Wall clock time and date at job start Fri Apr 10 2020 14:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47574 * 2 1 4 4 C 1.46502 * 120.00179 * 278.16710 * 3 2 1 5 5 C 1.53004 * 109.46724 * 274.99502 * 4 3 2 6 6 S 1.65605 * 119.99852 * 98.15659 * 3 2 1 7 7 O 1.42097 * 106.40026 * 345.31221 * 6 3 2 8 8 O 1.42094 * 106.40130 * 212.38738 * 6 3 2 9 9 C 1.76199 * 107.21179 * 98.84715 * 6 3 2 10 10 C 1.37646 * 120.12367 * 116.54831 * 9 6 3 11 11 C 1.38611 * 120.24392 * 180.31489 * 10 9 6 12 12 C 1.38652 * 120.50522 * 359.67654 * 11 10 9 13 13 C 1.37603 * 120.24569 * 359.97438 * 12 11 10 14 14 C 1.40690 * 120.13210 * 296.24136 * 9 6 3 15 15 C 1.41400 * 120.24551 * 359.97438 * 14 9 6 16 16 H 1.08007 * 119.99555 * 320.78722 * 15 14 9 17 17 C 1.39942 * 120.00048 * 140.78099 * 15 14 9 18 18 N 1.30821 * 119.99744 * 147.74953 * 17 15 14 19 19 Si 1.86797 * 120.00185 * 327.75058 * 17 15 14 20 20 H 1.48501 * 109.47020 * 271.49375 * 19 17 15 21 21 H 1.48503 * 109.47031 * 31.49244 * 19 17 15 22 22 H 1.48501 * 109.47169 * 151.49439 * 19 17 15 23 23 H 1.08997 * 109.47129 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46795 * 299.99598 * 1 2 3 25 25 H 1.09003 * 109.47202 * 59.99310 * 1 2 3 26 26 H 1.09000 * 109.46795 * 240.00402 * 2 1 3 27 27 H 1.09003 * 109.47575 * 120.00300 * 2 1 3 28 28 H 1.08996 * 109.46993 * 34.99153 * 4 3 2 29 29 H 1.09000 * 109.47257 * 154.99476 * 4 3 2 30 30 H 1.08994 * 109.46827 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.46678 * 299.99790 * 5 4 3 32 32 H 1.09000 * 109.47275 * 59.99985 * 5 4 3 33 33 H 1.07999 * 119.87600 * 0.02562 * 10 9 6 34 34 H 1.08001 * 119.75043 * 179.69257 * 11 10 9 35 35 H 1.07998 * 119.88157 * 180.02562 * 12 11 10 36 36 H 1.08006 * 120.12465 * 180.02562 * 13 12 11 37 37 H 0.97000 * 120.00157 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0927 2.1319 -1.2559 5 6 3.4151 1.8194 -1.9593 6 16 2.4863 2.0940 1.4197 7 8 1.9846 1.2729 2.4653 8 8 2.1737 3.4747 1.2975 9 6 4.2431 1.9870 1.5026 10 6 5.0055 3.1330 1.5073 11 6 6.3880 3.0516 1.5659 12 6 7.0184 1.8182 1.6271 13 6 6.2759 0.6597 1.6308 14 6 4.8717 0.7302 1.5707 15 6 4.0985 -0.4537 1.5736 16 1 3.1708 -0.4913 2.1255 17 6 4.5352 -1.5764 0.8615 18 7 4.2602 -2.7774 1.3011 19 14 5.5106 -1.3601 -0.7168 20 1 4.5762 -1.2631 -1.8669 21 1 6.3212 -0.1187 -0.6315 22 1 6.4100 -2.5264 -0.9067 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.2618 1.8452 -1.9003 29 1 2.0371 3.1998 -1.0447 30 1 3.4702 2.3776 -2.8938 31 1 4.2460 2.1062 -1.3148 32 1 3.4707 0.7515 -2.1705 33 1 4.5250 4.0991 1.4605 34 1 6.9787 3.9558 1.5641 35 1 8.0962 1.7665 1.6728 36 1 6.7690 -0.3000 1.6789 37 1 4.5632 -3.5557 0.8077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619571628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:14 Heat of formation + Delta-G solvation = -77.780931 kcal Electronic energy + Delta-G solvation = -21960.672153 eV Core-core repulsion = 18828.833223 eV Total energy + Delta-G solvation = -3131.838929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.51834 -38.16132 -37.90615 -36.67641 -35.59300 -32.72863 -32.40705 -31.68419 -29.57957 -27.18972 -24.54206 -23.59819 -22.86565 -22.78906 -19.69771 -19.39678 -18.70301 -17.92707 -17.15747 -17.07405 -16.17306 -15.83254 -15.31779 -15.02926 -14.96546 -14.75538 -14.58538 -14.19245 -13.97709 -13.71156 -13.58545 -13.12787 -13.05135 -12.92565 -12.90151 -12.73120 -12.56569 -12.51676 -12.38033 -12.10389 -11.81643 -11.66922 -11.44607 -11.09634 -11.01303 -9.95386 -9.74927 -9.41818 -8.99538 -6.61337 -0.18179 0.40821 0.83323 1.29544 1.37467 1.45373 2.14480 2.25568 2.47970 2.98316 3.31995 3.70126 3.95783 4.25022 4.32894 4.37618 4.38570 4.55579 4.58270 4.61505 4.65708 4.78464 4.82765 4.92096 4.99756 5.07323 5.17042 5.26369 5.35961 5.44768 5.46693 5.48540 5.60632 5.80228 5.90286 5.96262 6.14383 6.37444 6.61768 6.77300 8.04606 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.011935 C = 0.008864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.608114 B = 2345.472587 C = 3158.057741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.985 5.985 4 C 0.111 3.889 5 C -0.179 4.179 6 S 2.711 3.289 7 O -1.003 7.003 8 O -1.006 7.006 9 C -0.777 4.777 10 C -0.008 4.008 11 C -0.243 4.243 12 C -0.055 4.055 13 C -0.225 4.225 14 C 0.155 3.845 15 C -0.508 4.508 16 H 0.099 0.901 17 C 0.087 3.913 18 N -0.802 5.802 19 Si 0.908 3.092 20 H -0.243 1.243 21 H -0.235 1.235 22 H -0.270 1.270 23 H 0.077 0.923 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 4.186 -8.925 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.013 4.013 3 N -0.823 5.823 4 C -0.013 4.013 5 C -0.238 4.238 6 S 2.809 3.191 7 O -0.993 6.993 8 O -0.997 6.997 9 C -0.870 4.870 10 C -0.027 4.027 11 C -0.263 4.263 12 C -0.073 4.073 13 C -0.245 4.245 14 C 0.151 3.849 15 C -0.534 4.534 16 H 0.116 0.884 17 C -0.136 4.136 18 N -0.424 5.424 19 Si 0.728 3.272 20 H -0.167 1.167 21 H -0.157 1.157 22 H -0.195 1.195 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.244 4.250 -8.308 9.414 hybrid contribution 1.143 -0.676 -0.301 1.361 sum -0.101 3.573 -8.609 9.322 Atomic orbital electron populations 1.22190 0.95143 1.02897 1.02140 1.21496 0.94581 0.81168 1.04075 1.57187 1.79022 1.23444 1.22636 1.21480 0.99152 0.96046 0.84648 1.22325 0.97733 1.02264 1.01461 1.00659 0.74327 0.71426 0.72738 1.93449 1.80639 1.69580 1.55659 1.93405 1.85034 1.34202 1.87050 1.30326 1.24060 0.99866 1.32749 1.20690 0.94818 0.95926 0.91287 1.20976 0.93949 0.97669 1.13694 1.21284 0.99661 0.92572 0.93781 1.21445 0.94227 0.97650 1.11180 1.17154 0.92444 0.90594 0.84745 1.19924 1.09385 0.94744 1.29394 0.88371 1.26531 0.93463 0.93258 1.00329 1.69854 1.35737 1.00448 1.36346 0.86254 0.80499 0.80785 0.79688 1.16708 1.15731 1.19456 0.90463 0.94047 0.90474 0.90379 0.90257 0.87477 0.89568 0.89028 0.93944 0.92962 0.85707 0.84748 0.84910 0.88091 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 10.21 71.98 0.74 -4.10 16 2 C 0.11 4.01 5.43 86.38 0.47 4.48 16 3 N -0.99 -36.07 2.72 -515.77 -1.40 -37.47 16 4 C 0.11 3.20 6.40 86.38 0.55 3.75 16 5 C -0.18 -5.10 10.24 71.98 0.74 -4.36 16 6 S 2.71 120.08 5.06 -56.49 -0.29 119.80 16 7 O -1.00 -51.12 14.68 -128.00 -1.88 -53.00 16 8 O -1.01 -44.87 15.74 -128.00 -2.01 -46.88 16 9 C -0.78 -35.53 5.61 22.73 0.13 -35.40 16 10 C -0.01 -0.31 9.53 22.22 0.21 -0.10 16 11 C -0.24 -9.13 10.05 22.46 0.23 -8.91 16 12 C -0.05 -2.11 10.02 22.22 0.22 -1.89 16 13 C -0.23 -10.08 7.07 22.73 0.16 -9.92 16 14 C 0.15 7.48 4.74 -21.29 -0.10 7.38 16 15 C -0.51 -25.67 6.39 23.46 0.15 -25.52 16 16 H 0.10 5.53 4.71 -2.91 -0.01 5.52 16 17 C 0.09 4.08 5.10 85.26 0.43 4.52 16 18 N -0.80 -38.92 13.93 21.83 0.30 -38.62 16 19 Si 0.91 35.88 26.78 68.60 1.84 37.72 16 20 H -0.24 -8.84 6.80 99.48 0.68 -8.17 16 21 H -0.23 -9.48 5.79 99.48 0.58 -8.90 16 22 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 23 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.08 1.83 7.88 -2.39 -0.02 1.81 16 26 H 0.08 2.55 8.10 -2.39 -0.02 2.53 16 27 H 0.08 3.46 4.43 -2.39 -0.01 3.45 16 28 H 0.11 2.36 7.85 -2.39 -0.02 2.34 16 29 H 0.09 2.45 7.06 -2.39 -0.02 2.43 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.40 7.79 -2.39 -0.02 1.38 16 32 H 0.05 1.55 7.69 -2.39 -0.02 1.53 16 33 H 0.13 4.74 7.33 -2.91 -0.02 4.71 16 34 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 36 H 0.10 4.44 6.95 -2.91 -0.02 4.42 16 37 H 0.30 12.91 8.30 -92.71 -0.77 12.14 16 Total: -1.00 -60.84 308.01 1.39 -59.45 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.91 Total: 29.09 kcal Atomic # 6 Polarization: -74.01 SS G_CDS: 3.93 Total: -70.08 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.10 Total: -76.09 kcal Atomic # 8 Polarization: -95.99 SS G_CDS: -3.89 Total: -99.89 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 1.84 Total: 37.72 kcal Atomic # 16 Polarization: 120.08 SS G_CDS: -0.29 Total: 119.80 kcal Total: -60.84 1.39 -59.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619571628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.332 kcal (2) G-P(sol) polarization free energy of solvation -60.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds