Wall clock time and date at job start Fri Apr 10 2020 14:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21248 * 120.00215 * 2 1 4 4 C 1.47191 * 119.99944 * 179.97438 * 2 1 3 5 5 C 1.39943 * 120.10911 * 0.02562 * 4 2 1 6 6 C 1.37959 * 120.07593 * 180.02562 * 5 4 2 7 7 C 1.38183 * 120.31259 * 0.02562 * 6 5 4 8 8 C 1.39509 * 120.22116 * 359.97231 * 7 6 5 9 9 C 1.48310 * 120.04371 * 180.02562 * 8 7 6 10 10 C 1.39422 * 119.64889 * 4.97452 * 9 8 7 11 11 C 1.38223 * 119.14222 * 179.77195 * 10 9 8 12 12 C 1.39415 * 118.45949 * 0.51259 * 11 10 9 13 13 O 1.35715 * 120.39100 * 179.73461 * 12 11 10 14 14 C 1.34811 * 116.99758 * 5.19006 * 13 12 11 15 15 H 1.07994 * 119.99864 * 354.91906 * 14 13 12 16 16 C 1.38654 * 119.99424 * 174.92535 * 14 13 12 17 17 N 1.31567 * 119.99395 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00600 * 359.71925 * 16 14 13 19 19 H 1.48494 * 109.47540 * 270.28144 * 18 16 14 20 20 H 1.48502 * 109.46631 * 30.28156 * 18 16 14 21 21 H 1.48497 * 109.47261 * 150.27684 * 18 16 14 22 22 C 1.38969 * 119.22338 * 359.46667 * 12 11 10 23 23 N 1.31654 * 120.78548 * 0.29256 * 22 12 11 24 24 C 1.39100 * 119.91632 * 0.27931 * 8 7 6 25 25 H 1.08996 * 109.47396 * 240.00167 * 1 2 3 26 26 H 1.09002 * 109.47049 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46781 * 120.00227 * 1 2 3 28 28 H 1.07996 * 119.95968 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.84200 * 179.97438 * 6 5 4 30 30 H 1.07995 * 119.89105 * 179.97438 * 7 6 5 31 31 H 1.07991 * 120.42601 * 0.04467 * 10 9 8 32 32 H 1.08004 * 120.77219 * 180.28070 * 11 10 9 33 33 H 0.96996 * 119.99509 * 179.71852 * 17 16 14 34 34 H 1.08002 * 119.60467 * 180.27020 * 22 12 11 35 35 H 1.08001 * 120.15187 * 179.71091 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 1.5456 -2.4880 0.0006 6 6 2.2360 -3.6823 0.0016 7 6 3.6178 -3.6891 0.0032 8 6 4.3259 -2.4871 0.0032 9 6 5.8090 -2.4989 0.0044 10 6 6.4891 -3.7115 -0.0996 11 6 7.8713 -3.7100 -0.1022 12 6 8.5345 -2.4889 0.0107 13 8 9.8909 -2.4423 0.0178 14 6 10.5442 -3.6020 -0.1960 15 1 9.9910 -4.5257 -0.2808 16 6 11.9262 -3.6088 -0.3067 17 7 12.5638 -4.7406 -0.5159 18 14 12.8824 -2.0102 -0.1677 19 1 13.0200 -1.3969 -1.5130 20 1 12.1568 -1.0761 0.7303 21 1 14.2304 -2.2866 0.3906 22 6 7.7905 -1.3194 0.1104 23 7 6.4745 -1.3554 0.1048 24 6 3.6392 -1.2774 0.0074 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.4656 -2.4893 0.0006 29 1 1.6940 -4.6165 0.0021 30 1 4.1515 -4.6280 0.0045 31 1 5.9430 -4.6396 -0.1814 32 1 8.4248 -4.6336 -0.1861 33 1 13.5303 -4.7448 -0.5974 34 1 8.2980 -0.3697 0.1937 35 1 4.1836 -0.3446 0.0122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239634043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:50 Heat of formation + Delta-G solvation = -6.033955 kcal Electronic energy + Delta-G solvation = -20200.195253 eV Core-core repulsion = 16936.023555 eV Total energy + Delta-G solvation = -3264.171698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23683 -39.62792 -38.28436 -37.22066 -32.87197 -32.47324 -31.67746 -31.18850 -29.92103 -28.34359 -25.62162 -24.18594 -23.20175 -22.37580 -21.29380 -19.58639 -18.18126 -17.75297 -17.05351 -16.04379 -15.86838 -15.25757 -15.18872 -15.10804 -14.46129 -14.33832 -14.02290 -13.88677 -13.57735 -13.15227 -12.94828 -12.68332 -12.63652 -12.43951 -12.26664 -12.07055 -11.74566 -11.62694 -11.05079 -11.05031 -10.43776 -9.87564 -9.85374 -9.40233 -9.21586 -8.99866 -8.97560 -8.85986 -7.42582 -6.65736 -4.30172 0.57079 1.09263 1.85237 2.03682 2.48720 3.10370 3.14699 3.27943 3.77960 3.92597 4.05756 4.40941 4.49607 4.68026 4.74301 4.86270 4.89897 4.98916 5.08876 5.14905 5.25708 5.26479 5.43413 5.57114 5.64902 5.69413 5.85123 5.90713 5.99347 6.27065 6.29770 6.35461 6.53739 6.75422 6.85421 6.89446 7.14470 7.43377 7.50387 7.74485 8.53963 8.67229 9.24384 10.40349 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.035383 B = 0.003253 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.147585 B = 8604.093667 C = 9369.645164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.393 3.607 3 O -0.457 6.457 4 C -0.177 4.177 5 C -0.087 4.087 6 C -0.131 4.131 7 C -0.089 4.089 8 C -0.016 4.016 9 C 0.043 3.957 10 C -0.100 4.100 11 C -0.189 4.189 12 C 0.115 3.885 13 O -0.196 6.196 14 C -0.392 4.392 15 H 0.109 0.891 16 C 0.067 3.933 17 N -0.866 5.866 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.256 1.256 21 H -0.279 1.279 22 C 0.037 3.963 23 N -0.432 5.432 24 C -0.039 4.039 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.284 0.716 34 H 0.154 0.846 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.077 1.729 0.797 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.271 3.729 3 O -0.332 6.332 4 C -0.178 4.178 5 C -0.105 4.105 6 C -0.149 4.149 7 C -0.108 4.108 8 C -0.017 4.017 9 C -0.091 4.091 10 C -0.120 4.120 11 C -0.215 4.215 12 C 0.058 3.942 13 O -0.098 6.098 14 C -0.468 4.468 15 H 0.126 0.874 16 C -0.139 4.139 17 N -0.501 5.501 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.180 1.180 21 H -0.205 1.205 22 C -0.127 4.127 23 N -0.141 5.141 24 C -0.058 4.058 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.163 0.837 33 H 0.094 0.906 34 H 0.172 0.828 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.791 3.096 0.863 20.051 hybrid contribution 1.052 -0.696 -0.068 1.264 sum -18.739 2.400 0.795 18.909 Atomic orbital electron populations 1.22237 0.93954 1.04932 1.04408 1.22524 0.91530 0.87750 0.71050 1.90555 1.72183 1.34318 1.36149 1.20447 0.94485 0.94670 1.08215 1.21351 0.99666 0.91535 0.97993 1.20963 0.93954 0.97993 1.01993 1.21472 0.94173 0.97731 0.97438 1.18494 0.91020 0.92870 0.99307 1.19064 0.91603 0.89222 1.09204 1.21724 0.94128 0.97889 0.98269 1.21586 0.94078 0.99034 1.06772 1.20308 0.84573 0.94509 0.94797 1.83558 1.13549 1.35850 1.76816 1.20832 0.90834 0.84515 1.50583 0.87385 1.24535 0.95589 0.98760 0.94967 1.69639 1.10099 1.25816 1.44553 0.86141 0.78763 0.82223 0.79678 1.19521 1.18022 1.20454 1.21771 0.88219 0.96463 1.06234 1.67340 1.08293 1.28760 1.09668 1.21597 0.92372 0.99028 0.92837 0.88922 0.89877 0.88925 0.85443 0.85434 0.85272 0.85732 0.83737 0.90567 0.82838 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 8.93 36.01 0.32 -1.06 16 2 C 0.39 4.68 7.23 -30.67 -0.22 4.45 16 3 O -0.46 -7.23 17.07 5.58 0.10 -7.13 16 4 C -0.18 -2.21 5.87 -105.10 -0.62 -2.82 16 5 C -0.09 -0.83 9.47 -39.05 -0.37 -1.20 16 6 C -0.13 -1.28 10.01 -39.70 -0.40 -1.68 16 7 C -0.09 -1.09 9.41 -39.13 -0.37 -1.45 16 8 C -0.02 -0.25 5.87 -104.96 -0.62 -0.86 16 9 C 0.04 0.79 6.72 -82.92 -0.56 0.23 16 10 C -0.10 -1.75 9.44 -39.15 -0.37 -2.12 16 11 C -0.19 -3.83 9.25 -39.15 -0.36 -4.19 16 12 C 0.11 2.52 6.67 -38.87 -0.26 2.26 16 13 O -0.20 -4.86 8.59 0.21 0.00 -4.85 16 14 C -0.39 -10.38 9.95 30.89 0.31 -10.08 16 15 H 0.11 2.89 5.48 -52.49 -0.29 2.61 16 16 C 0.07 1.78 5.49 -17.51 -0.10 1.68 16 17 N -0.87 -23.64 13.96 55.48 0.77 -22.87 16 18 Si 0.91 20.48 28.62 -169.99 -4.86 15.61 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.04 0.74 11.14 -17.36 -0.19 0.55 16 23 N -0.43 -8.51 9.42 -9.61 -0.09 -8.60 16 24 C -0.04 -0.61 9.12 -38.74 -0.35 -0.96 16 25 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 27 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.13 0.77 7.03 -52.49 -0.37 0.40 16 29 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.35 6.18 -52.49 -0.32 1.03 16 31 H 0.12 1.73 6.20 -52.49 -0.33 1.41 16 32 H 0.15 2.96 5.75 -52.48 -0.30 2.66 16 33 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.15 2.80 8.06 -52.49 -0.42 2.37 16 35 H 0.14 2.47 7.12 -52.49 -0.37 2.10 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -30.23 310.04 -6.79 -37.02 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -3.22 Total: 3.40 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -4.15 Total: -17.25 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.68 Total: -31.47 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.10 Total: -11.99 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.86 Total: 15.61 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.23 -6.79 -37.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239634043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.986 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds