Wall clock time and date at job start Fri Apr 10 2020 15:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20825 * 120.00381 * 2 1 4 4 O 1.34280 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.35829 * 117.00432 * 182.57057 * 4 2 1 6 6 C 1.38961 * 119.91154 * 92.46543 * 5 4 2 7 7 C 1.37756 * 120.08964 * 179.97438 * 6 5 4 8 8 C 1.39704 * 119.91121 * 0.02562 * 7 6 5 9 9 C 1.47853 * 120.09072 * 180.02562 * 8 7 6 10 10 C 1.39953 * 119.45837 * 180.02562 * 9 8 7 11 11 C 1.36563 * 119.46740 * 180.02562 * 10 9 8 12 12 C 1.41325 * 118.42202 * 0.25101 * 11 10 9 13 13 C 1.41020 * 120.55213 * 179.72164 * 12 11 10 14 14 H 1.08004 * 120.00276 * 206.24400 * 13 12 11 15 15 C 1.40007 * 120.00208 * 26.24797 * 13 12 11 16 16 N 1.30809 * 119.99455 * 14.64834 * 15 13 12 17 17 Si 1.86798 * 120.00318 * 194.64649 * 15 13 12 18 18 H 1.48503 * 109.46709 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46759 * 119.99821 * 17 15 13 20 20 H 1.48496 * 109.47324 * 239.99977 * 17 15 13 21 21 C 1.40961 * 118.89753 * 359.50824 * 12 11 10 22 22 N 1.31262 * 120.40039 * 0.49917 * 21 12 11 23 23 C 1.39698 * 119.82240 * 0.27693 * 8 7 6 24 24 C 1.37767 * 119.90865 * 359.44402 * 23 8 7 25 25 H 1.09007 * 109.47298 * 269.99950 * 1 2 3 26 26 H 1.08996 * 109.47310 * 29.99737 * 1 2 3 27 27 H 1.09004 * 109.47374 * 150.00168 * 1 2 3 28 28 H 1.07999 * 119.95313 * 359.96474 * 6 5 4 29 29 H 1.08002 * 120.04753 * 180.02562 * 7 6 5 30 30 H 1.08004 * 120.26835 * 359.97438 * 10 9 8 31 31 H 1.08002 * 120.78914 * 179.97438 * 11 10 9 32 32 H 0.96995 * 119.99629 * 179.97438 * 16 15 13 33 33 H 1.07995 * 119.79908 * 180.25237 * 21 12 11 34 34 H 1.08005 * 120.04857 * 179.69783 * 23 8 7 35 35 H 1.08005 * 119.95374 * 180.25294 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 8 2.1783 -1.1629 0.0005 5 6 3.5337 -1.0925 0.0548 6 6 4.1812 -1.1348 1.2836 7 6 5.5556 -1.0642 1.3429 8 6 6.2987 -0.9494 0.1654 9 6 7.7741 -0.8739 0.2243 10 6 8.5054 -0.7586 -0.9634 11 6 9.8682 -0.6894 -0.9092 12 6 10.4946 -0.7428 0.3565 13 6 11.8994 -0.6809 0.4643 14 1 12.3961 -1.1280 1.3128 15 6 12.6501 -0.0400 -0.5285 16 7 12.0575 0.7408 -1.3947 17 14 14.4979 -0.2998 -0.6162 18 1 14.9201 -1.2217 0.4687 19 1 14.8529 -0.8893 -1.9322 20 1 15.1894 1.0044 -0.4553 21 6 9.6918 -0.8543 1.5098 22 7 8.3848 -0.9173 1.4057 23 6 5.6437 -0.9009 -1.0675 24 6 4.2691 -0.9779 -1.1186 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 3.6060 -1.2229 2.1934 29 1 6.0582 -1.0975 2.2983 30 1 7.9961 -0.7255 -1.9152 31 1 10.4536 -0.6006 -1.8124 32 1 12.5777 1.1852 -2.0823 33 1 10.1550 -0.8922 2.4846 34 1 6.2143 -0.8073 -1.9798 35 1 3.7622 -0.9445 -2.0718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243360596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:36 Heat of formation + Delta-G solvation = -33.376285 kcal Electronic energy + Delta-G solvation = -20289.148962 eV Core-core repulsion = 17023.791611 eV Total energy + Delta-G solvation = -3265.357351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06352 -38.95245 -37.84823 -36.50147 -34.30960 -31.55493 -31.12382 -30.48385 -30.29297 -28.61703 -25.56601 -23.29195 -22.89985 -21.49483 -21.08183 -20.23683 -18.09157 -17.57035 -16.89538 -16.44174 -16.32238 -15.52820 -14.88268 -14.49670 -14.10495 -13.89023 -13.67537 -13.20053 -13.11121 -12.96694 -12.78739 -12.69183 -12.26287 -11.83103 -11.76181 -11.61024 -11.50833 -11.33121 -10.99375 -10.74247 -10.58789 -10.35522 -9.96394 -9.62637 -8.70206 -8.63136 -8.43263 -8.17367 -7.34867 -7.04550 -4.64427 1.21050 1.78752 2.10795 2.47531 2.86380 2.90098 2.91367 2.96535 3.16972 3.68681 4.11606 4.55208 4.66923 4.98309 5.01814 5.17362 5.20342 5.37197 5.42475 5.54906 5.76771 5.85871 5.99348 6.05882 6.34729 6.41360 6.58814 6.60953 6.67805 6.71300 6.78400 6.88436 7.07675 7.17987 7.25139 7.58838 7.68657 7.79530 7.91859 8.23537 8.42919 8.52114 9.45370 9.81719 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.049626 B = 0.003012 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.079696 B = 9293.152440 C = 9557.600353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.446 3.554 3 O -0.496 6.496 4 O -0.293 6.293 5 C 0.038 3.962 6 C -0.113 4.113 7 C -0.103 4.103 8 C 0.032 3.968 9 C -0.014 4.014 10 C -0.118 4.118 11 C -0.142 4.142 12 C 0.070 3.930 13 C -0.430 4.430 14 H 0.089 0.911 15 C 0.070 3.930 16 N -0.776 5.776 17 Si 0.918 3.082 18 H -0.257 1.257 19 H -0.269 1.269 20 H -0.271 1.271 21 C -0.013 4.013 22 N -0.446 5.446 23 C -0.125 4.125 24 C -0.109 4.109 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.287 0.713 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.080 -2.727 -0.676 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.290 3.710 3 O -0.381 6.381 4 O -0.209 6.209 5 C -0.003 4.003 6 C -0.132 4.132 7 C -0.122 4.122 8 C 0.031 3.969 9 C -0.147 4.147 10 C -0.139 4.139 11 C -0.167 4.167 12 C 0.065 3.935 13 C -0.458 4.458 14 H 0.107 0.893 15 C -0.151 4.151 16 N -0.399 5.399 17 Si 0.741 3.259 18 H -0.180 1.180 19 H -0.194 1.194 20 H -0.196 1.196 21 C -0.179 4.179 22 N -0.153 5.153 23 C -0.144 4.144 24 C -0.128 4.128 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.112 0.888 28 H 0.139 0.861 29 H 0.155 0.845 30 H 0.121 0.879 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.340 -2.306 -0.167 13.539 hybrid contribution 1.427 0.195 -0.973 1.738 sum -11.913 -2.111 -1.140 12.152 Atomic orbital electron populations 1.21595 0.86892 1.05777 1.05759 1.24312 0.92021 0.82012 0.72631 1.90734 1.70690 1.32758 1.43966 1.84602 1.18598 1.34210 1.83453 1.18411 0.79509 1.08528 0.93871 1.21034 0.95110 1.01072 0.95950 1.21132 0.91886 0.99925 0.99257 1.18814 0.92071 0.93601 0.92364 1.18720 0.90644 1.15913 0.89407 1.21322 0.95163 1.00334 0.97056 1.21330 0.92909 1.03934 0.98543 1.18654 0.94382 0.88402 0.92046 1.19742 0.91360 1.28818 1.05911 0.89332 1.26119 1.02324 0.92720 0.93958 1.69782 1.39138 1.18508 1.12495 0.86082 0.80636 0.79465 0.79672 1.17992 1.19384 1.19580 1.22501 0.88124 1.09975 0.97335 1.66917 1.12340 1.09038 1.27046 1.21053 0.93047 1.02389 0.97879 1.20949 0.94275 1.00643 0.96910 0.87765 0.87993 0.88760 0.86113 0.84494 0.87934 0.85469 0.90144 0.85132 0.85299 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 10.41 36.00 0.37 -0.61 16 2 C 0.45 5.84 8.01 36.00 0.29 6.13 16 3 O -0.50 -8.58 16.84 -18.75 -0.32 -8.90 16 4 O -0.29 -4.24 10.01 -23.36 -0.23 -4.47 16 5 C 0.04 0.64 4.92 -39.05 -0.19 0.44 16 6 C -0.11 -1.93 9.97 -39.49 -0.39 -2.32 16 7 C -0.10 -1.96 9.57 -39.21 -0.38 -2.34 16 8 C 0.03 0.67 5.88 -104.87 -0.62 0.05 16 9 C -0.01 -0.32 6.74 -82.76 -0.56 -0.88 16 10 C -0.12 -2.73 9.38 -39.54 -0.37 -3.10 16 11 C -0.14 -3.52 8.72 -39.01 -0.34 -3.86 16 12 C 0.07 1.77 5.57 -106.64 -0.59 1.17 16 13 C -0.43 -10.44 9.07 -37.87 -0.34 -10.78 16 14 H 0.09 2.02 7.89 -52.48 -0.41 1.61 16 15 C 0.07 1.60 5.21 -17.32 -0.09 1.51 16 16 N -0.78 -18.51 10.91 55.55 0.61 -17.91 16 17 Si 0.92 17.01 29.58 -169.99 -5.03 11.98 16 18 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 19 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 21 C -0.01 -0.32 10.97 -16.76 -0.18 -0.51 16 22 N -0.45 -10.80 9.38 -9.11 -0.09 -10.89 16 23 C -0.12 -2.26 9.41 -39.21 -0.37 -2.63 16 24 C -0.11 -1.83 9.97 -39.49 -0.39 -2.22 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.14 2.59 7.52 -52.49 -0.39 2.20 16 30 H 0.10 2.06 6.14 -52.48 -0.32 1.74 16 31 H 0.13 3.17 6.27 -52.49 -0.33 2.84 16 32 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 33 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 34 H 0.13 2.14 6.14 -52.48 -0.32 1.82 16 35 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -29.39 312.70 -7.96 -37.35 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.45 Total: 8.06 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -4.16 Total: -19.94 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: 0.52 Total: -28.79 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.55 Total: -13.37 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.39 -7.96 -37.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243360596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.973 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds