Wall clock time and date at job start Fri Apr 10 2020 14:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34903 * 116.99559 * 2 1 4 4 O 1.21630 * 120.00181 * 359.97438 * 3 2 1 5 5 C 1.46397 * 119.99960 * 179.97438 * 3 2 1 6 6 C 1.36745 * 125.46440 * 180.29917 * 5 3 2 7 7 C 1.37415 * 113.29191 * 180.17917 * 6 5 3 8 8 C 1.50691 * 122.44845 * 179.82217 * 7 6 5 9 9 N 1.46902 * 109.47150 * 259.70873 * 8 7 6 10 10 C 1.46899 * 110.99869 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47354 * 325.00386 * 10 9 8 12 12 C 1.52997 * 109.47254 * 85.00254 * 10 9 8 13 13 C 1.50706 * 109.47101 * 205.00464 * 10 9 8 14 14 H 1.07998 * 119.99629 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99955 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99932 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99908 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47295 * 59.99168 * 17 15 13 19 19 H 1.48500 * 109.47035 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46845 * 299.99264 * 17 15 13 21 21 C 1.33862 * 115.10426 * 359.55294 * 7 6 5 22 22 C 1.50704 * 124.51653 * 180.24674 * 21 7 6 23 23 S 1.70615 * 110.96625 * 0.24643 * 21 7 6 24 24 H 1.08993 * 109.47174 * 60.00392 * 1 2 3 25 25 H 1.09000 * 109.46657 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47184 * 300.00148 * 1 2 3 27 27 H 1.08000 * 123.35536 * 359.97438 * 6 5 3 28 28 H 1.09003 * 109.47040 * 139.71012 * 8 7 6 29 29 H 1.09003 * 109.47432 * 19.71060 * 8 7 6 30 30 H 1.00897 * 111.00244 * 303.95289 * 9 8 7 31 31 H 1.09002 * 109.47153 * 300.00004 * 12 10 9 32 32 H 1.09001 * 109.46832 * 59.99813 * 12 10 9 33 33 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 34 34 H 0.97003 * 119.99476 * 180.02562 * 16 15 13 35 35 H 1.09002 * 109.46793 * 90.00165 * 22 21 7 36 36 H 1.09005 * 109.47092 * 210.00135 * 22 21 7 37 37 H 1.08996 * 109.47241 * 330.00089 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4018 2.2221 -0.0005 5 6 3.5263 1.2788 0.0006 6 6 4.2602 2.4325 0.0064 7 6 5.6168 2.2136 0.0016 8 6 6.6176 3.3402 0.0026 9 7 7.1237 3.5469 -1.3609 10 6 8.1045 4.6398 -1.3983 11 1 7.8186 5.4094 -0.6813 12 6 9.4883 4.0958 -1.0376 13 6 8.1432 5.2330 -2.7832 14 1 7.5034 4.8372 -3.5581 15 6 8.9960 6.2800 -3.0611 16 7 9.7754 6.7615 -2.1175 17 14 9.0444 7.0147 -4.7779 18 1 7.7015 7.5429 -5.1283 19 1 10.0358 8.1197 -4.8156 20 1 9.4341 5.9659 -5.7543 21 6 5.9844 0.9264 0.0015 22 6 7.4129 0.4463 0.0020 23 16 4.6200 -0.0980 0.0008 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.8178 3.4177 0.0109 28 1 7.4470 3.0888 0.6638 29 1 6.1367 4.2531 0.3540 30 1 7.5169 2.6957 -1.7336 31 1 9.4604 3.6669 -0.0360 32 1 9.7743 3.3263 -1.7546 33 1 10.2162 4.9068 -1.0658 34 1 10.3751 7.4985 -2.3131 35 1 7.7568 0.3303 1.0298 36 1 7.4739 -0.5130 -0.5121 37 1 8.0410 1.1742 -0.5115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:38 Heat of formation + Delta-G solvation = -57.902796 kcal Electronic energy + Delta-G solvation = -19523.481329 eV Core-core repulsion = 16392.504380 eV Total energy + Delta-G solvation = -3130.976949 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38846 -38.72557 -36.51615 -35.55345 -32.68977 -31.90562 -29.41404 -28.44717 -26.70397 -25.20607 -24.34586 -23.57294 -20.87546 -20.21753 -18.72620 -18.37055 -16.79351 -16.49370 -16.34029 -16.02589 -14.87720 -14.66641 -14.34008 -14.01359 -13.55428 -13.44853 -13.30802 -13.12818 -12.55345 -12.34979 -12.15286 -12.02195 -11.72953 -11.60330 -11.50187 -10.98861 -10.96693 -10.80422 -10.78939 -10.67309 -10.45161 -10.15310 -9.88985 -9.04129 -8.66437 -8.38618 -8.35956 -7.25816 -5.98592 -4.01869 0.38445 1.45097 1.89365 2.21782 2.53233 2.95593 3.35411 3.39109 3.43106 4.45065 4.73623 4.82160 4.89441 4.97482 5.13357 5.21696 5.29876 5.33091 5.45910 5.50433 5.64890 5.77167 5.88866 6.01055 6.13563 6.16058 6.37645 6.59535 6.66001 6.80203 7.05626 7.32679 7.59639 7.71539 7.87510 8.25272 8.50689 8.59033 9.05172 9.63592 11.08357 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.003717 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.154950 B = 7532.019597 C = 8285.821912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.359 6.359 3 C 0.543 3.457 4 O -0.501 6.501 5 C -0.280 4.280 6 C -0.007 4.007 7 C -0.110 4.110 8 C 0.116 3.884 9 N -0.677 5.677 10 C 0.211 3.789 11 H 0.035 0.965 12 C -0.170 4.170 13 C -0.496 4.496 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.182 4.182 22 C -0.089 4.089 23 S 0.221 5.779 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.156 0.844 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.325 0.675 31 H 0.005 0.995 32 H 0.027 0.973 33 H 0.090 0.910 34 H 0.260 0.740 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.978 -16.207 6.949 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.276 6.276 3 C 0.388 3.612 4 O -0.391 6.391 5 C -0.398 4.398 6 C -0.041 4.041 7 C -0.122 4.122 8 C -0.016 4.016 9 N -0.308 5.308 10 C 0.104 3.896 11 H 0.053 0.947 12 C -0.229 4.229 13 C -0.535 4.535 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.302 4.302 22 C -0.148 4.148 23 S 0.490 5.510 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.173 0.827 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.142 0.858 31 H 0.024 0.976 32 H 0.046 0.954 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.809 -16.965 6.784 21.755 hybrid contribution 0.873 1.703 -0.508 1.980 sum -10.936 -15.262 6.276 19.797 Atomic orbital electron populations 1.23266 0.75814 1.03681 1.02752 1.86579 1.23693 1.32448 1.84885 1.19669 0.87178 0.81586 0.72766 1.90896 1.65975 1.35821 1.46386 1.23232 0.93463 0.98735 1.24384 1.20694 0.92117 0.98436 0.92885 1.18807 0.94476 0.94596 1.04308 1.20586 0.93953 0.94244 0.92798 1.60898 1.42777 1.10051 1.17033 1.19200 0.85084 0.87883 0.97467 0.94719 1.22449 1.03790 1.01216 0.95449 1.21119 1.21030 1.15514 0.95788 0.91973 1.24940 0.95559 0.96780 0.97202 1.69870 1.25062 1.26397 1.32473 0.86562 0.77720 0.78575 0.84537 1.20260 1.21475 1.20377 1.24267 1.01698 0.97645 1.06635 1.20468 0.89277 1.01955 1.03101 1.82908 0.92697 1.06910 1.68463 0.91712 0.87984 0.91798 0.82686 0.94981 0.90564 0.85823 0.97587 0.95354 0.89155 0.93008 0.90324 0.90960 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.30 10.42 -41.05 -0.43 -4.72 16 3 C 0.54 7.85 7.92 34.01 0.27 8.12 16 4 O -0.50 -8.39 16.64 -19.36 -0.32 -8.71 16 5 C -0.28 -3.98 6.45 -36.84 -0.24 -4.22 16 6 C -0.01 -0.11 9.76 -40.42 -0.39 -0.50 16 7 C -0.11 -1.67 5.29 -106.46 -0.56 -2.23 16 8 C 0.12 2.01 5.04 -4.98 -0.03 1.99 16 9 N -0.68 -14.02 6.22 -109.22 -0.68 -14.70 16 10 C 0.21 5.19 2.57 -68.86 -0.18 5.01 16 11 H 0.03 0.94 7.80 -51.93 -0.41 0.53 16 12 C -0.17 -3.93 8.94 37.16 0.33 -3.60 16 13 C -0.50 -13.65 8.84 -34.44 -0.30 -13.95 16 14 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 16 N -0.90 -25.52 11.32 55.43 0.63 -24.89 16 17 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 C -0.18 -2.38 6.28 -35.84 -0.22 -2.61 16 22 C -0.09 -0.99 9.77 36.01 0.35 -0.64 16 23 S 0.22 2.58 22.87 -107.50 -2.46 0.12 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 28 H 0.03 0.54 7.02 -51.93 -0.36 0.18 16 29 H 0.08 1.36 7.99 -51.93 -0.42 0.95 16 30 H 0.32 6.35 7.12 -39.29 -0.28 6.07 16 31 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 16 32 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.07 6.14 -51.93 -0.32 0.75 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -30.46 327.66 -8.33 -38.79 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.99 Total: 2.46 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 0.00 Total: -9.81 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: -0.05 Total: -39.59 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.75 Total: -13.44 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.46 Total: 0.12 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.46 -8.33 -38.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.108 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds