Wall clock time and date at job start Fri Apr 10 2020 14:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29029 * 124.91704 * 2 1 4 4 C 1.31778 * 117.12461 * 180.02562 * 3 2 1 5 5 C 1.50705 * 122.75007 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47125 * 270.00554 * 5 4 3 7 7 O 1.20824 * 120.00304 * 359.97438 * 6 5 4 8 8 O 1.34234 * 119.99446 * 180.02562 * 6 5 4 9 9 C 1.45208 * 116.99704 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46793 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.46779 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47033 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99975 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99943 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99808 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00011 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46832 * 59.99487 * 16 14 12 18 18 H 1.48495 * 109.47032 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.46807 * 299.99746 * 16 14 12 20 20 C 1.33641 * 114.50181 * 0.02562 * 4 3 2 21 21 C 1.50703 * 126.03730 * 179.97438 * 20 4 3 22 22 S 1.70982 * 124.91788 * 180.31651 * 2 1 3 23 23 H 1.08992 * 109.47230 * 89.99952 * 1 2 3 24 24 H 1.09008 * 109.46713 * 209.99976 * 1 2 3 25 25 H 1.08996 * 109.46878 * 329.99456 * 1 2 3 26 26 H 1.09005 * 109.46594 * 30.00419 * 5 4 3 27 27 H 1.09000 * 109.46729 * 149.99907 * 5 4 3 28 28 H 1.09003 * 109.46450 * 299.99798 * 9 8 6 29 29 H 1.08999 * 109.46901 * 59.99534 * 9 8 6 30 30 H 1.08992 * 109.47255 * 299.99450 * 10 9 8 31 31 H 1.08995 * 109.47080 * 60.00122 * 10 9 8 32 32 H 1.09001 * 109.46846 * 299.99665 * 11 10 9 33 33 H 1.08999 * 109.46789 * 59.99877 * 11 10 9 34 34 H 0.97004 * 119.99395 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.47152 * 90.00002 * 21 20 4 36 36 H 1.09001 * 109.46980 * 330.00102 * 21 20 4 37 37 H 1.09004 * 109.47113 * 210.00083 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0246 -0.0012 6 6 4.8566 2.4061 -1.4221 7 8 4.3461 1.8091 -2.3402 8 8 5.7147 3.4087 -1.6678 9 6 5.9821 3.7211 -3.0605 10 6 6.9751 4.8822 -3.1410 11 6 7.2573 5.2110 -4.6085 12 6 8.2359 6.3542 -4.6879 13 1 8.6180 6.8019 -3.7823 14 6 8.6426 6.8294 -5.9166 15 7 8.1769 6.2846 -7.0194 16 14 9.8551 8.2471 -6.0151 17 1 11.1217 7.8627 -5.3418 18 1 10.1291 8.5660 -7.4393 19 1 9.2788 9.4388 -5.3424 20 6 3.9354 -0.4006 -0.0015 21 6 5.3575 -0.8994 -0.0029 22 16 2.4857 -1.4020 -0.0077 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 4.0908 2.8792 0.5128 27 1 5.4434 1.7222 0.5124 28 1 6.4047 2.8461 -3.5544 29 1 5.0524 4.0035 -3.5544 30 1 6.5521 5.7570 -2.6473 31 1 7.9048 4.6001 -2.6470 32 1 7.6806 4.3360 -5.1019 33 1 6.3277 5.4928 -5.1029 34 1 8.4634 6.6187 -7.8838 35 1 5.7011 -1.0203 1.0245 36 1 5.9945 -0.1795 -0.5167 37 1 5.4054 -1.8592 -0.5173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767551723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:53 Heat of formation + Delta-G solvation = -89.776361 kcal Electronic energy + Delta-G solvation = -19015.220970 eV Core-core repulsion = 15882.861880 eV Total energy + Delta-G solvation = -3132.359090 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.82234 -40.68693 -37.85487 -35.94690 -34.93360 -33.71190 -31.63007 -30.97234 -28.92476 -26.33215 -25.29375 -24.04704 -22.20104 -22.11519 -19.85285 -19.05712 -18.87809 -18.46788 -17.74907 -17.27899 -16.50885 -16.06234 -15.87796 -15.66410 -14.72211 -14.55734 -14.36674 -14.24621 -14.04676 -14.00039 -13.75882 -13.63824 -13.23681 -13.07438 -12.87689 -12.78431 -12.53974 -12.41817 -12.14920 -12.08815 -11.83974 -11.45153 -11.43439 -11.25791 -10.65701 -10.57528 -10.19495 -9.61871 -8.22341 -6.34252 -0.33358 0.33104 0.66806 1.11469 1.32706 1.41575 1.44817 1.52835 2.01329 2.41450 3.06414 3.11456 3.59493 3.84620 3.93289 3.98120 4.03741 4.04300 4.33291 4.38680 4.41760 4.55742 4.64190 4.65560 4.78007 4.81995 4.85039 4.91682 5.06464 5.07610 5.21300 5.40307 5.50554 5.62167 5.79000 6.17988 6.65470 6.73243 6.81658 7.35387 8.89813 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.040734 B = 0.002553 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.217242 B =10963.466081 C =11142.750850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.030 3.970 3 N -0.497 5.497 4 C 0.045 3.955 5 C -0.032 4.032 6 C 0.461 3.539 7 O -0.540 6.540 8 O -0.354 6.354 9 C 0.079 3.921 10 C -0.093 4.093 11 C 0.026 3.974 12 C -0.544 4.544 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.264 1.264 18 H -0.284 1.284 19 H -0.266 1.266 20 C -0.215 4.215 21 C -0.080 4.080 22 S 0.156 5.844 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.155 0.845 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.071 0.929 32 H -0.003 1.003 33 H -0.006 1.006 34 H 0.265 0.735 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 -17.119 19.944 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.248 4.248 3 N -0.212 5.212 4 C -0.086 4.086 5 C -0.071 4.071 6 C 0.305 3.695 7 O -0.430 6.430 8 O -0.270 6.270 9 C 0.005 3.995 10 C -0.131 4.131 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.085 0.915 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.794 3.206 17 H -0.189 1.189 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.336 4.336 21 C -0.139 4.139 22 S 0.412 5.588 23 H 0.109 0.891 24 H 0.125 0.875 25 H 0.109 0.891 26 H 0.154 0.846 27 H 0.173 0.827 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.158 -17.840 19.453 29.061 hybrid contribution 0.909 1.442 -0.987 1.970 sum -11.249 -16.398 18.466 27.137 Atomic orbital electron populations 1.20599 0.82943 1.05483 1.04662 1.27460 1.03168 0.90958 1.03236 1.66007 1.04935 1.33386 1.16918 1.19483 0.89978 0.93544 1.05544 1.19907 1.00075 0.97720 0.89421 1.24158 0.75206 0.76711 0.93405 1.90657 1.50965 1.53038 1.48290 1.86478 1.58939 1.50052 1.31559 1.23120 0.99398 0.98892 0.78056 1.21458 0.97564 0.95565 0.98464 1.18935 0.95453 0.95636 0.91121 1.21600 1.26320 1.17327 0.92929 0.91530 1.26038 0.98585 1.00046 0.95324 1.70105 1.45639 1.43550 0.98198 0.85423 0.79097 0.78963 0.77117 1.18892 1.20957 1.19037 1.26079 1.02293 0.95657 1.09612 1.20420 0.86868 1.02022 1.04603 1.83612 0.96053 1.11087 1.68075 0.89116 0.87511 0.89108 0.84633 0.82712 0.91861 0.92546 0.91481 0.91075 0.98485 0.98764 0.92669 0.87570 0.90917 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.46 71.24 0.75 -0.23 16 2 C 0.03 0.61 7.39 88.52 0.65 1.26 16 3 N -0.50 -13.16 10.53 -179.39 -1.89 -15.05 16 4 C 0.05 1.11 5.23 41.52 0.22 1.33 16 5 C -0.03 -0.69 5.75 29.10 0.17 -0.52 16 6 C 0.46 14.38 7.95 71.23 0.57 14.95 16 7 O -0.54 -20.80 15.78 21.97 0.35 -20.46 16 8 O -0.35 -11.78 10.22 -51.46 -0.53 -12.30 16 9 C 0.08 3.03 5.47 71.98 0.39 3.42 16 10 C -0.09 -3.91 5.53 30.60 0.17 -3.74 16 11 C 0.03 1.38 4.97 29.85 0.15 1.52 16 12 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 13 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 15 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 16 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 17 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 20 C -0.22 -4.41 6.59 24.64 0.16 -4.25 16 21 C -0.08 -1.17 9.81 71.24 0.70 -0.47 16 22 S 0.16 2.70 23.18 -56.49 -1.31 1.39 16 23 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.11 0.74 8.14 -2.38 -0.02 0.73 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.14 2.58 8.14 -2.38 -0.02 2.56 16 27 H 0.16 2.21 7.35 -2.39 -0.02 2.19 16 28 H 0.06 2.45 8.13 -2.39 -0.02 2.43 16 29 H 0.06 2.26 8.13 -2.39 -0.02 2.24 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.18 7.43 -2.39 -0.02 1.16 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -74.24 336.11 4.61 -69.63 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.06 Total: 4.92 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.62 Total: -17.16 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -1.60 Total: -72.22 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.18 Total: -32.76 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.31 Total: 1.39 kcal Total: -74.24 4.61 -69.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767551723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.144 kcal (2) G-P(sol) polarization free energy of solvation -74.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds