Wall clock time and date at job start Fri Apr 10 2020 14:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42893 * 109.47348 * 2 1 4 4 C 1.42898 * 114.00228 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47424 * 179.97438 * 4 3 2 6 6 O 1.21299 * 120.00117 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00342 * 180.02562 * 5 4 3 8 8 C 1.40081 * 120.00082 * 185.61293 * 7 5 4 9 9 C 1.38709 * 120.07990 * 34.06418 * 8 7 5 10 10 C 1.38189 * 120.01964 * 179.97438 * 9 8 7 11 11 C 1.38548 * 120.17976 * 0.03230 * 10 9 8 12 12 F 1.35098 * 119.92433 * 179.97438 * 11 10 9 13 13 C 1.38341 * 120.15132 * 359.97438 * 11 10 9 14 14 C 1.38741 * 119.98167 * 359.97438 * 13 11 10 15 15 O 1.35771 * 120.09067 * 180.29367 * 14 13 11 16 16 C 1.34813 * 116.99927 * 354.19117 * 15 14 13 17 17 H 1.07997 * 119.99919 * 354.51625 * 16 15 14 18 18 C 1.38632 * 120.00026 * 174.52021 * 16 15 14 19 19 N 1.31574 * 120.00036 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00077 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47381 * 59.99581 * 20 18 16 22 22 H 1.48500 * 109.47268 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46949 * 299.99652 * 20 18 16 24 24 H 1.09001 * 109.46983 * 300.00624 * 1 2 3 25 25 H 1.09000 * 109.46927 * 59.99915 * 1 2 3 26 26 H 1.08992 * 109.47348 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46983 * 239.99376 * 2 1 3 28 28 H 1.08998 * 109.46875 * 119.99538 * 2 1 3 29 29 H 1.09000 * 109.46835 * 59.99811 * 4 3 2 30 30 H 1.08996 * 109.47178 * 299.99969 * 4 3 2 31 31 H 0.97000 * 119.99438 * 5.60852 * 7 5 4 32 32 H 1.08000 * 119.98996 * 359.97438 * 9 8 7 33 33 H 1.07999 * 119.90633 * 180.02562 * 10 9 8 34 34 H 1.08009 * 120.00670 * 180.02562 * 13 11 10 35 35 H 0.96995 * 119.99921 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8196 2.9160 -0.0001 6 8 2.9611 3.7729 -0.0005 7 7 5.1211 3.2662 -0.0002 8 6 5.4838 4.6141 0.1178 9 6 4.7208 5.4739 0.8939 10 6 5.0801 6.8033 1.0099 11 6 6.2016 7.2816 0.3519 12 9 6.5478 8.5823 0.4685 13 6 6.9677 6.4304 -0.4242 14 6 6.6136 5.0944 -0.5443 15 8 7.3672 4.2557 -1.3006 16 6 8.3760 4.8067 -2.0050 17 1 8.4998 5.8794 -2.0220 18 6 9.2545 3.9963 -2.7075 19 7 9.1039 2.6894 -2.6864 20 14 10.6518 4.7598 -3.6841 21 1 11.5301 5.5330 -2.7697 22 1 11.4415 3.6868 -4.3400 23 1 10.0944 5.6668 -4.7194 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9763 -0.8892 30 1 3.8333 0.9766 0.8908 31 1 5.8066 2.5848 -0.0820 32 1 3.8457 5.1044 1.4078 33 1 4.4849 7.4711 1.6151 34 1 7.8417 6.8058 -0.9358 35 1 9.7183 2.1225 -3.1783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120203253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:48 Heat of formation + Delta-G solvation = -146.655982 kcal Electronic energy + Delta-G solvation = -21643.237539 eV Core-core repulsion = 17942.198787 eV Total energy + Delta-G solvation = -3701.038752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.85432 -41.66754 -40.32658 -38.75814 -37.91680 -35.61408 -34.32194 -32.49723 -31.19537 -30.47888 -28.17728 -27.34743 -24.17980 -23.66335 -23.27597 -21.56815 -20.16941 -19.59989 -18.46379 -18.34255 -17.50137 -17.32571 -17.02051 -16.85785 -16.56132 -16.01405 -15.79266 -15.71440 -15.43659 -15.25055 -14.91298 -14.20044 -13.96821 -13.87480 -13.74577 -13.43045 -13.22756 -13.04941 -12.59839 -12.37329 -12.29943 -12.17561 -12.15155 -11.69855 -11.24342 -10.88250 -10.79876 -10.66045 -9.59911 -8.80947 -8.52151 -6.18118 0.12952 0.43125 1.37689 1.45585 1.49673 1.51172 1.75217 2.14038 2.63073 2.99277 3.04120 3.13991 3.42298 3.63521 3.91845 4.14001 4.17220 4.17925 4.28682 4.33375 4.37061 4.52805 4.59987 4.84244 4.87934 5.00208 5.05145 5.19617 5.26366 5.28599 5.31711 5.49557 5.91650 5.97327 6.11022 6.45283 6.92375 7.08670 7.59637 8.68141 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013610 B = 0.004909 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.790703 B = 5702.049595 C = 7614.966652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.398 6.398 4 C 0.054 3.946 5 C 0.508 3.492 6 O -0.553 6.553 7 N -0.648 5.648 8 C 0.060 3.940 9 C -0.050 4.050 10 C -0.204 4.204 11 C 0.125 3.875 12 F -0.144 7.144 13 C -0.264 4.264 14 C 0.134 3.866 15 O -0.200 6.200 16 C -0.418 4.418 17 H 0.098 0.902 18 C -0.006 4.006 19 N -0.903 5.903 20 Si 1.010 2.990 21 H -0.259 1.259 22 H -0.269 1.269 23 H -0.263 1.263 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.421 0.579 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.275 -4.826 5.935 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.318 6.318 4 C -0.025 4.025 5 C 0.296 3.704 6 O -0.431 6.431 7 N -0.295 5.295 8 C -0.034 4.034 9 C -0.071 4.071 10 C -0.224 4.224 11 C 0.105 3.895 12 F -0.122 7.122 13 C -0.285 4.285 14 C 0.080 3.920 15 O -0.105 6.105 16 C -0.494 4.494 17 H 0.115 0.885 18 C -0.206 4.206 19 N -0.539 5.539 20 Si 0.830 3.170 21 H -0.184 1.184 22 H -0.193 1.193 23 H -0.188 1.188 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.258 0.742 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.942 -4.532 5.819 11.591 hybrid contribution 1.365 0.156 -0.647 1.519 sum -7.576 -4.376 5.172 10.164 Atomic orbital electron populations 1.21772 0.92955 1.03536 1.02479 1.22822 0.96394 0.81887 1.01815 1.87963 1.19056 1.28940 1.95808 1.22177 0.83789 0.91145 1.05428 1.21087 0.81489 0.92419 0.75374 1.90676 1.50032 1.53051 1.49329 1.43118 1.08073 1.06468 1.71858 1.17085 0.96671 0.86170 1.03493 1.20686 0.98565 0.92269 0.95560 1.20851 0.98603 0.96567 1.06361 1.17445 0.95568 0.77734 0.98720 1.91432 1.92054 1.34021 1.94712 1.20962 1.05211 0.93738 1.08596 1.19155 0.92185 0.89606 0.91046 1.83899 1.40417 1.33934 1.52270 1.21693 1.06561 0.93800 1.27321 0.88456 1.26354 1.00367 0.95776 0.98125 1.70097 1.38188 1.04403 1.41222 0.84751 0.76343 0.77903 0.77980 1.18379 1.19346 1.18774 0.92440 0.92900 0.88421 0.91919 0.91182 0.88079 0.86571 0.74178 0.83561 0.82382 0.84494 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.66 16 2 C 0.05 0.84 6.66 71.98 0.48 1.31 16 3 O -0.40 -10.87 9.88 -129.95 -1.28 -12.15 16 4 C 0.05 1.31 6.42 71.23 0.46 1.77 16 5 C 0.51 17.35 7.64 87.66 0.67 18.02 16 6 O -0.55 -22.96 14.26 15.95 0.23 -22.74 16 7 N -0.65 -23.39 5.20 -303.03 -1.58 -24.96 16 8 C 0.06 2.49 6.28 38.23 0.24 2.74 16 9 C -0.05 -1.88 8.65 22.37 0.19 -1.68 16 10 C -0.20 -7.11 10.02 22.33 0.22 -6.89 16 11 C 0.13 4.83 7.29 22.37 0.16 5.00 16 12 F -0.14 -5.22 17.26 44.97 0.78 -4.44 16 13 C -0.26 -11.57 9.11 22.41 0.20 -11.36 16 14 C 0.13 6.24 6.66 22.69 0.15 6.40 16 15 O -0.20 -10.70 9.30 -22.80 -0.21 -10.91 16 16 C -0.42 -22.50 9.44 67.91 0.64 -21.86 16 17 H 0.10 4.93 5.30 -2.91 -0.02 4.92 16 18 C -0.01 -0.32 5.49 84.83 0.47 0.15 16 19 N -0.90 -49.80 13.67 21.61 0.30 -49.51 16 20 Si 1.01 40.17 29.55 68.60 2.03 42.20 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.42 14.17 8.55 -92.71 -0.79 13.38 16 32 H 0.15 5.18 6.48 -2.91 -0.02 5.16 16 33 H 0.16 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.14 6.06 5.71 -2.91 -0.02 6.05 16 35 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -67.79 313.79 5.23 -62.56 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.35 Total: 28.02 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.63 Total: -8.07 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.28 Total: -74.47 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -1.27 Total: -45.80 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.44 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -67.79 5.23 -62.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120203253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.093 kcal (2) G-P(sol) polarization free energy of solvation -67.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds