Wall clock time and date at job start Fri Apr 10 2020 14:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42893 * 109.47348 * 2 1 4 4 C 1.42898 * 114.00228 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47424 * 179.97438 * 4 3 2 6 6 O 1.21299 * 120.00117 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00342 * 180.02562 * 5 4 3 8 8 C 1.40081 * 120.00082 * 185.61293 * 7 5 4 9 9 C 1.38709 * 120.07990 * 34.06418 * 8 7 5 10 10 C 1.38189 * 120.01964 * 179.97438 * 9 8 7 11 11 C 1.38548 * 120.17976 * 0.03230 * 10 9 8 12 12 F 1.35098 * 119.92433 * 179.97438 * 11 10 9 13 13 C 1.38341 * 120.15132 * 359.97438 * 11 10 9 14 14 C 1.38741 * 119.98167 * 359.97438 * 13 11 10 15 15 O 1.35771 * 120.09067 * 180.29367 * 14 13 11 16 16 C 1.34813 * 116.99927 * 354.19117 * 15 14 13 17 17 H 1.07997 * 119.99919 * 354.51625 * 16 15 14 18 18 C 1.38632 * 120.00026 * 174.52021 * 16 15 14 19 19 N 1.31574 * 120.00036 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00077 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47381 * 59.99581 * 20 18 16 22 22 H 1.48500 * 109.47268 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46949 * 299.99652 * 20 18 16 24 24 H 1.09001 * 109.46983 * 300.00624 * 1 2 3 25 25 H 1.09000 * 109.46927 * 59.99915 * 1 2 3 26 26 H 1.08992 * 109.47348 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46983 * 239.99376 * 2 1 3 28 28 H 1.08998 * 109.46875 * 119.99538 * 2 1 3 29 29 H 1.09000 * 109.46835 * 59.99811 * 4 3 2 30 30 H 1.08996 * 109.47178 * 299.99969 * 4 3 2 31 31 H 0.97000 * 119.99438 * 5.60852 * 7 5 4 32 32 H 1.08000 * 119.98996 * 359.97438 * 9 8 7 33 33 H 1.07999 * 119.90633 * 180.02562 * 10 9 8 34 34 H 1.08009 * 120.00670 * 180.02562 * 13 11 10 35 35 H 0.96995 * 119.99921 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8196 2.9160 -0.0001 6 8 2.9611 3.7729 -0.0005 7 7 5.1211 3.2662 -0.0002 8 6 5.4838 4.6141 0.1178 9 6 4.7208 5.4739 0.8939 10 6 5.0801 6.8033 1.0099 11 6 6.2016 7.2816 0.3519 12 9 6.5478 8.5823 0.4685 13 6 6.9677 6.4304 -0.4242 14 6 6.6136 5.0944 -0.5443 15 8 7.3672 4.2557 -1.3006 16 6 8.3760 4.8067 -2.0050 17 1 8.4998 5.8794 -2.0220 18 6 9.2545 3.9963 -2.7075 19 7 9.1039 2.6894 -2.6864 20 14 10.6518 4.7598 -3.6841 21 1 11.5301 5.5330 -2.7697 22 1 11.4415 3.6868 -4.3400 23 1 10.0944 5.6668 -4.7194 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9763 -0.8892 30 1 3.8333 0.9766 0.8908 31 1 5.8066 2.5848 -0.0820 32 1 3.8457 5.1044 1.4078 33 1 4.4849 7.4711 1.6151 34 1 7.8417 6.8058 -0.9358 35 1 9.7183 2.1225 -3.1783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120203253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:49 Heat of formation + Delta-G solvation = -126.993044 kcal Electronic energy + Delta-G solvation = -21642.384890 eV Core-core repulsion = 17942.198787 eV Total energy + Delta-G solvation = -3700.186103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.27697 -40.13907 -38.78948 -37.60935 -36.28405 -34.08773 -32.44348 -31.65813 -29.59324 -28.99119 -26.87281 -25.51807 -22.93127 -22.53000 -21.67328 -20.10957 -18.38127 -17.97767 -17.07523 -16.93908 -16.45584 -16.13063 -15.39219 -15.26967 -14.97585 -14.56326 -14.42455 -14.30376 -13.70572 -13.57242 -13.35434 -13.07787 -12.76386 -12.54929 -12.34506 -12.16718 -11.68317 -11.54103 -11.37167 -11.34824 -10.98682 -10.75174 -10.58016 -9.85358 -9.77131 -9.71896 -9.36457 -8.98564 -7.92754 -7.15626 -6.63695 -4.21380 1.75595 2.08675 2.87837 2.98523 3.06277 3.06580 3.09096 3.82457 4.06110 4.29811 4.81824 4.86124 4.88749 4.92608 5.06833 5.07901 5.15954 5.21209 5.24035 5.50112 5.55257 5.71952 5.75708 5.96853 5.98967 6.17988 6.48408 6.70926 6.87899 6.88608 6.95844 7.03363 7.16861 7.60102 7.79463 7.85854 8.50012 8.82318 9.42615 10.53338 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013610 B = 0.004909 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.790703 B = 5702.049595 C = 7614.966652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.047 3.953 5 C 0.510 3.490 6 O -0.515 6.515 7 N -0.649 5.649 8 C 0.061 3.939 9 C -0.049 4.049 10 C -0.228 4.228 11 C 0.131 3.869 12 F -0.151 7.151 13 C -0.258 4.258 14 C 0.159 3.841 15 O -0.168 6.168 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.860 5.860 20 Si 0.943 3.057 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.268 1.268 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.415 0.585 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 -4.728 5.258 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.283 6.283 4 C -0.033 4.033 5 C 0.296 3.704 6 O -0.390 6.390 7 N -0.296 5.296 8 C -0.033 4.033 9 C -0.069 4.069 10 C -0.248 4.248 11 C 0.111 3.889 12 F -0.129 7.129 13 C -0.279 4.279 14 C 0.103 3.897 15 O -0.070 6.070 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.161 4.161 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.193 1.193 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.252 0.748 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.398 -4.435 5.115 10.787 hybrid contribution 1.415 0.057 -0.591 1.535 sum -6.983 -4.378 4.524 9.401 Atomic orbital electron populations 1.21724 0.93542 1.02069 1.03428 1.22537 0.95844 0.83555 1.00245 1.88004 1.18654 1.26178 1.95468 1.22142 0.83691 0.94505 1.02949 1.20240 0.82508 0.90612 0.77069 1.90708 1.49238 1.51471 1.47578 1.43014 1.07304 1.07251 1.71997 1.16794 0.97463 0.84669 1.04329 1.20475 0.98550 0.92064 0.95812 1.20452 0.99733 0.96499 1.08111 1.17448 0.95253 0.77574 0.98595 1.91414 1.92055 1.34683 1.94785 1.20872 1.05001 0.93668 1.08330 1.18808 0.91440 0.89150 0.90271 1.83927 1.39444 1.33063 1.50607 1.21303 1.05955 0.93238 1.26336 0.88863 1.25281 0.98155 0.95318 0.97374 1.69994 1.36720 1.03065 1.39577 0.85741 0.79579 0.78561 0.79434 1.19320 1.20162 1.19341 0.91760 0.91686 0.91103 0.93114 0.93233 0.89870 0.90082 0.74823 0.84688 0.85833 0.83891 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.05 0.55 6.66 37.16 0.25 0.80 16 3 O -0.36 -5.25 9.88 -55.14 -0.54 -5.80 16 4 C 0.05 0.62 6.42 36.00 0.23 0.85 16 5 C 0.51 8.91 7.64 -10.98 -0.08 8.83 16 6 O -0.52 -10.81 14.26 -14.37 -0.20 -11.02 16 7 N -0.65 -11.78 5.20 -9.72 -0.05 -11.83 16 8 C 0.06 1.27 6.28 -83.45 -0.52 0.75 16 9 C -0.05 -0.94 8.65 -39.43 -0.34 -1.28 16 10 C -0.23 -4.24 10.02 -39.49 -0.40 -4.64 16 11 C 0.13 2.62 7.29 -39.43 -0.29 2.33 16 12 F -0.15 -2.88 17.26 2.25 0.04 -2.84 16 13 C -0.26 -5.61 9.11 -39.36 -0.36 -5.97 16 14 C 0.16 3.66 6.66 -38.93 -0.26 3.40 16 15 O -0.17 -4.33 9.30 0.03 0.00 -4.33 16 16 C -0.39 -10.27 9.44 30.88 0.29 -9.98 16 17 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 18 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 19 N -0.86 -23.14 13.67 55.48 0.76 -22.38 16 20 Si 0.94 19.50 29.55 -169.99 -5.02 14.47 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.42 6.96 8.55 -40.82 -0.35 6.61 16 32 H 0.14 2.51 6.48 -52.49 -0.34 2.17 16 33 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.14 3.10 5.71 -52.48 -0.30 2.80 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -30.83 313.79 -5.27 -36.10 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.78 Total: 7.71 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.19 Total: -4.82 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.71 Total: -34.20 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.75 Total: -21.14 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.83 -5.27 -36.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120203253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.890 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds