Wall clock time and date at job start Fri Apr 10 2020 14:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21244 * 120.00361 * 2 1 4 4 C 1.47285 * 119.99481 * 179.97438 * 2 1 3 5 5 C 1.39765 * 119.60196 * 180.02562 * 4 2 1 6 6 C 1.38171 * 119.17597 * 179.78932 * 5 4 2 7 7 C 1.39896 * 118.39686 * 0.43566 * 6 5 4 8 8 C 1.48052 * 120.43185 * 179.80114 * 7 6 5 9 9 C 1.39443 * 120.17135 * 309.69960 * 8 7 6 10 10 C 1.37939 * 119.93334 * 180.02562 * 9 8 7 11 11 C 1.38507 * 120.29080 * 359.97438 * 10 9 8 12 12 C 1.38086 * 120.35531 * 0.02562 * 11 10 9 13 13 C 1.38780 * 120.05692 * 0.02562 * 12 11 10 14 14 O 1.35612 * 120.14360 * 180.02562 * 13 12 11 15 15 C 1.34798 * 116.99969 * 354.40071 * 14 13 12 16 16 H 1.07998 * 119.99897 * 5.06592 * 15 14 13 17 17 C 1.38686 * 119.99855 * 185.06231 * 15 14 13 18 18 N 1.31530 * 119.99898 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99950 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47372 * 60.00117 * 19 17 15 21 21 H 1.48495 * 109.47195 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47398 * 300.00322 * 19 17 15 23 23 C 1.39928 * 119.13823 * 359.52500 * 7 6 5 24 24 N 1.31199 * 120.74867 * 0.27478 * 23 7 6 25 25 H 1.09004 * 109.47769 * 240.00652 * 1 2 3 26 26 H 1.09003 * 109.47266 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47393 * 120.00374 * 1 2 3 28 28 H 1.07996 * 120.41408 * 0.02562 * 5 4 2 29 29 H 1.07999 * 120.80453 * 180.21584 * 6 5 4 30 30 H 1.07998 * 120.03028 * 0.04379 * 9 8 7 31 31 H 1.07998 * 119.85527 * 180.27492 * 10 9 8 32 32 H 1.08000 * 119.81894 * 179.97438 * 11 10 9 33 33 H 1.07994 * 119.96797 * 180.02562 * 12 11 10 34 34 H 0.97006 * 119.99788 * 180.02562 * 18 17 15 35 35 H 1.08007 * 119.62308 * 180.24865 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2433 -1.2756 0.0006 5 6 3.6409 -1.2660 0.0011 6 6 4.3227 -2.4678 0.0061 7 6 3.5807 -3.6537 0.0010 8 6 4.2651 -4.9665 0.0016 9 6 5.2757 -5.2304 -0.9222 10 6 5.9098 -6.4555 -0.9177 11 6 5.5476 -7.4261 0.0016 12 6 4.5485 -7.1776 0.9218 13 6 3.9002 -5.9505 0.9296 14 8 2.9191 -5.7044 1.8329 15 6 2.5402 -6.7311 2.6199 16 1 3.0684 -7.6719 2.5717 17 6 1.4723 -6.5792 3.4916 18 7 0.8289 -5.4335 3.5500 19 14 0.9478 -8.0017 4.5828 20 1 2.0774 -8.3924 5.4641 21 1 -0.2095 -7.5863 5.4154 22 1 0.5580 -9.1577 3.7360 23 6 2.1832 -3.5831 0.0013 24 7 1.5702 -2.4231 0.0009 25 1 -0.3635 -0.5137 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 4.1812 -0.3309 0.0015 29 1 5.4025 -2.4910 0.0101 30 1 5.5619 -4.4763 -1.6404 31 1 6.6953 -6.6569 -1.6309 32 1 6.0488 -8.3828 -0.0019 33 1 4.2714 -7.9387 1.6361 34 1 0.0821 -5.3272 4.1600 35 1 1.6026 -4.4938 0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242400898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:54 Heat of formation + Delta-G solvation = -22.079371 kcal Electronic energy + Delta-G solvation = -21017.924407 eV Core-core repulsion = 17753.056927 eV Total energy + Delta-G solvation = -3264.867480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.64082 -40.71120 -39.64450 -38.09112 -34.53941 -34.23878 -32.95207 -31.57276 -30.70111 -29.63703 -27.34982 -25.65132 -24.57708 -23.14565 -22.47427 -21.25763 -19.81956 -18.94786 -18.17533 -17.56744 -17.05863 -16.37576 -16.29695 -16.13234 -15.62503 -15.59608 -15.36572 -15.25164 -14.93874 -14.56084 -14.23709 -14.15665 -13.54526 -13.47809 -13.09961 -13.05399 -12.99428 -12.53598 -12.40932 -12.30079 -12.16130 -11.31828 -11.23829 -10.97712 -10.78797 -10.52650 -10.29079 -9.48326 -8.89027 -8.44744 -6.11742 -0.67853 0.26046 0.50383 0.74564 1.26131 1.36183 1.45643 1.50753 2.16919 2.71171 2.82050 2.88807 3.17926 3.41820 3.45602 3.71936 3.93884 3.99449 4.10941 4.17846 4.27382 4.34487 4.55938 4.59876 4.64183 4.68231 4.74758 4.91916 5.06282 5.09860 5.14571 5.17737 5.25024 5.53023 5.64211 5.71752 5.75886 6.01237 6.19519 6.22892 6.86169 6.99273 7.76631 8.75289 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.006160 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.312532 B = 4544.592242 C = 6494.250954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.420 3.580 3 O -0.481 6.481 4 C 0.001 3.999 5 C -0.113 4.113 6 C -0.082 4.082 7 C -0.037 4.037 8 C -0.154 4.154 9 C -0.051 4.051 10 C -0.192 4.192 11 C -0.061 4.061 12 C -0.248 4.248 13 C 0.131 3.869 14 O -0.210 6.210 15 C -0.415 4.415 16 H 0.102 0.898 17 C -0.014 4.014 18 N -0.906 5.906 19 Si 1.010 2.990 20 H -0.260 1.260 21 H -0.276 1.276 22 H -0.258 1.258 23 C 0.112 3.888 24 N -0.450 5.450 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.162 0.838 29 H 0.170 0.830 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.121 0.879 34 H 0.271 0.729 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 1.823 -8.301 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.299 3.701 3 O -0.356 6.356 4 C -0.134 4.134 5 C -0.132 4.132 6 C -0.107 4.107 7 C -0.039 4.039 8 C -0.156 4.156 9 C -0.068 4.068 10 C -0.210 4.210 11 C -0.079 4.079 12 C -0.267 4.267 13 C 0.079 3.921 14 O -0.115 6.115 15 C -0.491 4.491 16 H 0.119 0.881 17 C -0.213 4.213 18 N -0.543 5.543 19 Si 0.831 3.169 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.182 1.182 23 C -0.049 4.049 24 N -0.161 5.161 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.180 0.820 29 H 0.187 0.813 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.029 2.770 -8.130 9.953 hybrid contribution 0.263 -0.971 0.949 1.383 sum 5.292 1.799 -7.181 9.100 Atomic orbital electron populations 1.22072 0.90477 1.05298 1.05799 1.22609 0.93304 0.85273 0.68877 1.90492 1.73175 1.33724 1.38224 1.22015 0.92806 0.94173 1.04425 1.22365 0.94122 1.00106 0.96646 1.21927 1.01883 0.90002 0.96932 1.20054 0.94011 0.94110 0.95770 1.18023 1.03829 0.92652 1.01100 1.21174 0.92134 0.97952 0.95584 1.21119 1.03830 0.93681 1.02375 1.21307 0.94021 0.99893 0.92669 1.21277 1.02644 0.97668 1.05087 1.19895 0.89262 0.93767 0.89169 1.83928 1.46976 1.37915 1.42655 1.21736 1.15858 0.93026 1.18497 0.88114 1.26421 0.95081 1.00865 0.98944 1.70174 1.20970 1.25913 1.37252 0.84754 0.78259 0.76453 0.77480 1.18435 1.20070 1.18215 1.22713 0.92135 0.94844 0.95194 1.67486 1.41037 0.97964 1.09609 0.88719 0.88328 0.87479 0.81997 0.81285 0.83270 0.82817 0.83643 0.86108 0.92038 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.45 9.79 71.23 0.70 -3.76 16 2 C 0.42 13.15 7.23 28.07 0.20 13.35 16 3 O -0.48 -16.20 17.04 -2.92 -0.05 -16.25 16 4 C 0.00 0.03 6.73 41.71 0.28 0.31 16 5 C -0.11 -3.53 9.62 22.62 0.22 -3.32 16 6 C -0.08 -2.59 9.67 22.66 0.22 -2.37 16 7 C -0.04 -1.43 5.29 -19.86 -0.11 -1.54 16 8 C -0.15 -5.93 5.51 -19.93 -0.11 -6.04 16 9 C -0.05 -1.49 9.54 22.49 0.21 -1.27 16 10 C -0.19 -5.08 10.03 22.26 0.22 -4.86 16 11 C -0.06 -1.84 10.03 22.30 0.22 -1.61 16 12 C -0.25 -9.83 9.16 22.36 0.20 -9.63 16 13 C 0.13 5.97 6.57 22.85 0.15 6.12 16 14 O -0.21 -11.58 8.13 -20.90 -0.17 -11.75 16 15 C -0.42 -22.74 9.49 67.93 0.64 -22.10 16 16 H 0.10 5.06 5.21 -2.91 -0.02 5.04 16 17 C -0.01 -0.75 5.49 84.85 0.47 -0.28 16 18 N -0.91 -53.46 13.67 21.62 0.30 -53.17 16 19 Si 1.01 41.45 29.55 68.60 2.03 43.47 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 C 0.11 4.80 9.97 85.20 0.85 5.65 16 24 N -0.45 -17.97 9.76 -184.30 -1.80 -19.77 16 25 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 26 H 0.10 2.01 8.12 -2.39 -0.02 1.99 16 27 H 0.11 2.41 8.14 -2.39 -0.02 2.40 16 28 H 0.16 4.28 7.63 -2.91 -0.02 4.25 16 29 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.15 3.35 8.05 -2.91 -0.02 3.32 16 31 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 33 H 0.12 4.91 5.64 -2.91 -0.02 4.90 16 34 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 35 H 0.14 6.48 7.70 -2.91 -0.02 6.46 16 Total: -1.00 -68.44 314.67 5.80 -62.64 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 1.12 Total: 26.17 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.38 Total: -31.34 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -1.50 Total: -72.94 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.22 Total: -28.00 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -68.44 5.80 -62.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242400898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.558 kcal (2) G-P(sol) polarization free energy of solvation -68.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds