Wall clock time and date at job start Fri Apr 10 2020 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47066 * 2 1 4 4 C 1.36935 * 119.99602 * 293.72513 * 3 2 1 5 5 H 1.08006 * 119.99505 * 149.43202 * 4 3 2 6 6 C 1.38808 * 120.00310 * 329.43015 * 4 3 2 7 7 N 1.31619 * 120.00237 * 337.46900 * 6 4 3 8 8 Si 1.86807 * 120.00033 * 157.46251 * 6 4 3 9 9 H 1.48502 * 109.46802 * 89.99991 * 8 6 4 10 10 H 1.48497 * 109.47359 * 210.00358 * 8 6 4 11 11 H 1.48504 * 109.46875 * 330.00381 * 8 6 4 12 12 S 1.65591 * 120.00020 * 113.72436 * 3 2 1 13 13 O 1.42101 * 104.28052 * 333.92963 * 12 3 2 14 14 O 1.42097 * 104.27678 * 206.07440 * 12 3 2 15 15 C 1.81403 * 104.45077 * 89.99942 * 12 3 2 16 16 C 1.50702 * 109.47089 * 179.97438 * 15 12 3 17 17 C 1.38235 * 119.99842 * 90.00673 * 16 15 12 18 18 C 1.38226 * 120.00000 * 179.72725 * 17 16 15 19 19 C 1.38233 * 120.00392 * 0.24628 * 18 17 16 20 20 C 1.50694 * 120.00482 * 180.02562 * 19 18 17 21 21 C 1.38238 * 119.99784 * 0.02818 * 19 18 17 22 22 C 1.38235 * 119.99978 * 270.23947 * 16 15 12 23 23 H 1.09002 * 109.47864 * 59.99773 * 1 2 3 24 24 H 1.09000 * 109.47157 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47164 * 299.99798 * 1 2 3 26 26 H 1.09000 * 109.46818 * 240.00232 * 2 1 3 27 27 H 1.09001 * 109.47398 * 119.99976 * 2 1 3 28 28 H 0.97004 * 119.99934 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46639 * 59.99746 * 15 12 3 30 30 H 1.08995 * 109.47109 * 300.00253 * 15 12 3 31 31 H 1.08006 * 119.99706 * 359.97438 * 17 16 15 32 32 H 1.08005 * 119.99945 * 180.27432 * 18 17 16 33 33 H 1.09003 * 109.46803 * 90.00266 * 20 19 18 34 34 H 1.08995 * 109.47574 * 210.00214 * 20 19 18 35 35 H 1.09001 * 109.47299 * 330.00390 * 20 19 18 36 36 H 1.07992 * 120.00329 * 179.97438 * 21 19 18 37 37 H 1.07996 * 120.00205 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7966 2.1858 -1.0857 5 1 1.6839 3.2518 -0.9538 6 6 1.7169 1.6313 -2.3557 7 7 2.2718 0.4630 -2.5998 8 14 0.8218 2.5431 -3.7185 9 1 1.7778 3.4257 -4.4343 10 1 0.2430 1.5633 -4.6725 11 1 -0.2669 3.3653 -3.1318 12 16 2.8383 1.9696 1.3129 13 8 2.3670 1.1858 2.4005 14 8 2.6118 3.3717 1.2680 15 6 4.5786 1.5943 0.9650 16 6 5.4359 2.0880 2.1019 17 6 5.7108 1.2568 3.1717 18 6 6.5017 1.7077 4.2118 19 6 7.0136 2.9914 4.1847 20 6 7.8764 3.4827 5.3183 21 6 6.7341 3.8246 3.1176 22 6 5.9434 3.3736 2.0772 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2163 0.0758 -3.4875 29 1 4.8795 2.0896 0.0418 30 1 4.7034 0.5170 0.8566 31 1 5.3108 0.2538 3.1929 32 1 6.7201 1.0567 5.0455 33 1 8.9211 3.2573 5.1039 34 1 7.7525 4.5600 5.4288 35 1 7.5798 2.9863 6.2423 36 1 7.1337 4.8276 3.0965 37 1 5.7252 4.0244 1.2434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288859979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:32 Heat of formation + Delta-G solvation = -71.492432 kcal Electronic energy + Delta-G solvation = -20527.558226 eV Core-core repulsion = 17395.991986 eV Total energy + Delta-G solvation = -3131.566240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.38206 -37.95216 -37.63731 -36.44417 -34.85303 -33.68187 -31.92716 -31.01512 -30.28437 -26.81100 -25.91494 -23.72435 -23.32640 -21.88714 -20.24370 -18.84887 -18.38051 -17.50423 -16.85622 -16.56942 -16.53760 -16.10258 -15.99630 -15.30054 -14.72305 -14.58238 -14.39986 -14.07751 -13.87398 -13.73597 -13.62676 -13.12701 -13.09077 -12.88500 -12.73286 -12.68741 -12.60127 -12.59060 -12.20297 -12.14107 -11.96234 -11.91086 -11.63508 -11.48442 -11.15814 -9.95551 -9.81668 -9.34892 -8.37073 -5.99482 -0.35357 0.37889 0.41797 1.48509 1.52757 1.64546 2.19042 2.50763 2.72473 2.85420 3.32102 3.54070 3.71161 3.87814 4.03269 4.06089 4.24717 4.37403 4.49114 4.55705 4.64031 4.70422 4.76002 4.79615 4.86104 4.95063 4.99712 5.09745 5.25169 5.25705 5.35612 5.39654 5.57160 5.60043 5.60481 5.75450 6.03353 6.42520 6.79084 7.28399 8.52961 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.005021 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.358813 B = 5574.822754 C = 5994.024444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.102 3.898 3 N -0.812 5.812 4 C -0.265 4.265 5 H 0.097 0.903 6 C 0.012 3.988 7 N -0.839 5.839 8 Si 0.979 3.021 9 H -0.268 1.268 10 H -0.266 1.266 11 H -0.266 1.266 12 S 2.473 3.527 13 O -1.021 7.021 14 O -1.014 7.014 15 C -0.600 4.600 16 C -0.102 4.102 17 C -0.134 4.134 18 C -0.121 4.121 19 C -0.098 4.098 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.137 4.137 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.284 0.716 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.153 0.847 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.329 0.350 5.515 9.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 N -0.635 5.635 4 C -0.414 4.414 5 H 0.115 0.885 6 C -0.200 4.200 7 N -0.476 5.476 8 Si 0.801 3.199 9 H -0.193 1.193 10 H -0.191 1.191 11 H -0.190 1.190 12 S 2.578 3.422 13 O -1.011 7.011 14 O -1.004 7.004 15 C -0.720 4.720 16 C -0.103 4.103 17 C -0.153 4.153 18 C -0.139 4.139 19 C -0.098 4.098 20 C -0.164 4.164 21 C -0.140 4.140 22 C -0.155 4.155 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.171 0.829 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.168 0.832 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.133 0.586 6.402 9.602 hybrid contribution 0.126 -0.036 -1.262 1.269 sum 7.258 0.549 5.140 8.911 Atomic orbital electron populations 1.21854 0.95610 1.01610 1.00956 1.21584 0.95332 0.82542 1.02873 1.53849 1.54651 1.20730 1.34300 1.19903 1.42499 0.93250 0.85703 0.88530 1.26387 0.96561 0.97219 0.99845 1.69930 1.36487 1.17600 1.23627 0.85145 0.78987 0.78544 0.77241 1.19284 1.19086 1.19019 1.13584 0.77275 0.74295 0.77037 1.93285 1.79791 1.71175 1.56809 1.93283 1.85044 1.34412 1.87633 1.29913 1.28352 1.09734 1.04043 1.19454 0.99687 0.95650 0.95558 1.21349 0.99377 1.00187 0.94401 1.21379 0.97365 0.96531 0.98632 1.20422 0.98509 0.93814 0.97048 1.20833 0.98625 1.02185 0.94759 1.21366 0.98280 1.01005 0.93316 1.21351 0.98546 0.95228 1.00423 0.92967 0.90379 0.94489 0.88276 0.91979 0.90551 0.86100 0.85702 0.85462 0.82938 0.89658 0.90400 0.90266 0.83172 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 9.96 71.98 0.72 -4.92 16 2 C 0.10 4.56 5.78 86.38 0.50 5.06 16 3 N -0.81 -39.88 2.91 -343.44 -1.00 -40.88 16 4 C -0.27 -13.30 8.63 84.03 0.73 -12.58 16 5 H 0.10 5.03 7.26 -2.91 -0.02 5.01 16 6 C 0.01 0.57 4.63 84.86 0.39 0.96 16 7 N -0.84 -38.84 11.06 21.65 0.24 -38.60 16 8 Si 0.98 36.72 29.61 68.60 2.03 38.75 16 9 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 10 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 11 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 12 S 2.47 121.93 5.34 -56.49 -0.30 121.63 16 13 O -1.02 -53.23 16.65 -127.65 -2.13 -55.35 16 14 O -1.01 -55.72 16.82 -127.65 -2.15 -57.86 16 15 C -0.60 -25.33 6.30 71.24 0.45 -24.88 16 16 C -0.10 -4.02 5.14 -19.87 -0.10 -4.12 16 17 C -0.13 -4.73 9.70 22.27 0.22 -4.51 16 18 C -0.12 -3.45 9.70 22.27 0.22 -3.23 16 19 C -0.10 -2.55 5.88 -19.87 -0.12 -2.67 16 20 C -0.11 -1.80 10.01 71.23 0.71 -1.09 16 21 C -0.12 -3.56 9.70 22.27 0.22 -3.34 16 22 C -0.14 -4.97 9.70 22.27 0.22 -4.76 16 23 H 0.05 2.13 7.42 -2.39 -0.02 2.12 16 24 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.10 4.51 5.53 -2.39 -0.01 4.49 16 27 H 0.06 2.65 7.01 -2.39 -0.02 2.63 16 28 H 0.28 12.09 8.31 -92.71 -0.77 11.32 16 29 H 0.12 5.08 8.09 -2.39 -0.02 5.06 16 30 H 0.12 4.93 8.09 -2.39 -0.02 4.91 16 31 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.13 8.09 -2.39 -0.02 1.12 16 35 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 36 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -63.43 323.38 1.89 -61.54 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 1.05 Total: 30.85 kcal Atomic # 6 Polarization: -64.22 SS G_CDS: 4.14 Total: -60.08 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -0.76 Total: -79.48 kcal Atomic # 8 Polarization: -108.94 SS G_CDS: -4.27 Total: -113.22 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Atomic # 16 Polarization: 121.93 SS G_CDS: -0.30 Total: 121.63 kcal Total: -63.43 1.89 -61.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288859979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.951 kcal (2) G-P(sol) polarization free energy of solvation -63.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds