Wall clock time and date at job start Fri Apr 10 2020 14:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21248 * 120.00215 * 2 1 4 4 C 1.47191 * 119.99944 * 179.97438 * 2 1 3 5 5 C 1.39943 * 120.10911 * 0.02562 * 4 2 1 6 6 C 1.37959 * 120.07593 * 180.02562 * 5 4 2 7 7 C 1.38183 * 120.31259 * 0.02562 * 6 5 4 8 8 C 1.39509 * 120.22116 * 359.97231 * 7 6 5 9 9 C 1.48310 * 120.04371 * 180.02562 * 8 7 6 10 10 C 1.39422 * 119.64889 * 4.97452 * 9 8 7 11 11 C 1.38223 * 119.14222 * 179.77195 * 10 9 8 12 12 C 1.39415 * 118.45949 * 0.51259 * 11 10 9 13 13 O 1.35715 * 120.39100 * 179.73461 * 12 11 10 14 14 C 1.34811 * 116.99758 * 5.19006 * 13 12 11 15 15 H 1.07994 * 119.99864 * 354.91906 * 14 13 12 16 16 C 1.38654 * 119.99424 * 174.92535 * 14 13 12 17 17 N 1.31567 * 119.99395 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00600 * 359.71925 * 16 14 13 19 19 H 1.48494 * 109.47540 * 270.28144 * 18 16 14 20 20 H 1.48502 * 109.46631 * 30.28156 * 18 16 14 21 21 H 1.48497 * 109.47261 * 150.27684 * 18 16 14 22 22 C 1.38969 * 119.22338 * 359.46667 * 12 11 10 23 23 N 1.31654 * 120.78548 * 0.29256 * 22 12 11 24 24 C 1.39100 * 119.91632 * 0.27931 * 8 7 6 25 25 H 1.08996 * 109.47396 * 240.00167 * 1 2 3 26 26 H 1.09002 * 109.47049 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46781 * 120.00227 * 1 2 3 28 28 H 1.07996 * 119.95968 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.84200 * 179.97438 * 6 5 4 30 30 H 1.07995 * 119.89105 * 179.97438 * 7 6 5 31 31 H 1.07991 * 120.42601 * 0.04467 * 10 9 8 32 32 H 1.08004 * 120.77219 * 180.28070 * 11 10 9 33 33 H 0.96996 * 119.99509 * 179.71852 * 17 16 14 34 34 H 1.08002 * 119.60467 * 180.27020 * 22 12 11 35 35 H 1.08001 * 120.15187 * 179.71091 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 1.5456 -2.4880 0.0006 6 6 2.2360 -3.6823 0.0016 7 6 3.6178 -3.6891 0.0032 8 6 4.3259 -2.4871 0.0032 9 6 5.8090 -2.4989 0.0044 10 6 6.4891 -3.7115 -0.0996 11 6 7.8713 -3.7100 -0.1022 12 6 8.5345 -2.4889 0.0107 13 8 9.8909 -2.4423 0.0178 14 6 10.5442 -3.6020 -0.1960 15 1 9.9910 -4.5257 -0.2808 16 6 11.9262 -3.6088 -0.3067 17 7 12.5638 -4.7406 -0.5159 18 14 12.8824 -2.0102 -0.1677 19 1 13.0200 -1.3969 -1.5130 20 1 12.1568 -1.0761 0.7303 21 1 14.2304 -2.2866 0.3906 22 6 7.7905 -1.3194 0.1104 23 7 6.4745 -1.3554 0.1048 24 6 3.6392 -1.2774 0.0074 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.4656 -2.4893 0.0006 29 1 1.6940 -4.6165 0.0021 30 1 4.1515 -4.6280 0.0045 31 1 5.9430 -4.6396 -0.1814 32 1 8.4248 -4.6336 -0.1861 33 1 13.5303 -4.7448 -0.5974 34 1 8.2980 -0.3697 0.1937 35 1 4.1836 -0.3446 0.0122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239634043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:50 Heat of formation + Delta-G solvation = -24.355566 kcal Electronic energy + Delta-G solvation = -20200.989738 eV Core-core repulsion = 16936.023555 eV Total energy + Delta-G solvation = -3264.966183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.62201 -40.83558 -39.57655 -38.62454 -34.63200 -33.77692 -33.17180 -32.22302 -30.89257 -29.59166 -27.38129 -25.33043 -24.60037 -23.70299 -22.52560 -20.66161 -19.95335 -19.34181 -18.24826 -17.45927 -16.95586 -16.60061 -16.31303 -16.12523 -15.99082 -15.95857 -15.25157 -15.05354 -14.71191 -14.57970 -14.55667 -14.37107 -13.99681 -13.38844 -13.38286 -12.96470 -12.96104 -12.79188 -12.65072 -12.19195 -12.04907 -11.75571 -11.09274 -10.81600 -10.73349 -10.51422 -10.32838 -9.95218 -8.93191 -8.59064 -6.31008 -0.42675 -0.09540 0.27200 0.80583 1.30908 1.33791 1.48285 1.50547 2.22851 2.61390 2.77079 2.89341 3.09423 3.15698 3.32272 3.70640 3.90095 4.00658 4.08404 4.10744 4.22975 4.29964 4.41613 4.47258 4.65777 4.73017 4.75457 4.91144 4.94084 5.11688 5.17082 5.22105 5.34687 5.41848 5.48318 5.59584 5.66018 5.90776 5.95545 6.57087 6.73495 6.96638 7.40370 8.51227 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.035383 B = 0.003253 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.147585 B = 8604.093667 C = 9369.645164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.390 3.610 3 O -0.513 6.513 4 C -0.193 4.193 5 C -0.056 4.056 6 C -0.123 4.123 7 C -0.080 4.080 8 C -0.056 4.056 9 C 0.064 3.936 10 C -0.098 4.098 11 C -0.188 4.188 12 C 0.085 3.915 13 O -0.224 6.224 14 C -0.405 4.405 15 H 0.090 0.910 16 C 0.019 3.981 17 N -0.911 5.911 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.261 1.261 21 H -0.266 1.266 22 C 0.035 3.965 23 N -0.452 5.452 24 C -0.062 4.062 25 H 0.122 0.878 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.149 0.851 31 H 0.169 0.831 32 H 0.138 0.862 33 H 0.288 0.712 34 H 0.166 0.834 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.974 0.698 0.895 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.272 3.728 3 O -0.392 6.392 4 C -0.194 4.194 5 C -0.074 4.074 6 C -0.140 4.140 7 C -0.099 4.099 8 C -0.057 4.057 9 C -0.071 4.071 10 C -0.117 4.117 11 C -0.215 4.215 12 C 0.032 3.968 13 O -0.129 6.129 14 C -0.481 4.481 15 H 0.107 0.893 16 C -0.182 4.182 17 N -0.550 5.550 18 Si 0.788 3.212 19 H -0.190 1.190 20 H -0.186 1.186 21 H -0.190 1.190 22 C -0.126 4.126 23 N -0.161 5.161 24 C -0.081 4.081 25 H 0.141 0.859 26 H 0.100 0.900 27 H 0.141 0.859 28 H 0.196 0.804 29 H 0.191 0.809 30 H 0.167 0.833 31 H 0.186 0.814 32 H 0.156 0.844 33 H 0.098 0.902 34 H 0.183 0.817 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.731 2.077 0.965 24.837 hybrid contribution 1.925 -0.389 -0.089 1.966 sum -22.806 1.688 0.876 22.885 Atomic orbital electron populations 1.22282 0.89341 1.05934 1.07044 1.23340 0.93933 0.86631 0.68915 1.90548 1.73708 1.35988 1.38981 1.20713 0.93321 0.96672 1.08695 1.21939 1.02061 0.89833 0.93526 1.21514 0.92867 0.99949 0.99685 1.21802 0.95668 0.96877 0.95581 1.18497 0.89240 0.94509 1.03408 1.19822 0.93616 0.88847 1.04860 1.22090 0.92918 0.99540 0.97185 1.21750 0.95484 0.98229 1.05998 1.20679 0.84178 0.95860 0.96069 1.83526 1.14579 1.34830 1.79951 1.20767 0.91283 0.84678 1.51393 0.89258 1.25241 0.96357 1.01613 0.94960 1.69706 1.10534 1.27412 1.47338 0.85283 0.77816 0.78523 0.79614 1.19044 1.18562 1.19031 1.22004 0.88516 0.96594 1.05472 1.67486 1.07907 1.29965 1.10766 1.21472 0.94192 0.97793 0.94691 0.85942 0.90043 0.85944 0.80438 0.80895 0.83298 0.81392 0.84416 0.90213 0.81710 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 8.93 71.24 0.64 -1.13 16 2 C 0.39 8.48 7.23 28.04 0.20 8.68 16 3 O -0.51 -16.54 17.07 -2.93 -0.05 -16.59 16 4 C -0.19 -4.27 5.87 -20.18 -0.12 -4.39 16 5 C -0.06 -0.72 9.47 22.62 0.21 -0.50 16 6 C -0.12 -1.58 10.01 22.19 0.22 -1.36 16 7 C -0.08 -1.60 9.41 22.56 0.21 -1.38 16 8 C -0.06 -1.63 5.87 -20.08 -0.12 -1.74 16 9 C 0.06 2.30 6.72 41.98 0.28 2.59 16 10 C -0.10 -3.31 9.44 22.55 0.21 -3.10 16 11 C -0.19 -7.82 9.25 22.55 0.21 -7.61 16 12 C 0.09 3.92 6.67 22.73 0.15 4.07 16 13 O -0.22 -11.69 8.59 -22.17 -0.19 -11.88 16 14 C -0.41 -22.67 9.95 67.92 0.68 -21.99 16 15 H 0.09 5.12 5.48 -2.91 -0.02 5.11 16 16 C 0.02 1.04 5.49 84.83 0.47 1.51 16 17 N -0.91 -52.02 13.96 21.61 0.30 -51.72 16 18 Si 0.97 43.76 28.62 68.60 1.96 45.72 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 C 0.04 1.48 11.14 84.89 0.95 2.43 16 23 N -0.45 -18.30 9.42 -184.30 -1.74 -20.04 16 24 C -0.06 -1.89 9.12 22.81 0.21 -1.68 16 25 H 0.12 0.47 8.08 -2.39 -0.02 0.45 16 26 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 27 H 0.12 0.47 8.08 -2.39 -0.02 0.45 16 28 H 0.18 0.58 7.03 -2.91 -0.02 0.56 16 29 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 30 H 0.15 2.31 6.18 -2.91 -0.02 2.30 16 31 H 0.17 4.10 6.20 -2.92 -0.02 4.09 16 32 H 0.14 5.91 5.75 -2.91 -0.02 5.89 16 33 H 0.29 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.17 6.33 8.06 -2.91 -0.02 6.30 16 35 H 0.11 3.97 7.12 -2.91 -0.02 3.95 16 Total: -1.00 -73.59 310.04 5.83 -67.77 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 1.14 Total: 12.36 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 4.40 Total: -25.62 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -1.43 Total: -71.76 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.24 Total: -28.47 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.96 Total: 45.72 kcal Total: -73.59 5.83 -67.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239634043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.409 kcal (2) G-P(sol) polarization free energy of solvation -73.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds