3.2883 3.6953 -0.0009 6 6 4.3522 4.7152 -0.0010 7 8 4.0671 5.8913 -0.1221 8 7 5.6406 4.3450 0.1388 9 6 5.9774 2.9387 0.3733 10 6 6.7043 5.3491 0.0560 11 1 6.2644 6.3307 -0.1206 12 6 7.4882 5.3709 1.3697 13 6 7.6343 5.0034 -1.0783 14 1 7.4515 4.1235 -1.6774 15 6 8.7189 5.8098 -1.3506 16 7 9.5303 5.5083 -2.3408 17 14 9.0362 7.3303 -0.3131 18 1 9.9053 6.9727 0.8367 19 1 9.7102 8.3626 -1.1409 20 1 7.7451 7.8646 0.1898 21 6 1.9420 3.9100 0.0054 22 6 1.2660 5.2568 0.0136 23 8 1.3208 2.7232 -0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 4.3899 1.6878 -0.0013 28 1 6.0505 2.4184 -0.5817 29 1 6.9323 2.8759 0.8952 30 1 5.2001 2.4755 0.9809 31 1 7.9280 4.3894 1.5467 32 1 8.2799 6.1176 1.3080 33 1 6.8156 5.6210 2.1902 34 1 10.2936 6.0754 -2.5322 35 1 1.0989 5.5856 -1.0122 36 1 0.3096 5.1801 0.5309 37 1 1.9005 5.9787 0.5278 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597146108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:08 Heat of formation + Delta-G solvation = -17.753464 kcal Electronic energy + Delta-G solvation = -20367.428589 eV Core-core repulsion = 17238.192646 eV Total energy + Delta-G solvation = -3129.235943 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.63337 -40.63772 -37.34964 -35.11872 -34.12543 -33.00555 -31.96701 -29.88997 -28.39024 -27.71443 -27.15208 -24.89863 -23.04142 -21.73930 -20.39450 -19.00128 -18.57924 -17.71147 -17.63129 -17.17844 -16.59903 -16.31848 -15.83617 -15.26860 -14.94601 -14.59136 -14.51940 -14.50516 -14.33712 -14.13075 -13.99286 -13.75135 -13.56408 -13.51083 -13.05990 -12.80383 -12.66457 -12.21622 -12.05918 -11.76222 -11.57809 -11.38014 -11.14847 -10.85031 -10.80070 -10.41971 -9.44659 -8.39098 -8.35412 -6.40767 0.07635 0.22828 0.78847 0.93802 1.26828 1.36154 1.45347 2.10130 2.27779 2.31001 2.33937 2.99517 3.63011 3.71421 3.93419 4.23820 4.27447 4.28250 4.33729 4.42568 4.50223 4.56613 4.58801 4.59228 4.64615 4.72194 4.84855 4.88748 5.03852 5.05374 5.17479 5.30326 5.46865 5.67227 5.76637 6.19558 6.59891 6.67413 7.17092 7.31388 8.80774 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.028201 B = 0.004394 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.646525 B = 6371.012102 C = 6928.432646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.021 6.021 3 C -0.039 4.039 4 C -0.173 4.173 5 C -0.246 4.246 6 C 0.573 3.427 7 O -0.587 6.587 8 N -0.586 5.586 9 C 0.072 3.928 10 C 0.233 3.767 11 H 0.036 0.964 12 C -0.154 4.154 13 C -0.529 4.529 14 H 0.042 0.958 15 C 0.024 3.976 16 N -0.939 5.939 17 Si 0.943 3.057 18 H -0.252 1.252 19 H -0.295 1.295 20 H -0.260 1.260 21 C 0.078 3.922 22 C -0.074 4.074 23 O -0.169 6.169 24 H 0.139 0.861 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.188 0.812 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.269 0.731 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.892 -10.819 8.910 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.215 5.785 3 C -0.197 4.197 4 C -0.201 4.201 5 C -0.251 4.251 6 C 0.363 3.637 7 O -0.471 6.471 8 N -0.315 5.315 9 C -0.070 4.070 10 C 0.130 3.870 11 H 0.054 0.946 12 C -0.212 4.212 13 C -0.567 4.567 14 H 0.060 0.940 15 C -0.175 4.175 16 N -0.579 5.579 17 Si 0.769 3.231 18 H -0.178 1.178 19 H -0.222 1.222 20 H -0.185 1.185 21 C 0.021 3.979 22 C -0.130 4.130 23 O -0.067 6.067 24 H 0.157 0.843 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.205 0.795 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.525 -11.262 8.762 23.383 hybrid contribution 0.230 1.756 -0.245 1.788 sum -18.295 -9.506 8.517 22.307 Atomic orbital electron populations 1.23771 0.91688 1.09073 1.06976 1.85816 1.09656 0.89740 1.93261 1.24516 0.90364 0.93602 1.11262 1.23506 0.98290 0.91483 1.06776 1.21114 0.93584 0.93802 1.16636 1.17631 0.82541 0.87224 0.76290 1.90660 1.83043 1.19628 1.53765 1.47680 1.05153 1.09941 1.68708 1.22402 1.02879 0.80559 1.01162 1.19024 0.85207 0.88917 0.93878 0.94609 1.22324 0.99534 1.02150 0.97188 1.21344 1.09478 1.11203 1.14688 0.93977 1.25656 0.95302 1.00392 0.96171 1.70008 1.16249 1.40372 1.31228 0.85949 0.79220 0.79185 0.78696 1.17768 1.22198 1.18464 1.23187 0.90318 0.87081 0.97320 1.20624 1.01480 0.85842 1.05059 1.83900 1.36712 1.13341 1.72719 0.84332 0.88814 0.89144 0.79512 0.93113 0.90319 0.88082 0.91070 0.93654 0.92486 0.92191 0.88641 0.87404 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.45 113.37 1.18 -0.38 16 2 S -0.02 -0.39 22.74 -56.49 -1.28 -1.67 16 3 C -0.04 -1.01 7.32 67.10 0.49 -0.52 16 4 C -0.17 -5.08 8.84 23.87 0.21 -4.87 16 5 C -0.25 -8.58 6.08 -19.00 -0.12 -8.70 16 6 C 0.57 24.71 7.66 86.65 0.66 25.37 16 7 O -0.59 -28.40 14.26 -4.10 -0.06 -28.45 16 8 N -0.59 -25.47 2.75 -830.73 -2.29 -27.76 16 9 C 0.07 2.47 7.92 127.77 1.01 3.49 16 10 C 0.23 11.55 2.22 44.24 0.10 11.64 16 11 H 0.04 1.98 5.97 -2.38 -0.01 1.96 16 12 C -0.15 -6.51 8.66 71.98 0.62 -5.89 16 13 C -0.53 -30.45 8.95 25.60 0.23 -30.22 16 14 H 0.04 2.66 7.89 -2.91 -0.02 2.64 16 15 C 0.02 1.38 5.45 84.65 0.46 1.84 16 16 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 17 Si 0.94 45.34 24.37 68.60 1.67 47.02 16 18 H -0.25 -11.09 6.87 99.48 0.68 -10.41 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.26 -12.31 6.53 99.48 0.65 -11.66 16 21 C 0.08 2.30 7.37 25.24 0.19 2.48 16 22 C -0.07 -1.78 9.82 71.23 0.70 -1.08 16 23 O -0.17 -4.42 10.19 0.71 0.01 -4.42 16 24 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.19 4.94 4.86 -2.91 -0.01 4.93 16 28 H 0.05 1.77 7.63 -2.39 -0.02 1.76 16 29 H 0.08 2.62 6.43 -2.39 -0.02 2.60 16 30 H 0.10 2.83 4.89 -2.38 -0.01 2.82 16 31 H 0.07 2.76 6.66 -2.39 -0.02 2.75 16 32 H 0.05 1.95 3.27 -2.39 -0.01 1.95 16 33 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 2.59 6.63 -2.39 -0.02 2.57 16 Total: -1.00 -73.20 310.89 5.11 -68.09 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.02 Total: 12.01 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.74 Total: -6.82 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -1.99 Total: -85.75 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.05 Total: -32.87 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.67 Total: 47.02 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -1.28 Total: -1.67 kcal Total: -73.20 5.11 -68.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.336 kcal (2) G-P(sol) polarization free energy of solvation -73.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds