Wall clock time and date at job start Fri Apr 10 2020 14:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34903 * 116.99559 * 2 1 4 4 O 1.21630 * 120.00181 * 359.97438 * 3 2 1 5 5 C 1.46397 * 119.99960 * 179.97438 * 3 2 1 6 6 C 1.36745 * 125.46440 * 180.29917 * 5 3 2 7 7 C 1.37415 * 113.29191 * 180.17917 * 6 5 3 8 8 C 1.50691 * 122.44845 * 179.82217 * 7 6 5 9 9 N 1.46902 * 109.47150 * 259.70873 * 8 7 6 10 10 C 1.46899 * 110.99869 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47354 * 325.00386 * 10 9 8 12 12 C 1.52997 * 109.47254 * 85.00254 * 10 9 8 13 13 C 1.50706 * 109.47101 * 205.00464 * 10 9 8 14 14 H 1.07998 * 119.99629 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99955 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99932 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99908 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47295 * 59.99168 * 17 15 13 19 19 H 1.48500 * 109.47035 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46845 * 299.99264 * 17 15 13 21 21 C 1.33862 * 115.10426 * 359.55294 * 7 6 5 22 22 C 1.50704 * 124.51653 * 180.24674 * 21 7 6 23 23 S 1.70615 * 110.96625 * 0.24643 * 21 7 6 24 24 H 1.08993 * 109.47174 * 60.00392 * 1 2 3 25 25 H 1.09000 * 109.46657 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47184 * 300.00148 * 1 2 3 27 27 H 1.08000 * 123.35536 * 359.97438 * 6 5 3 28 28 H 1.09003 * 109.47040 * 139.71012 * 8 7 6 29 29 H 1.09003 * 109.47432 * 19.71060 * 8 7 6 30 30 H 1.00897 * 111.00244 * 303.95289 * 9 8 7 31 31 H 1.09002 * 109.47153 * 300.00004 * 12 10 9 32 32 H 1.09001 * 109.46832 * 59.99813 * 12 10 9 33 33 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 34 34 H 0.97003 * 119.99476 * 180.02562 * 16 15 13 35 35 H 1.09002 * 109.46793 * 90.00165 * 22 21 7 36 36 H 1.09005 * 109.47092 * 210.00135 * 22 21 7 37 37 H 1.08996 * 109.47241 * 330.00089 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4018 2.2221 -0.0005 5 6 3.5263 1.2788 0.0006 6 6 4.2602 2.4325 0.0064 7 6 5.6168 2.2136 0.0016 8 6 6.6176 3.3402 0.0026 9 7 7.1237 3.5469 -1.3609 10 6 8.1045 4.6398 -1.3983 11 1 7.8186 5.4094 -0.6813 12 6 9.4883 4.0958 -1.0376 13 6 8.1432 5.2330 -2.7832 14 1 7.5034 4.8372 -3.5581 15 6 8.9960 6.2800 -3.0611 16 7 9.7754 6.7615 -2.1175 17 14 9.0444 7.0147 -4.7779 18 1 7.7015 7.5429 -5.1283 19 1 10.0358 8.1197 -4.8156 20 1 9.4341 5.9659 -5.7543 21 6 5.9844 0.9264 0.0015 22 6 7.4129 0.4463 0.0020 23 16 4.6200 -0.0980 0.0008 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.8178 3.4177 0.0109 28 1 7.4470 3.0888 0.6638 29 1 6.1367 4.2531 0.3540 30 1 7.5169 2.6957 -1.7336 31 1 9.4604 3.6669 -0.0360 32 1 9.7743 3.3263 -1.7546 33 1 10.2162 4.9068 -1.0658 34 1 10.3751 7.4985 -2.3131 35 1 7.7568 0.3303 1.0298 36 1 7.4739 -0.5130 -0.5121 37 1 8.0410 1.1742 -0.5115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:38 Heat of formation + Delta-G solvation = -76.475805 kcal Electronic energy + Delta-G solvation = -19524.286715 eV Core-core repulsion = 16392.504380 eV Total energy + Delta-G solvation = -3131.782335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44000 -39.90190 -37.64731 -37.19536 -34.46611 -33.14399 -30.93040 -29.51032 -27.81328 -27.22309 -25.72432 -24.62866 -22.22089 -21.91025 -19.91563 -19.40948 -18.27359 -17.80945 -17.47559 -17.15741 -16.77381 -16.15745 -15.63278 -15.13859 -14.83187 -14.78100 -14.38823 -14.32352 -14.03234 -13.59136 -13.34986 -13.22791 -13.08064 -12.95749 -12.84330 -12.70719 -12.59047 -12.41020 -12.12320 -11.99256 -11.88106 -11.83234 -11.61199 -11.04195 -10.46897 -9.71916 -9.44989 -8.92220 -8.08534 -6.19580 -0.70212 0.43019 0.83126 1.08606 1.43700 1.45402 1.53007 1.59778 1.82444 2.45267 3.19687 3.73327 3.76582 3.91247 4.02326 4.18552 4.29053 4.32046 4.48549 4.59594 4.68272 4.69070 4.70858 4.80495 4.83389 4.90893 5.06516 5.11213 5.15108 5.24692 5.41341 5.47090 5.71362 5.84106 6.28951 6.54852 6.65520 6.83548 6.95829 7.50429 8.96348 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.003717 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.154950 B = 7532.019597 C = 8285.821912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.544 3.456 4 O -0.534 6.534 5 C -0.303 4.303 6 C -0.024 4.024 7 C -0.133 4.133 8 C 0.123 3.877 9 N -0.683 5.683 10 C 0.216 3.784 11 H 0.002 0.998 12 C -0.155 4.155 13 C -0.517 4.517 14 H 0.052 0.948 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.958 3.042 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.179 4.179 22 C -0.092 4.092 23 S 0.306 5.694 24 H 0.062 0.938 25 H 0.140 0.860 26 H 0.064 0.936 27 H 0.140 0.860 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.333 0.667 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.261 0.739 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 -18.815 6.728 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C 0.390 3.610 4 O -0.427 6.427 5 C -0.421 4.421 6 C -0.059 4.059 7 C -0.144 4.144 8 C -0.008 4.008 9 N -0.314 5.314 10 C 0.108 3.892 11 H 0.020 0.980 12 C -0.215 4.215 13 C -0.556 4.556 14 H 0.070 0.930 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.784 3.216 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.300 4.300 22 C -0.151 4.151 23 S 0.576 5.424 24 H 0.081 0.919 25 H 0.158 0.842 26 H 0.083 0.917 27 H 0.158 0.842 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.991 -19.609 6.569 23.905 hybrid contribution 0.846 2.379 -0.389 2.555 sum -11.145 -17.231 6.180 21.431 Atomic orbital electron populations 1.23638 0.73725 1.06179 1.02768 1.86562 1.25718 1.30862 1.84229 1.19771 0.87323 0.81850 0.72032 1.90873 1.66726 1.37018 1.48054 1.23389 0.94073 0.99921 1.24698 1.20602 0.92502 0.98486 0.94268 1.18515 0.93763 0.94776 1.07368 1.20441 0.94577 0.94792 0.90964 1.60718 1.41539 1.09561 1.19551 1.18943 0.86670 0.88407 0.95207 0.98002 1.22228 1.01907 1.00282 0.97073 1.21436 1.21003 1.16191 0.96940 0.92972 1.25673 0.95244 0.97147 1.00702 1.69995 1.25432 1.26652 1.34077 0.85617 0.77600 0.77972 0.80433 1.20262 1.20929 1.19527 1.24640 1.03673 0.97379 1.04275 1.20599 0.87422 1.02576 1.04473 1.82580 0.89935 1.03982 1.65862 0.91937 0.84206 0.91672 0.84228 0.94129 0.92161 0.84916 0.95119 0.94696 0.92036 0.92995 0.88406 0.88446 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.64 16 2 O -0.36 -7.92 10.42 -58.17 -0.61 -8.52 16 3 C 0.54 15.45 7.92 69.95 0.55 16.00 16 4 O -0.53 -18.21 16.64 19.41 0.32 -17.89 16 5 C -0.30 -8.36 6.45 24.05 0.16 -8.21 16 6 C -0.02 -0.74 9.76 21.73 0.21 -0.53 16 7 C -0.13 -3.97 5.29 -21.06 -0.11 -4.08 16 8 C 0.12 4.34 5.04 85.55 0.43 4.77 16 9 N -0.68 -28.56 6.22 -499.46 -3.11 -31.67 16 10 C 0.22 10.84 2.57 44.17 0.11 10.95 16 11 H 0.00 0.11 7.80 -2.39 -0.02 0.09 16 12 C -0.16 -7.20 8.94 71.98 0.64 -6.56 16 13 C -0.52 -28.93 8.84 25.60 0.23 -28.70 16 14 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 15 C 0.01 0.59 5.30 84.65 0.45 1.04 16 16 N -0.92 -53.10 11.32 21.45 0.24 -52.86 16 17 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C -0.18 -4.27 6.28 24.69 0.15 -4.12 16 22 C -0.09 -1.76 9.77 71.24 0.70 -1.06 16 23 S 0.31 6.26 22.87 -56.49 -1.29 4.97 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.14 4.60 8.06 -2.91 -0.02 4.57 16 28 H 0.04 1.35 7.02 -2.39 -0.02 1.33 16 29 H 0.06 2.27 7.99 -2.39 -0.02 2.25 16 30 H 0.33 12.87 7.12 -89.70 -0.64 12.23 16 31 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 32 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.06 3.23 6.07 -2.38 -0.01 3.21 16 34 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.07 1.58 6.14 -2.39 -0.01 1.57 16 Total: -1.00 -66.51 327.66 2.76 -63.75 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.45 Total: 14.69 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.72 Total: -18.86 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -2.86 Total: -84.53 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.28 Total: -26.41 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.29 Total: 4.97 kcal Total: -66.51 2.76 -63.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.722 kcal (2) G-P(sol) polarization free energy of solvation -66.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds