Wall clock time and date at job start Fri Apr 10 2020 15:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45205 * 109.47050 * 2 1 4 4 C 1.34225 * 117.00134 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99812 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00396 * 179.97438 * 4 3 2 7 7 N 1.46894 * 109.47560 * 180.02562 * 6 4 3 8 8 C 1.46907 * 111.00281 * 190.00369 * 7 6 4 9 9 C 1.50699 * 109.46924 * 75.78707 * 8 7 6 10 10 H 1.08000 * 120.00614 * 4.97409 * 9 8 7 11 11 C 1.37878 * 119.99492 * 184.97338 * 9 8 7 12 12 N 1.31518 * 120.00219 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99988 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46985 * 89.99951 * 13 11 9 15 15 H 1.48494 * 109.47238 * 209.99983 * 13 11 9 16 16 H 1.48502 * 109.47089 * 330.00428 * 13 11 9 17 17 C 1.46895 * 111.00048 * 66.04542 * 7 6 4 18 18 C 1.50700 * 109.47062 * 198.77044 * 17 7 6 19 19 C 1.33389 * 125.20178 * 83.99871 * 18 17 7 20 20 C 1.38431 * 114.92133 * 179.97438 * 19 18 17 21 21 C 1.33392 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75885 * 125.20508 * 263.68793 * 18 17 7 23 23 H 1.08997 * 109.46849 * 59.99554 * 1 2 3 24 24 H 1.09000 * 109.46690 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46769 * 299.99850 * 1 2 3 26 26 H 1.09000 * 109.47077 * 240.00543 * 2 1 3 27 27 H 1.08996 * 109.47114 * 119.99973 * 2 1 3 28 28 H 1.09006 * 109.47122 * 60.00187 * 6 4 3 29 29 H 1.09002 * 109.47032 * 300.00384 * 6 4 3 30 30 H 1.08998 * 109.47204 * 195.79005 * 8 7 6 31 31 H 1.08997 * 109.46544 * 315.78673 * 8 7 6 32 32 H 0.97005 * 119.99891 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.46979 * 318.77207 * 17 7 6 34 34 H 1.08999 * 109.46956 * 78.77323 * 17 7 6 35 35 H 1.07997 * 122.54315 * 359.95175 * 19 18 17 36 36 H 1.07998 * 122.53961 * 180.02562 * 20 19 18 37 37 H 1.07995 * 125.19955 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9375 -0.0012 7 7 5.3877 2.8606 -0.0023 8 6 5.9843 4.1819 0.2353 9 6 5.8580 4.5349 1.6950 10 1 5.4555 3.8147 2.3919 11 6 6.2565 5.7773 2.1406 12 7 6.7462 6.6545 1.2918 13 14 6.0994 6.2153 3.9498 14 1 7.3462 5.8349 4.6612 15 1 5.8770 7.6770 4.0878 16 1 4.9502 5.4819 4.5386 17 6 5.8833 2.2769 -1.2559 18 6 7.2958 1.7900 -1.0592 19 6 7.6369 0.6062 -0.5476 20 6 8.9996 0.3778 -0.4637 21 6 9.7652 1.3759 -0.9076 22 16 8.7468 2.6923 -1.4764 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.5851 3.4699 0.8889 29 1 3.5844 3.4694 -0.8912 30 1 7.0378 4.1603 -0.0435 31 1 5.4647 4.9284 -0.3653 32 1 7.0269 7.5285 1.6055 33 1 5.2471 1.4399 -1.5434 34 1 5.8656 3.0331 -2.0407 35 1 6.9053 -0.1190 -0.2231 36 1 9.4117 -0.5393 -0.0694 37 1 10.8451 1.3743 -0.9197 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204019114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:32 Heat of formation + Delta-G solvation = -62.454325 kcal Electronic energy + Delta-G solvation = -20095.389902 eV Core-core repulsion = 16964.215584 eV Total energy + Delta-G solvation = -3131.174318 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53087 -39.19110 -38.01687 -37.12304 -34.67586 -32.73826 -31.73694 -29.92838 -28.18184 -26.06582 -24.40206 -23.94199 -22.75515 -21.57528 -19.94570 -18.76555 -18.59448 -18.03433 -17.53841 -17.37004 -16.69531 -16.26874 -15.90094 -15.46257 -15.03901 -14.86022 -14.11357 -14.04488 -13.71345 -13.54856 -13.48018 -13.33003 -13.31821 -12.96264 -12.78899 -12.74471 -12.46986 -12.44453 -12.28731 -11.98576 -11.56584 -11.46198 -11.45341 -11.15652 -10.57881 -9.51388 -9.28624 -9.14623 -8.16739 -6.26019 0.17450 0.82618 1.20983 1.22142 1.42482 1.43667 1.53946 1.62891 1.95601 2.42414 3.16013 3.30304 3.80137 3.94406 4.03814 4.13018 4.14723 4.28762 4.37856 4.39302 4.49632 4.52498 4.77120 4.80985 4.86175 4.95312 5.12489 5.16419 5.20939 5.31880 5.47597 5.52867 5.66286 5.71475 6.04984 6.14732 6.46226 6.84420 6.87118 7.42671 8.93032 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.009551 B = 0.007170 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.933185 B = 3904.134790 C = 6237.853031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.364 6.364 4 C 0.471 3.529 5 O -0.514 6.514 6 C 0.070 3.930 7 N -0.528 5.528 8 C 0.205 3.795 9 C -0.521 4.521 10 H 0.057 0.943 11 C 0.011 3.989 12 N -0.928 5.928 13 Si 0.960 3.040 14 H -0.279 1.279 15 H -0.280 1.280 16 H -0.265 1.265 17 C 0.125 3.875 18 C -0.166 4.166 19 C -0.130 4.130 20 C -0.139 4.139 21 C -0.214 4.214 22 S 0.062 5.938 23 H 0.069 0.931 24 H 0.102 0.898 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.026 0.974 31 H -0.021 1.021 32 H 0.264 0.736 33 H 0.096 0.904 34 H 0.034 0.966 35 H 0.137 0.863 36 H 0.164 0.836 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 -12.402 -5.419 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.314 3.686 5 O -0.402 6.402 6 C -0.059 4.059 7 N -0.254 5.254 8 C 0.080 3.920 9 C -0.560 4.560 10 H 0.075 0.925 11 C -0.188 4.188 12 N -0.568 5.568 13 Si 0.786 3.214 14 H -0.204 1.204 15 H -0.206 1.206 16 H -0.190 1.190 17 C -0.004 4.004 18 C -0.284 4.284 19 C -0.161 4.161 20 C -0.170 4.170 21 C -0.350 4.350 22 S 0.325 5.675 23 H 0.088 0.912 24 H 0.120 0.880 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.044 0.956 31 H -0.003 1.003 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.155 0.845 36 H 0.182 0.818 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.840 -11.430 -5.689 13.654 hybrid contribution -0.291 -0.348 0.869 0.980 sum -5.131 -11.778 -4.820 13.721 Atomic orbital electron populations 1.21821 0.90293 1.04384 1.03660 1.23293 0.97120 0.79156 1.02488 1.86508 1.23696 1.33957 1.83962 1.23727 0.80647 0.92502 0.71750 1.90589 1.60716 1.43409 1.45533 1.21521 0.89028 0.90134 1.05223 1.61692 1.03789 1.26526 1.33347 1.19581 0.94295 0.82215 0.95952 1.21367 1.41814 0.98764 0.94030 0.92500 1.25749 0.94882 0.96127 1.02053 1.70063 1.43557 1.06984 1.36181 0.85520 0.78664 0.77299 0.79963 1.20442 1.20573 1.18975 1.20571 0.90851 0.98558 0.90454 1.24338 0.97814 0.98074 1.08163 1.20257 0.96928 0.97454 1.01431 1.20398 0.92292 1.01271 1.03024 1.25884 1.04190 0.96412 1.08494 1.84465 0.98153 1.21803 1.63035 0.91175 0.87953 0.91524 0.91102 0.91683 0.86519 0.89908 0.95608 1.00330 0.92687 0.88648 0.94809 0.84505 0.81820 0.79400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.29 71.98 0.74 -1.42 16 2 C 0.05 1.17 6.19 71.98 0.45 1.62 16 3 O -0.36 -10.59 10.22 -51.37 -0.53 -11.11 16 4 C 0.47 16.17 7.49 71.23 0.53 16.70 16 5 O -0.51 -19.53 14.27 21.95 0.31 -19.22 16 6 C 0.07 2.61 5.38 85.56 0.46 3.07 16 7 N -0.53 -23.10 4.09 -909.97 -3.72 -26.82 16 8 C 0.20 10.62 4.57 85.56 0.39 11.01 16 9 C -0.52 -29.13 8.56 25.60 0.22 -28.91 16 10 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 11 C 0.01 0.59 5.46 84.65 0.46 1.06 16 12 N -0.93 -54.56 13.29 21.45 0.28 -54.28 16 13 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 C 0.12 4.85 4.98 85.56 0.43 5.27 16 18 C -0.17 -6.38 5.44 24.59 0.13 -6.25 16 19 C -0.13 -4.58 10.05 21.22 0.21 -4.36 16 20 C -0.14 -4.16 10.18 21.22 0.22 -3.94 16 21 C -0.21 -6.35 11.23 66.72 0.75 -5.60 16 22 S 0.06 2.25 22.14 -56.49 -1.25 1.00 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 27 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 28 H 0.12 4.59 7.44 -2.38 -0.02 4.57 16 29 H 0.08 2.78 8.12 -2.39 -0.02 2.76 16 30 H 0.03 1.43 6.17 -2.39 -0.01 1.41 16 31 H -0.02 -1.16 8.00 -2.39 -0.02 -1.18 16 32 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 33 H 0.10 3.49 5.84 -2.39 -0.01 3.48 16 34 H 0.03 1.29 8.01 -2.39 -0.02 1.27 16 35 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 36 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 37 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -65.94 329.25 3.18 -62.77 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.06 Total: 13.33 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 4.99 Total: -11.77 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -3.43 Total: -81.10 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.21 Total: -30.33 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.25 Total: 1.00 kcal Total: -65.94 3.18 -62.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204019114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.314 kcal (2) G-P(sol) polarization free energy of solvation -65.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds