Wall clock time and date at job start Fri Apr 10 2020 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47066 * 2 1 4 4 C 1.36935 * 119.99602 * 293.72513 * 3 2 1 5 5 H 1.08006 * 119.99505 * 149.43202 * 4 3 2 6 6 C 1.38808 * 120.00310 * 329.43015 * 4 3 2 7 7 N 1.31619 * 120.00237 * 337.46900 * 6 4 3 8 8 Si 1.86807 * 120.00033 * 157.46251 * 6 4 3 9 9 H 1.48502 * 109.46802 * 89.99991 * 8 6 4 10 10 H 1.48497 * 109.47359 * 210.00358 * 8 6 4 11 11 H 1.48504 * 109.46875 * 330.00381 * 8 6 4 12 12 S 1.65591 * 120.00020 * 113.72436 * 3 2 1 13 13 O 1.42101 * 104.28052 * 333.92963 * 12 3 2 14 14 O 1.42097 * 104.27678 * 206.07440 * 12 3 2 15 15 C 1.81403 * 104.45077 * 89.99942 * 12 3 2 16 16 C 1.50702 * 109.47089 * 179.97438 * 15 12 3 17 17 C 1.38235 * 119.99842 * 90.00673 * 16 15 12 18 18 C 1.38226 * 120.00000 * 179.72725 * 17 16 15 19 19 C 1.38233 * 120.00392 * 0.24628 * 18 17 16 20 20 C 1.50694 * 120.00482 * 180.02562 * 19 18 17 21 21 C 1.38238 * 119.99784 * 0.02818 * 19 18 17 22 22 C 1.38235 * 119.99978 * 270.23947 * 16 15 12 23 23 H 1.09002 * 109.47864 * 59.99773 * 1 2 3 24 24 H 1.09000 * 109.47157 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47164 * 299.99798 * 1 2 3 26 26 H 1.09000 * 109.46818 * 240.00232 * 2 1 3 27 27 H 1.09001 * 109.47398 * 119.99976 * 2 1 3 28 28 H 0.97004 * 119.99934 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46639 * 59.99746 * 15 12 3 30 30 H 1.08995 * 109.47109 * 300.00253 * 15 12 3 31 31 H 1.08006 * 119.99706 * 359.97438 * 17 16 15 32 32 H 1.08005 * 119.99945 * 180.27432 * 18 17 16 33 33 H 1.09003 * 109.46803 * 90.00266 * 20 19 18 34 34 H 1.08995 * 109.47574 * 210.00214 * 20 19 18 35 35 H 1.09001 * 109.47299 * 330.00390 * 20 19 18 36 36 H 1.07992 * 120.00329 * 179.97438 * 21 19 18 37 37 H 1.07996 * 120.00205 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7966 2.1858 -1.0857 5 1 1.6839 3.2518 -0.9538 6 6 1.7169 1.6313 -2.3557 7 7 2.2718 0.4630 -2.5998 8 14 0.8218 2.5431 -3.7185 9 1 1.7778 3.4257 -4.4343 10 1 0.2430 1.5633 -4.6725 11 1 -0.2669 3.3653 -3.1318 12 16 2.8383 1.9696 1.3129 13 8 2.3670 1.1858 2.4005 14 8 2.6118 3.3717 1.2680 15 6 4.5786 1.5943 0.9650 16 6 5.4359 2.0880 2.1019 17 6 5.7108 1.2568 3.1717 18 6 6.5017 1.7077 4.2118 19 6 7.0136 2.9914 4.1847 20 6 7.8764 3.4827 5.3183 21 6 6.7341 3.8246 3.1176 22 6 5.9434 3.3736 2.0772 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2163 0.0758 -3.4875 29 1 4.8795 2.0896 0.0418 30 1 4.7034 0.5170 0.8566 31 1 5.3108 0.2538 3.1929 32 1 6.7201 1.0567 5.0455 33 1 8.9211 3.2573 5.1039 34 1 7.7525 4.5600 5.4288 35 1 7.5798 2.9863 6.2423 36 1 7.1337 4.8276 3.0965 37 1 5.7252 4.0244 1.2434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288859979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:32 Heat of formation + Delta-G solvation = -54.392850 kcal Electronic energy + Delta-G solvation = -20526.816732 eV Core-core repulsion = 17395.991986 eV Total energy + Delta-G solvation = -3130.824746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.11770 -36.17096 -35.65064 -34.44815 -33.58496 -31.89630 -30.66023 -29.30153 -29.00848 -25.06174 -24.60486 -22.45067 -21.59156 -20.60291 -18.41759 -16.96682 -16.53441 -15.99691 -15.33083 -15.06659 -14.86174 -14.65532 -14.39862 -13.65605 -13.55172 -13.16006 -12.98905 -12.53484 -12.41675 -12.33285 -12.04196 -11.88191 -11.62603 -11.30775 -11.01378 -10.97438 -10.90796 -10.74766 -10.66005 -10.61984 -10.52433 -10.22347 -9.91853 -9.77432 -9.40549 -8.67141 -8.20063 -7.82449 -6.60990 -4.13905 1.31814 1.66365 1.87434 3.04858 3.11878 3.20037 3.88429 4.01510 4.27243 4.63864 4.96557 5.00469 5.09992 5.26726 5.28187 5.38608 5.54008 5.59647 5.75679 5.83676 5.92987 6.04219 6.11512 6.18682 6.31997 6.36478 6.40254 6.51295 6.68666 6.70233 6.79192 6.92953 6.94450 7.14231 7.27656 7.30769 7.50942 8.24496 8.61051 9.09881 10.27653 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.005021 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.358813 B = 5574.822754 C = 5994.024444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.107 3.893 3 N -0.800 5.800 4 C -0.235 4.235 5 H 0.113 0.887 6 C 0.036 3.964 7 N -0.822 5.822 8 Si 0.922 3.078 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.262 1.262 12 S 2.467 3.533 13 O -1.000 7.000 14 O -0.981 6.981 15 C -0.617 4.617 16 C -0.064 4.064 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.105 4.105 20 C -0.109 4.109 21 C -0.118 4.118 22 C -0.115 4.115 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.276 0.724 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.122 0.324 4.787 7.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 N -0.623 5.623 4 C -0.384 4.384 5 H 0.130 0.870 6 C -0.178 4.178 7 N -0.461 5.461 8 Si 0.747 3.253 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.186 1.186 12 S 2.568 3.432 13 O -0.990 6.990 14 O -0.971 6.971 15 C -0.733 4.733 16 C -0.065 4.065 17 C -0.135 4.135 18 C -0.137 4.137 19 C -0.105 4.105 20 C -0.166 4.166 21 C -0.136 4.136 22 C -0.134 4.134 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.122 0.878 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.968 0.570 5.683 8.260 hybrid contribution 0.336 -0.020 -1.155 1.203 sum 6.304 0.550 4.528 7.781 Atomic orbital electron populations 1.21875 0.96963 0.99790 1.01781 1.21459 0.94070 0.83355 1.02987 1.53943 1.53700 1.20124 1.34546 1.19915 1.40158 0.93570 0.84757 0.86961 1.25792 0.96687 0.96613 0.98746 1.69901 1.36450 1.16978 1.22765 0.85975 0.80193 0.79431 0.79683 1.19704 1.20312 1.18627 1.14165 0.76327 0.75268 0.77435 1.93329 1.78676 1.71078 1.55871 1.93338 1.83898 1.32607 1.87245 1.30231 1.30669 1.09134 1.03281 1.19384 0.97815 0.94327 0.95023 1.21129 0.98476 1.00016 0.93915 1.20954 0.98512 0.95542 0.98643 1.19864 0.99582 0.94492 0.96566 1.20733 0.98575 1.01248 0.96020 1.20973 0.99209 0.99429 0.93969 1.21170 0.97401 0.95550 0.99241 0.92205 0.93537 0.93686 0.87833 0.92362 0.91313 0.85840 0.86568 0.85702 0.86155 0.91556 0.91748 0.91772 0.86109 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.96 37.16 0.37 -2.54 16 2 C 0.11 2.37 5.78 -4.04 -0.02 2.34 16 3 N -0.80 -19.12 2.91 -59.91 -0.17 -19.30 16 4 C -0.23 -5.73 8.63 -15.06 -0.13 -5.86 16 5 H 0.11 2.79 7.26 -52.48 -0.38 2.41 16 6 C 0.04 0.82 4.63 -17.43 -0.08 0.74 16 7 N -0.82 -19.10 11.06 55.49 0.61 -18.49 16 8 Si 0.92 18.05 29.61 -169.99 -5.03 13.02 16 9 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 10 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 11 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 12 S 2.47 58.91 5.34 -107.50 -0.57 58.33 16 13 O -1.00 -25.46 16.65 -57.54 -0.96 -26.42 16 14 O -0.98 -25.93 16.82 -57.54 -0.97 -26.90 16 15 C -0.62 -12.66 6.30 36.01 0.23 -12.43 16 16 C -0.06 -1.25 5.14 -104.62 -0.54 -1.79 16 17 C -0.12 -2.08 9.70 -39.59 -0.38 -2.47 16 18 C -0.12 -1.82 9.70 -39.59 -0.38 -2.20 16 19 C -0.10 -1.52 5.88 -104.63 -0.62 -2.14 16 20 C -0.11 -1.15 10.01 36.00 0.36 -0.79 16 21 C -0.12 -1.83 9.70 -39.58 -0.38 -2.21 16 22 C -0.11 -2.09 9.70 -39.58 -0.38 -2.47 16 23 H 0.06 1.23 7.42 -51.93 -0.39 0.84 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.91 8.14 -51.92 -0.42 0.48 16 26 H 0.10 2.34 5.53 -51.93 -0.29 2.05 16 27 H 0.06 1.22 7.01 -51.93 -0.36 0.86 16 28 H 0.28 5.98 8.31 -40.82 -0.34 5.64 16 29 H 0.12 2.49 8.09 -51.92 -0.42 2.07 16 30 H 0.12 2.23 8.09 -51.93 -0.42 1.81 16 31 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 32 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -29.18 323.38 -9.38 -38.56 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.19 Total: 8.13 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -1.97 Total: -31.81 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.44 Total: -37.79 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -1.93 Total: -53.32 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 58.91 SS G_CDS: -0.57 Total: 58.33 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.18 -9.38 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288859979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.830 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds