Wall clock time and date at job start Fri Apr 10 2020 15:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45207 * 109.46817 * 2 1 4 4 C 1.34230 * 116.99595 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99541 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47128 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.46949 * 54.55406 * 7 6 4 9 9 C 1.50696 * 109.47493 * 174.55998 * 7 6 4 10 10 H 1.07995 * 120.00005 * 95.26640 * 9 7 6 11 11 C 1.37876 * 120.00017 * 275.27439 * 9 7 6 12 12 N 1.31509 * 120.00196 * 185.30304 * 11 9 7 13 13 Si 1.86807 * 119.99912 * 5.30345 * 11 9 7 14 14 H 1.48493 * 109.47121 * 94.71077 * 13 11 9 15 15 H 1.48498 * 109.46727 * 214.71220 * 13 11 9 16 16 H 1.48502 * 109.46868 * 334.70915 * 13 11 9 17 17 O 1.42898 * 109.47138 * 294.56444 * 7 6 4 18 18 C 1.35959 * 117.00490 * 156.74713 * 17 7 6 19 19 C 1.39185 * 120.43838 * 355.68859 * 18 17 7 20 20 C 1.38457 * 118.39928 * 179.73694 * 19 18 17 21 21 C 1.38553 * 119.19999 * 0.55806 * 20 19 18 22 22 F 1.35097 * 119.58946 * 179.68110 * 21 20 19 23 23 N 1.31996 * 120.81737 * 359.70021 * 21 20 19 24 24 C 1.31919 * 121.74465 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.46941 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47117 * 299.99793 * 1 2 3 27 27 H 1.08998 * 109.47386 * 59.99461 * 1 2 3 28 28 H 1.08998 * 109.47117 * 240.00207 * 2 1 3 29 29 H 1.09000 * 109.47567 * 119.99784 * 2 1 3 30 30 H 1.08994 * 109.47165 * 300.00094 * 6 4 3 31 31 H 1.08999 * 109.46937 * 60.00534 * 6 4 3 32 32 H 0.97005 * 120.00038 * 180.02562 * 12 11 9 33 33 H 1.07998 * 120.79621 * 359.96960 * 19 18 17 34 34 H 1.08005 * 120.39408 * 180.25684 * 20 19 18 35 35 H 1.08004 * 119.63887 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8576 0.0010 8 1 5.7801 2.2438 -0.8365 9 6 6.0241 4.2438 -0.1330 10 1 6.3144 4.7956 0.7488 11 6 6.1801 4.8077 -1.3815 12 7 6.7774 5.9726 -1.5069 13 14 5.5429 3.9171 -2.8949 14 1 4.1823 4.4123 -3.2244 15 1 6.4535 4.1727 -4.0397 16 1 5.4864 2.4582 -2.6235 17 8 5.8950 2.2728 1.2261 18 6 7.1210 1.6852 1.2189 19 6 7.8495 1.5881 0.0369 20 6 9.0958 0.9866 0.0790 21 6 9.5684 0.4943 1.2848 22 9 10.7806 -0.1000 1.3336 23 7 8.8486 0.5983 2.3863 24 6 7.6595 1.1695 2.3871 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.5849 3.4699 -0.8887 31 1 3.5843 3.4694 0.8912 32 1 6.8868 6.3695 -2.3853 33 1 7.4536 1.9761 -0.8901 34 1 9.6903 0.8978 -0.8184 35 1 7.0998 1.2367 3.3084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226698945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:13 Heat of formation + Delta-G solvation = -132.665878 kcal Electronic energy + Delta-G solvation = -22270.667746 eV Core-core repulsion = 18570.235650 eV Total energy + Delta-G solvation = -3700.432095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.51965 -40.31200 -39.80906 -37.64254 -36.23147 -33.47232 -32.02974 -31.90082 -31.24226 -29.11857 -26.77883 -23.79389 -23.44126 -22.85374 -21.46617 -20.13955 -18.11911 -17.64984 -17.30812 -17.05746 -16.81847 -16.35599 -15.81498 -15.62707 -14.70258 -14.42208 -14.16758 -14.08947 -13.61096 -13.40287 -13.20206 -12.88884 -12.75403 -12.72298 -12.27444 -12.21410 -12.00652 -11.67031 -11.54093 -11.38917 -10.99994 -10.42177 -10.40319 -10.10430 -10.03938 -9.58498 -9.41350 -9.29309 -9.00770 -7.66169 -6.50218 -4.57930 1.41671 1.62788 2.60490 2.91311 2.98042 3.02643 3.08877 3.78317 3.98589 4.07942 4.14076 4.76335 4.89486 4.92882 4.93572 5.08648 5.20435 5.24357 5.36075 5.59163 5.60796 5.70729 5.79708 5.80982 5.89223 5.98227 6.18025 6.37004 6.38868 6.63732 6.75049 6.87878 7.06954 7.77771 8.01824 8.11427 8.17599 8.62723 9.06657 10.61026 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.006722 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.647535 B = 4164.592008 C = 5790.434844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.365 6.365 4 C 0.455 3.545 5 O -0.506 6.506 6 C -0.107 4.107 7 C 0.188 3.812 8 H 0.052 0.948 9 C -0.550 4.550 10 H 0.091 0.909 11 C 0.088 3.912 12 N -0.870 5.870 13 Si 0.846 3.154 14 H -0.265 1.265 15 H -0.275 1.275 16 H -0.256 1.256 17 O -0.298 6.298 18 C 0.125 3.875 19 C -0.125 4.125 20 C -0.151 4.151 21 C 0.238 3.762 22 F -0.125 7.125 23 N -0.481 5.481 24 C 0.084 3.916 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.272 0.728 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.069 -8.816 0.565 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.282 6.282 4 C 0.298 3.702 5 O -0.393 6.393 6 C -0.145 4.145 7 C 0.133 3.867 8 H 0.069 0.931 9 C -0.587 4.587 10 H 0.109 0.891 11 C -0.118 4.118 12 N -0.505 5.505 13 Si 0.672 3.328 14 H -0.190 1.190 15 H -0.200 1.200 16 H -0.181 1.181 17 O -0.209 6.209 18 C 0.075 3.925 19 C -0.151 4.151 20 C -0.172 4.172 21 C 0.084 3.916 22 F -0.105 7.105 23 N -0.195 5.195 24 C -0.074 4.074 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.083 0.917 33 H 0.170 0.830 34 H 0.160 0.840 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.576 -9.286 1.330 11.456 hybrid contribution -0.360 -0.139 -1.952 1.990 sum -6.936 -9.425 -0.623 11.718 Atomic orbital electron populations 1.21789 0.93001 1.02588 1.03435 1.22937 0.95081 0.81210 1.02335 1.86563 1.25578 1.31603 1.84505 1.24586 0.79930 0.93880 0.71799 1.90626 1.60254 1.43292 1.45090 1.22173 0.96893 0.89207 1.06221 1.20559 0.88595 0.94790 0.82776 0.93072 1.21254 1.43424 0.98492 0.95484 0.89121 1.24899 0.93699 0.94836 0.98382 1.69858 1.39253 1.16591 1.24750 0.87341 0.80437 0.81214 0.83838 1.18967 1.20011 1.18063 1.85943 1.28479 1.67826 1.38695 1.19927 0.86779 0.91755 0.94065 1.21751 0.94228 0.99449 0.99673 1.21609 0.97298 1.00485 0.97799 1.17860 0.83330 0.99721 0.90704 1.91542 1.40320 1.81668 1.96950 1.66894 1.06723 1.16484 1.29443 1.21682 0.90520 0.98258 0.96988 0.90603 0.91503 0.91608 0.91642 0.91429 0.87084 0.86724 0.91735 0.82988 0.84008 0.81545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.99 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.76 10.22 -39.26 -0.40 -6.16 16 4 C 0.45 8.32 7.84 36.01 0.28 8.60 16 5 O -0.51 -10.38 15.18 -23.94 -0.36 -10.74 16 6 C -0.11 -2.01 5.26 -27.88 -0.15 -2.15 16 7 C 0.19 4.06 0.77 -27.88 -0.02 4.03 16 8 H 0.05 1.14 3.30 -51.93 -0.17 0.97 16 9 C -0.55 -13.58 8.77 -34.44 -0.30 -13.88 16 10 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 11 C 0.09 2.22 5.47 -17.82 -0.10 2.12 16 12 N -0.87 -23.63 13.96 55.43 0.77 -22.85 16 13 Si 0.85 18.21 26.00 -169.99 -4.42 13.79 16 14 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.26 -5.32 5.91 56.52 0.33 -4.98 16 17 O -0.30 -6.33 9.07 -33.61 -0.30 -6.63 16 18 C 0.12 2.52 6.57 -39.10 -0.26 2.27 16 19 C -0.12 -2.46 8.94 -39.15 -0.35 -2.81 16 20 C -0.15 -2.64 10.08 -39.38 -0.40 -3.04 16 21 C 0.24 4.37 8.41 -17.36 -0.15 4.22 16 22 F -0.13 -2.19 17.29 2.25 0.04 -2.15 16 23 N -0.48 -9.15 10.37 -13.49 -0.14 -9.29 16 24 C 0.08 1.54 11.13 -17.38 -0.19 1.35 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.11 2.00 6.35 -51.93 -0.33 1.67 16 31 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 32 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.15 3.08 5.92 -52.49 -0.31 2.77 16 34 H 0.14 2.06 8.06 -52.48 -0.42 1.63 16 35 H 0.17 2.61 8.06 -52.48 -0.42 2.19 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -28.63 308.81 -5.00 -33.63 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -3.82 Total: 5.05 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.02 Total: 0.70 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.63 Total: -32.14 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -1.07 Total: -23.53 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -4.42 Total: 13.79 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.63 -5.00 -33.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226698945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.039 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds