Wall clock time and date at job start Fri Apr 10 2020 15:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47245 * 2 1 4 4 C 1.34233 * 117.00012 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00014 * 0.02562 * 4 3 2 6 6 C 1.50691 * 119.99921 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47341 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.47195 * 55.00026 * 7 6 4 9 9 C 1.50699 * 109.47562 * 174.99770 * 7 6 4 10 10 H 1.07997 * 120.00581 * 240.00081 * 9 7 6 11 11 C 1.37877 * 119.99663 * 59.99914 * 9 7 6 12 12 N 1.31515 * 120.00518 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99913 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47090 * 59.99915 * 13 11 9 15 15 H 1.48504 * 109.47070 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46958 * 299.99901 * 13 11 9 17 17 O 1.42901 * 109.46823 * 294.99940 * 7 6 4 18 18 C 1.35685 * 116.99899 * 150.00016 * 17 7 6 19 19 C 1.38796 * 119.67044 * 180.02562 * 18 17 7 20 20 C 1.38662 * 119.07957 * 179.97438 * 19 18 17 21 21 F 1.35103 * 120.78309 * 179.97438 * 20 19 18 22 22 C 1.39110 * 118.43378 * 359.97438 * 20 19 18 23 23 C 1.37933 * 119.25732 * 0.02562 * 22 20 19 24 24 N 1.32006 * 120.86037 * 359.71830 * 23 22 20 25 25 H 1.09004 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47137 * 299.99982 * 1 2 3 27 27 H 1.09002 * 109.47079 * 59.99988 * 1 2 3 28 28 H 1.09003 * 109.47137 * 240.00018 * 2 1 3 29 29 H 1.09002 * 109.47079 * 120.00012 * 2 1 3 30 30 H 1.09003 * 109.47474 * 60.00179 * 6 4 3 31 31 H 1.09007 * 109.47360 * 300.00271 * 6 4 3 32 32 H 0.96998 * 120.00802 * 179.97438 * 12 11 9 33 33 H 1.08001 * 120.45828 * 359.96910 * 19 18 17 34 34 H 1.08002 * 120.37311 * 179.97438 * 22 20 19 35 35 H 1.08000 * 119.57618 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 6 5.4486 2.8573 0.0010 8 1 5.7806 2.2501 -0.8410 9 6 6.0244 4.2445 -0.1222 10 1 6.6591 4.4933 -0.9598 11 6 5.7408 5.1960 0.8344 12 7 4.9682 4.8930 1.8546 13 14 6.4539 6.9158 0.6813 14 1 5.9899 7.5329 -0.5873 15 1 6.0022 7.7430 1.8289 16 1 7.9369 6.8385 0.6808 17 8 5.8945 2.2632 1.2218 18 6 7.0515 1.5559 1.1761 19 6 7.5355 0.9549 2.3298 20 6 8.7188 0.2346 2.2690 21 9 9.2213 -0.3639 3.3710 22 6 9.3762 0.1427 1.0464 23 6 8.8352 0.7665 -0.0585 24 7 7.7040 1.4410 0.0309 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5845 3.4692 0.8912 31 1 3.5851 3.4698 -0.8888 32 1 4.7690 5.5623 2.5278 33 1 6.9979 1.0472 3.2620 34 1 10.3003 -0.4101 0.9635 35 1 9.3415 0.6989 -1.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226768825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:09 Heat of formation + Delta-G solvation = -154.848995 kcal Electronic energy + Delta-G solvation = -22343.942754 eV Core-core repulsion = 18642.548726 eV Total energy + Delta-G solvation = -3701.394028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.09520 -41.54338 -41.05590 -38.70589 -37.44588 -35.16584 -32.96627 -32.82969 -32.16805 -30.92172 -28.14115 -25.11057 -24.56715 -24.03782 -23.04360 -21.55504 -19.85226 -18.91674 -18.43703 -17.75234 -17.68167 -17.31327 -16.92518 -16.84326 -16.66071 -16.43030 -15.72610 -15.45770 -15.17364 -14.74980 -14.48512 -14.24020 -13.87219 -13.68541 -13.41864 -13.05684 -12.96461 -12.81404 -12.64974 -12.56253 -12.46917 -12.29798 -11.54354 -11.48452 -11.42746 -11.08873 -10.70878 -10.55273 -10.42606 -9.28626 -8.17452 -6.42031 0.12874 0.32198 1.30764 1.43286 1.44829 1.52582 1.83137 2.38437 2.41728 2.86399 3.10522 3.23527 3.56365 3.95294 3.99618 4.00051 4.11861 4.15108 4.21938 4.34277 4.52319 4.73253 4.77911 4.86332 4.92329 4.92822 4.96364 5.02130 5.14154 5.38833 5.52990 5.62951 5.73548 6.03702 6.53778 6.85030 6.92640 7.10930 7.37393 8.83609 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.007542 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.129831 B = 3711.519153 C = 5858.434738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.366 6.366 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.100 4.100 7 C 0.231 3.769 8 H 0.040 0.960 9 C -0.561 4.561 10 H 0.061 0.939 11 C 0.042 3.958 12 N -0.885 5.885 13 Si 0.956 3.044 14 H -0.261 1.261 15 H -0.280 1.280 16 H -0.281 1.281 17 O -0.299 6.299 18 C 0.362 3.638 19 C -0.273 4.273 20 C 0.171 3.829 21 F -0.127 7.127 22 C -0.256 4.256 23 C 0.165 3.835 24 N -0.564 5.564 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.268 0.732 33 H 0.137 0.863 34 H 0.182 0.818 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 -7.994 -2.669 8.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.309 3.691 5 O -0.430 6.430 6 C -0.138 4.138 7 C 0.177 3.823 8 H 0.058 0.942 9 C -0.598 4.598 10 H 0.079 0.921 11 C -0.162 4.162 12 N -0.521 5.521 13 Si 0.781 3.219 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.207 1.207 17 O -0.204 6.204 18 C 0.184 3.816 19 C -0.295 4.295 20 C 0.144 3.856 21 F -0.106 7.106 22 C -0.277 4.277 23 C 0.008 3.992 24 N -0.290 5.290 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.199 0.801 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.449 -7.778 -2.963 8.448 hybrid contribution 0.734 0.320 1.084 1.348 sum -0.715 -7.458 -1.878 7.724 Atomic orbital electron populations 1.21808 0.89858 1.04444 1.03726 1.23278 0.97498 0.79717 1.02010 1.86550 1.24235 1.33514 1.84025 1.24564 0.80357 0.93493 0.70666 1.90576 1.61067 1.44204 1.47128 1.21740 0.95961 0.89012 1.07074 1.19656 0.88890 0.91958 0.81844 0.94195 1.21492 1.32549 0.95496 1.10270 0.92124 1.25731 0.94137 1.02183 0.94151 1.69956 1.35304 1.35518 1.11317 0.85664 0.78498 0.79497 0.78285 1.18591 1.20544 1.20679 1.86381 1.33268 1.60851 1.39865 1.19844 0.86745 0.86346 0.88713 1.20985 1.00404 1.08124 0.99985 1.17626 0.91650 0.92391 0.83914 1.91502 1.86391 1.80905 1.51769 1.22171 1.05404 1.08925 0.91160 1.23052 0.88616 0.87797 0.99737 1.67524 1.11816 1.22656 1.26994 0.87806 0.91515 0.90982 0.91479 0.92324 0.86030 0.86335 0.92219 0.84478 0.80065 0.78224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 10.29 71.98 0.74 -2.04 16 2 C 0.05 1.40 6.19 71.98 0.45 1.84 16 3 O -0.37 -13.55 10.22 -51.44 -0.53 -14.07 16 4 C 0.46 20.26 7.84 71.23 0.56 20.82 16 5 O -0.54 -25.96 15.17 27.04 0.41 -25.55 16 6 C -0.10 -4.64 5.22 29.84 0.16 -4.49 16 7 C 0.23 11.85 1.59 29.85 0.05 11.90 16 8 H 0.04 2.11 6.79 -2.39 -0.02 2.09 16 9 C -0.56 -29.96 8.90 25.60 0.23 -29.73 16 10 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 11 C 0.04 2.21 5.24 84.65 0.44 2.66 16 12 N -0.88 -47.68 10.93 21.45 0.23 -47.45 16 13 Si 0.96 41.54 29.54 68.60 2.03 43.57 16 14 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 O -0.30 -15.96 8.38 -76.21 -0.64 -16.60 16 18 C 0.36 17.38 7.45 84.76 0.63 18.01 16 19 C -0.27 -11.50 10.04 22.50 0.23 -11.27 16 20 C 0.17 5.92 7.39 22.58 0.17 6.09 16 21 F -0.13 -4.04 17.30 44.97 0.78 -3.27 16 22 C -0.26 -7.37 10.10 22.41 0.23 -7.15 16 23 C 0.17 5.31 11.17 84.59 0.95 6.25 16 24 N -0.56 -24.68 8.64 -309.04 -2.67 -27.35 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 29 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 30 H 0.12 6.10 6.22 -2.39 -0.01 6.09 16 31 H 0.12 4.96 8.14 -2.38 -0.02 4.94 16 32 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.14 5.70 8.06 -2.91 -0.02 5.68 16 34 H 0.18 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.20 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -65.67 315.06 5.54 -60.13 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.11 Total: 17.69 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 4.81 Total: 12.89 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -2.44 Total: -74.80 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -0.75 Total: -56.22 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -65.67 5.54 -60.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226768825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.717 kcal (2) G-P(sol) polarization free energy of solvation -65.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds