Wall clock time and date at job start Fri Apr 10 2020 15:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45207 * 109.46817 * 2 1 4 4 C 1.34230 * 116.99595 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99541 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47128 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.46949 * 54.55406 * 7 6 4 9 9 C 1.50696 * 109.47493 * 174.55998 * 7 6 4 10 10 H 1.07995 * 120.00005 * 95.26640 * 9 7 6 11 11 C 1.37876 * 120.00017 * 275.27439 * 9 7 6 12 12 N 1.31509 * 120.00196 * 185.30304 * 11 9 7 13 13 Si 1.86807 * 119.99912 * 5.30345 * 11 9 7 14 14 H 1.48493 * 109.47121 * 94.71077 * 13 11 9 15 15 H 1.48498 * 109.46727 * 214.71220 * 13 11 9 16 16 H 1.48502 * 109.46868 * 334.70915 * 13 11 9 17 17 O 1.42898 * 109.47138 * 294.56444 * 7 6 4 18 18 C 1.35959 * 117.00490 * 156.74713 * 17 7 6 19 19 C 1.39185 * 120.43838 * 355.68859 * 18 17 7 20 20 C 1.38457 * 118.39928 * 179.73694 * 19 18 17 21 21 C 1.38553 * 119.19999 * 0.55806 * 20 19 18 22 22 F 1.35097 * 119.58946 * 179.68110 * 21 20 19 23 23 N 1.31996 * 120.81737 * 359.70021 * 21 20 19 24 24 C 1.31919 * 121.74465 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.46941 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47117 * 299.99793 * 1 2 3 27 27 H 1.08998 * 109.47386 * 59.99461 * 1 2 3 28 28 H 1.08998 * 109.47117 * 240.00207 * 2 1 3 29 29 H 1.09000 * 109.47567 * 119.99784 * 2 1 3 30 30 H 1.08994 * 109.47165 * 300.00094 * 6 4 3 31 31 H 1.08999 * 109.46937 * 60.00534 * 6 4 3 32 32 H 0.97005 * 120.00038 * 180.02562 * 12 11 9 33 33 H 1.07998 * 120.79621 * 359.96960 * 19 18 17 34 34 H 1.08005 * 120.39408 * 180.25684 * 20 19 18 35 35 H 1.08004 * 119.63887 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8576 0.0010 8 1 5.7801 2.2438 -0.8365 9 6 6.0241 4.2438 -0.1330 10 1 6.3144 4.7956 0.7488 11 6 6.1801 4.8077 -1.3815 12 7 6.7774 5.9726 -1.5069 13 14 5.5429 3.9171 -2.8949 14 1 4.1823 4.4123 -3.2244 15 1 6.4535 4.1727 -4.0397 16 1 5.4864 2.4582 -2.6235 17 8 5.8950 2.2728 1.2261 18 6 7.1210 1.6852 1.2189 19 6 7.8495 1.5881 0.0369 20 6 9.0958 0.9866 0.0790 21 6 9.5684 0.4943 1.2848 22 9 10.7806 -0.1000 1.3336 23 7 8.8486 0.5983 2.3863 24 6 7.6595 1.1695 2.3871 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.5849 3.4699 -0.8887 31 1 3.5843 3.4694 0.8912 32 1 6.8868 6.3695 -2.3853 33 1 7.4536 1.9761 -0.8901 34 1 9.6903 0.8978 -0.8184 35 1 7.0998 1.2367 3.3084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226698945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:13 Heat of formation + Delta-G solvation = -149.631422 kcal Electronic energy + Delta-G solvation = -22271.403427 eV Core-core repulsion = 18570.235650 eV Total energy + Delta-G solvation = -3701.167777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.95264 -41.77485 -41.24755 -39.18440 -37.58775 -35.28664 -33.51005 -33.34597 -32.43937 -30.62044 -28.48279 -25.37971 -24.76220 -24.09571 -22.90367 -21.61721 -19.77167 -19.26450 -18.82408 -18.54204 -18.36262 -17.60738 -17.20618 -17.07748 -16.39261 -15.93311 -15.58631 -15.36950 -15.15344 -14.90767 -14.57922 -14.50012 -14.17131 -13.83039 -13.70577 -13.50998 -13.44125 -13.06544 -12.88285 -12.64706 -12.48380 -12.09854 -11.85582 -11.56876 -11.50894 -11.26939 -10.96888 -10.88307 -10.79542 -9.21195 -8.44415 -6.57121 -0.03901 0.09752 1.17658 1.25570 1.31149 1.36806 1.69117 2.17520 2.23089 2.58701 2.66606 2.89735 3.49963 3.67926 3.77925 3.93089 4.01014 4.10250 4.12952 4.20071 4.24377 4.35567 4.50799 4.68119 4.80714 4.86047 4.90183 4.93591 5.11537 5.17147 5.20849 5.42049 5.46642 5.99697 6.29860 6.53817 6.66243 6.75227 7.12370 8.70873 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.006722 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.647535 B = 4164.592008 C = 5790.434844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.463 3.537 5 O -0.531 6.531 6 C -0.108 4.108 7 C 0.194 3.806 8 H 0.048 0.952 9 C -0.547 4.547 10 H 0.047 0.953 11 C 0.045 3.955 12 N -0.919 5.919 13 Si 0.902 3.098 14 H -0.246 1.246 15 H -0.276 1.276 16 H -0.245 1.245 17 O -0.306 6.306 18 C 0.099 3.901 19 C -0.139 4.139 20 C -0.141 4.141 21 C 0.235 3.765 22 F -0.119 7.119 23 N -0.492 5.492 24 C 0.089 3.911 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.275 0.725 33 H 0.144 0.856 34 H 0.174 0.826 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.349 -10.429 -0.080 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 O -0.279 6.279 4 C 0.307 3.693 5 O -0.420 6.420 6 C -0.146 4.146 7 C 0.139 3.861 8 H 0.065 0.935 9 C -0.585 4.585 10 H 0.065 0.935 11 C -0.158 4.158 12 N -0.556 5.556 13 Si 0.725 3.275 14 H -0.170 1.170 15 H -0.201 1.201 16 H -0.169 1.169 17 O -0.217 6.217 18 C 0.050 3.950 19 C -0.165 4.165 20 C -0.162 4.162 21 C 0.081 3.919 22 F -0.098 7.098 23 N -0.206 5.206 24 C -0.069 4.069 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.084 0.916 33 H 0.162 0.838 34 H 0.191 0.809 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -7.879 -10.913 0.700 13.478 hybrid contribution 0.080 0.313 -1.644 1.676 sum -7.799 -10.600 -0.944 13.194 Atomic orbital electron populations 1.21818 0.90046 1.04423 1.03793 1.23324 0.97363 0.79412 1.02412 1.86539 1.23810 1.33765 1.83822 1.24237 0.80702 0.93068 0.71280 1.90618 1.61054 1.43914 1.46449 1.21996 0.94946 0.90230 1.07409 1.20380 0.90212 0.92541 0.83005 0.93485 1.21250 1.43458 0.99655 0.94091 0.93463 1.25585 0.93620 0.95304 1.01271 1.69988 1.41325 1.18618 1.25676 0.86435 0.80622 0.80657 0.79829 1.16993 1.20086 1.16859 1.85920 1.29167 1.68242 1.38420 1.20243 0.86860 0.92818 0.95098 1.21814 0.95212 1.00216 0.99284 1.21833 0.96588 0.99027 0.98765 1.18036 0.83465 0.99488 0.90889 1.91559 1.39854 1.81479 1.96930 1.66949 1.06956 1.16833 1.29894 1.22021 0.90316 0.97179 0.97353 0.88005 0.91142 0.91245 0.91584 0.91468 0.86136 0.85419 0.91561 0.83816 0.80883 0.79190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.29 71.98 0.74 -1.44 16 2 C 0.05 1.11 6.19 71.98 0.45 1.55 16 3 O -0.36 -10.71 10.22 -51.41 -0.53 -11.23 16 4 C 0.46 16.26 7.84 71.24 0.56 16.81 16 5 O -0.53 -21.20 15.18 26.95 0.41 -20.79 16 6 C -0.11 -3.94 5.26 29.85 0.16 -3.78 16 7 C 0.19 8.35 0.77 29.85 0.02 8.37 16 8 H 0.05 2.08 3.30 -2.39 -0.01 2.07 16 9 C -0.55 -27.66 8.77 25.60 0.22 -27.44 16 10 H 0.05 2.75 8.06 -2.91 -0.02 2.72 16 11 C 0.04 2.26 5.47 84.66 0.46 2.73 16 12 N -0.92 -51.13 13.96 21.45 0.30 -50.83 16 13 Si 0.90 36.98 26.00 68.60 1.78 38.77 16 14 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 15 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 16 H -0.24 -9.51 5.91 99.48 0.59 -8.92 16 17 O -0.31 -13.02 9.07 -79.71 -0.72 -13.74 16 18 C 0.10 4.00 6.57 22.58 0.15 4.15 16 19 C -0.14 -5.41 8.94 22.55 0.20 -5.21 16 20 C -0.14 -4.76 10.08 22.40 0.23 -4.53 16 21 C 0.23 8.28 8.41 84.74 0.71 8.99 16 22 F -0.12 -3.93 17.29 44.97 0.78 -3.15 16 23 N -0.49 -18.12 10.37 -196.58 -2.04 -20.16 16 24 C 0.09 3.23 11.13 84.76 0.94 4.17 16 25 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 29 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 30 H 0.12 4.14 6.35 -2.39 -0.02 4.12 16 31 H 0.13 4.27 8.14 -2.39 -0.02 4.25 16 32 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 33 H 0.14 5.80 5.92 -2.91 -0.02 5.79 16 34 H 0.17 4.61 8.06 -2.91 -0.02 4.58 16 35 H 0.19 5.74 8.06 -2.91 -0.02 5.72 16 Total: -1.00 -61.96 308.81 5.83 -56.12 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 1.00 Total: 20.63 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 4.84 Total: 4.38 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -1.74 Total: -70.99 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -0.84 Total: -45.76 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 1.78 Total: 38.77 kcal Total: -61.96 5.83 -56.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226698945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.508 kcal (2) G-P(sol) polarization free energy of solvation -61.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds